Wall clock time and date at job start Tue Mar 31 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47136 * 57.52157 * 3 2 1 5 5 N 1.46498 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00131 * 269.99935 * 5 4 3 7 7 C 1.50695 * 109.47137 * 270.00075 * 6 5 4 8 8 H 1.07992 * 120.00343 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99693 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99660 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00152 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.46874 * 89.99869 * 11 9 7 13 13 H 1.48504 * 109.47082 * 209.99972 * 11 9 7 14 14 H 1.48497 * 109.47066 * 329.99878 * 11 9 7 15 15 C 1.34774 * 119.99918 * 89.99983 * 5 4 3 16 16 O 1.21283 * 119.99903 * 180.02562 * 15 5 4 17 17 C 1.50696 * 120.00235 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47144 * 179.97438 * 17 15 5 19 19 C 1.53006 * 109.46811 * 179.97438 * 18 17 15 20 20 O 1.42901 * 112.84973 * 53.80409 * 19 18 17 21 21 C 1.53772 * 113.61475 * 282.49623 * 19 18 17 22 22 C 1.53781 * 87.08354 * 220.02318 * 21 19 18 23 23 C 1.53781 * 113.61135 * 184.99718 * 19 18 17 24 24 H 1.09000 * 109.47363 * 297.52184 * 3 2 1 25 25 H 1.09002 * 109.47290 * 177.51969 * 3 2 1 26 26 H 1.09000 * 109.46972 * 59.99787 * 4 3 2 27 27 H 1.08998 * 109.47580 * 300.00206 * 4 3 2 28 28 H 1.09004 * 109.46876 * 30.00321 * 6 5 4 29 29 H 1.08998 * 109.47271 * 149.99832 * 6 5 4 30 30 H 0.97006 * 119.99354 * 179.97438 * 10 9 7 31 31 H 1.09009 * 109.47208 * 59.99839 * 17 15 5 32 32 H 1.09001 * 109.47093 * 300.00146 * 17 15 5 33 33 H 1.08992 * 109.47188 * 60.00163 * 18 17 15 34 34 H 1.08997 * 109.46828 * 299.99882 * 18 17 15 35 35 H 0.96698 * 114.00171 * 309.66692 * 20 19 18 36 36 H 1.09000 * 113.61922 * 334.57064 * 21 19 18 37 37 H 1.08999 * 113.61689 * 105.47008 * 21 19 18 38 38 H 1.09005 * 113.61134 * 270.88438 * 22 21 19 39 39 H 1.08994 * 113.62071 * 139.98148 * 22 21 19 40 40 H 1.09000 * 113.61578 * 254.52872 * 23 19 18 41 41 H 1.09003 * 113.61302 * 25.43614 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7737 -1.2169 5 7 4.5834 -0.7725 -1.2172 6 6 5.3149 0.2982 -1.8989 7 6 5.5660 -0.0977 -3.3310 8 1 5.2154 -1.0513 -3.6971 9 6 6.2425 0.7580 -4.1744 10 7 6.4621 0.4122 -5.4241 11 14 6.8483 2.4078 -3.5415 12 1 8.2221 2.2555 -2.9986 13 1 6.8621 3.3904 -4.6549 14 1 5.9423 2.8891 -2.4678 15 6 5.2582 -1.7566 -0.5905 16 8 6.4710 -1.7553 -0.5904 17 6 4.5057 -2.8583 0.1102 18 6 5.5009 -3.8387 0.7341 19 6 4.7369 -4.9570 1.4460 20 8 3.7859 -5.6056 0.5993 21 6 4.1654 -4.5401 2.8114 22 6 4.5801 -5.9303 3.3213 23 6 5.6456 -5.9326 2.2124 24 1 2.9716 -0.4740 0.9114 25 1 2.9710 1.0275 -0.0445 26 1 2.7548 -0.2990 -2.1282 27 1 2.7555 -1.8005 -1.1725 28 1 4.7251 1.2146 -1.8733 29 1 6.2673 0.4651 -1.3957 30 1 6.9377 1.0144 -6.0175 31 1 3.8796 -3.3855 -0.6097 32 1 3.8786 -2.4298 0.8920 33 1 6.1273 -3.3119 1.4538 34 1 6.1277 -4.2672 -0.0480 35 1 3.1962 -4.9979 0.1324 36 1 4.7108 -3.7219 3.2817 37 1 3.0870 -4.3817 2.8034 38 1 3.8108 -6.6912 3.1893 39 1 4.9977 -5.9196 4.3281 40 1 5.7621 -6.8985 1.7208 41 1 6.5957 -5.4951 2.5190 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601011114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:55 Heat of formation + Delta-G solvation = -69.167469 kcal Electronic energy + Delta-G solvation = -22063.401627 eV Core-core repulsion = 18750.046570 eV Total energy + Delta-G solvation = -3313.355058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12451 -40.21706 -37.97333 -36.70711 -35.56664 -34.84526 -33.48457 -32.24306 -29.93515 -27.22352 -26.48155 -25.20071 -24.29357 -22.51655 -20.52618 -19.82313 -19.16519 -18.51638 -18.16016 -17.17596 -16.97524 -16.61819 -16.01725 -15.85610 -15.80353 -15.67442 -14.92200 -14.66180 -14.52617 -14.32880 -14.10418 -13.72797 -13.51822 -13.44137 -13.25898 -13.03334 -12.78854 -12.76992 -12.55287 -12.37221 -12.09746 -11.96788 -11.93791 -11.75715 -11.68519 -11.63438 -11.01463 -10.77089 -10.61531 -10.44450 -9.43123 -8.27943 -6.32617 1.38506 1.42696 1.50053 1.71958 1.88709 1.89445 2.31893 2.36642 3.07067 3.16591 3.21327 3.61442 3.69706 3.77001 3.97668 4.04894 4.12778 4.15490 4.24130 4.33147 4.58743 4.65576 4.71474 4.84428 4.87003 4