Wall clock time and date at job start Tue Mar 31 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47136 * 57.52157 * 3 2 1 5 5 N 1.46498 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00131 * 269.99935 * 5 4 3 7 7 C 1.50695 * 109.47137 * 270.00075 * 6 5 4 8 8 H 1.07992 * 120.00343 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99693 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99660 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00152 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.46874 * 89.99869 * 11 9 7 13 13 H 1.48504 * 109.47082 * 209.99972 * 11 9 7 14 14 H 1.48497 * 109.47066 * 329.99878 * 11 9 7 15 15 C 1.34774 * 119.99918 * 89.99983 * 5 4 3 16 16 O 1.21283 * 119.99903 * 180.02562 * 15 5 4 17 17 C 1.50696 * 120.00235 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47144 * 179.97438 * 17 15 5 19 19 C 1.53006 * 109.46811 * 179.97438 * 18 17 15 20 20 O 1.42901 * 112.84973 * 53.80409 * 19 18 17 21 21 C 1.53772 * 113.61475 * 282.49623 * 19 18 17 22 22 C 1.53781 * 87.08354 * 220.02318 * 21 19 18 23 23 C 1.53781 * 113.61135 * 184.99718 * 19 18 17 24 24 H 1.09000 * 109.47363 * 297.52184 * 3 2 1 25 25 H 1.09002 * 109.47290 * 177.51969 * 3 2 1 26 26 H 1.09000 * 109.46972 * 59.99787 * 4 3 2 27 27 H 1.08998 * 109.47580 * 300.00206 * 4 3 2 28 28 H 1.09004 * 109.46876 * 30.00321 * 6 5 4 29 29 H 1.08998 * 109.47271 * 149.99832 * 6 5 4 30 30 H 0.97006 * 119.99354 * 179.97438 * 10 9 7 31 31 H 1.09009 * 109.47208 * 59.99839 * 17 15 5 32 32 H 1.09001 * 109.47093 * 300.00146 * 17 15 5 33 33 H 1.08992 * 109.47188 * 60.00163 * 18 17 15 34 34 H 1.08997 * 109.46828 * 299.99882 * 18 17 15 35 35 H 0.96698 * 114.00171 * 309.66692 * 20 19 18 36 36 H 1.09000 * 113.61922 * 334.57064 * 21 19 18 37 37 H 1.08999 * 113.61689 * 105.47008 * 21 19 18 38 38 H 1.09005 * 113.61134 * 270.88438 * 22 21 19 39 39 H 1.08994 * 113.62071 * 139.98148 * 22 21 19 40 40 H 1.09000 * 113.61578 * 254.52872 * 23 19 18 41 41 H 1.09003 * 113.61302 * 25.43614 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7737 -1.2169 5 7 4.5834 -0.7725 -1.2172 6 6 5.3149 0.2982 -1.8989 7 6 5.5660 -0.0977 -3.3310 8 1 5.2154 -1.0513 -3.6971 9 6 6.2425 0.7580 -4.1744 10 7 6.4621 0.4122 -5.4241 11 14 6.8483 2.4078 -3.5415 12 1 8.2221 2.2555 -2.9986 13 1 6.8621 3.3904 -4.6549 14 1 5.9423 2.8891 -2.4678 15 6 5.2582 -1.7566 -0.5905 16 8 6.4710 -1.7553 -0.5904 17 6 4.5057 -2.8583 0.1102 18 6 5.5009 -3.8387 0.7341 19 6 4.7369 -4.9570 1.4460 20 8 3.7859 -5.6056 0.5993 21 6 4.1654 -4.5401 2.8114 22 6 4.5801 -5.9303 3.3213 23 6 5.6456 -5.9326 2.2124 24 1 2.9716 -0.4740 0.9114 25 1 2.9710 1.0275 -0.0445 26 1 2.7548 -0.2990 -2.1282 27 1 2.7555 -1.8005 -1.1725 28 1 4.7251 1.2146 -1.8733 29 1 6.2673 0.4651 -1.3957 30 1 6.9377 1.0144 -6.0175 31 1 3.8796 -3.3855 -0.6097 32 1 3.8786 -2.4298 0.8920 33 1 6.1273 -3.3119 1.4538 34 1 6.1277 -4.2672 -0.0480 35 1 3.1962 -4.9979 0.1324 36 1 4.7108 -3.7219 3.2817 37 1 3.0870 -4.3817 2.8034 38 1 3.8108 -6.6912 3.1893 39 1 4.9977 -5.9196 4.3281 40 1 5.7621 -6.8985 1.7208 41 1 6.5957 -5.4951 2.5190 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601011114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:56 Heat of formation + Delta-G solvation = -44.524273 kcal Electronic energy + Delta-G solvation = -22062.333018 eV Core-core repulsion = 18750.046570 eV Total energy + Delta-G solvation = -3312.286448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12005 -39.13506 -36.96427 -35.40160 -34.79226 -33.04138 -32.27736 -31.04487 -28.33413 -26.23050 -25.67945 -24.09671 -22.86033 -21.39406 -19.78660 -18.56157 -17.81962 -17.15775 -16.85264 -16.14645 -15.83800 -15.46197 -15.11665 -14.89141 -14.72316 -14.26992 -13.86042 -13.64269 -13.31453 -13.00947 -12.71669 -12.58080 -12.53424 -12.34131 -12.10773 -11.91836 -11.71823 -11.56286 -11.25961 -11.18740 -11.10262 -11.00653 -10.80182 -10.59930 -10.26221 -10.21621 -9.72219 -9.62312 -9.15654 -8.64888 -7.95155 -6.14341 -4.14152 2.63496 2.72073 3.17680 3.24126 3.29410 3.32044 3.50190 3.91640 4.05856 4.33656 4.37071 4.49925 4.66794 4.68587 4.87623 4.98158 5.05322 5.12145 5.12584 5.19318 5.35452 5.46533 5.53594 5.54437 5.57410 5.71132 5.72437 5.82647 5.90349 5.98250 6.13869 6.22548 6.28840 6.56380 6.83568 7.15669 7.48280 7.52536 7.53136 8.04635 8.39090 8.79581 8.89777 9.45077 10.98925 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.004811 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.731542 B = 5818.270059 C = 7060.160992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.214 3.786 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.510 3.490 16 O -0.531 6.531 17 C -0.147 4.147 18 C -0.120 4.120 19 C 0.107 3.893 20 O -0.544 6.544 21 C -0.167 4.167 22 C -0.136 4.136 23 C -0.128 4.128 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.377 0.623 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -6.743 16.294 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.094 3.906 7 C -0.571 4.571 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.297 3.703 16 O -0.408 6.408 17 C -0.187 4.187 18 C -0.158 4.158 19 C 0.066 3.934 20 O -0.350 6.350 21 C -0.204 4.204 22 C -0.174 4.174 23 C -0.165 4.165 24 H 0.125 0.875 25 H 0.133 0.867 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.226 0.774 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.266 -7.192 16.326 18.908 hybrid contribution 0.431 1.476 -0.174 1.548 sum -5.834 -5.715 16.151 18.099 Atomic orbital electron populations 1.81229 1.13001 1.08978 1.08681 1.29059 0.95056 0.93060 0.93133 1.19896 0.81486 1.05477 1.02369 1.21321 0.81808 1.00592 0.97155 1.47902 1.04910 1.26728 1.52937 1.19719 0.92523 0.85038 0.93336 1.21303 1.37340 1.05499 0.92922 0.90681 1.24864 0.95192 0.98196 0.94700 1.69897 1.41259 1.37038 1.05156 0.86867 0.80142 0.83977 0.78773 1.19904 1.21097 1.19005 1.20331 0.88107 0.82690 0.79140 1.90695 1.13915 1.75721 1.60439 1.21741 0.99724 0.96642 1.00569 1.21873 0.97807 0.94950 1.01198 1.22264 0.89884 0.92726 0.88505 1.86473 1.49163 1.37217 1.62169 1.23639 1.01537 0.97807 0.97456 1.22752 0.98941 0.97517 0.98149 1.23020 0.97387 0.99984 0.96095 0.87506 0.86706 0.88566 0.90271 0.95057 0.94307 0.92493 0.89292 0.89362 0.89971 0.90128 0.77418 0.89303 0.91136 0.90035 0.91570 0.90687 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.09 18.54 42.16 0.78 -5.30 16 2 C 0.22 2.35 15.43 -20.76 -0.32 2.03 16 3 C -0.05 -0.46 6.03 -29.52 -0.18 -0.63 16 4 C 0.12 1.42 5.17 -4.04 -0.02 1.40 16 5 N -0.59 -10.06 2.46 -175.06 -0.43 -10.49 16 6 C 0.21 4.63 4.23 -5.19 -0.02 4.61 16 7 C -0.53 -14.28 9.94 -34.44 -0.34 -14.62 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 11 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 15 C 0.51 8.67 7.67 -10.99 -0.08 8.59 16 16 O -0.53 -11.61 15.56 5.55 0.09 -11.52 16 17 C -0.15 -1.65 3.82 -27.89 -0.11 -1.76 16 18 C -0.12 -1.41 4.14 -26.73 -0.11 -1.52 16 19 C 0.11 1.08 1.38 -89.81 -0.12 0.96 16 20 O -0.54 -5.89 13.39 -35.23 -0.47 -6.36 16 21 C -0.17 -1.42 7.32 -25.92 -0.19 -1.61 16 22 C -0.14 -1.17 8.02 -25.92 -0.21 -1.37 16 23 C -0.13 -1.22 7.47 -25.92 -0.19 -1.42 16 24 H 0.11 0.73 7.22 -51.93 -0.38 0.35 16 25 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 28 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 29 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.09 0.87 6.01 -51.92 -0.31 0.56 16 32 H 0.09 0.73 7.10 -51.93 -0.37 0.36 16 33 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.38 2.96 7.18 45.56 0.33 3.29 16 36 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -34.42 343.53 -6.34 -40.75 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.59 Total: 1.32 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.00 Total: -3.40 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.13 Total: -41.76 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.39 Total: -17.88 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.42 -6.34 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601011114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.773 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds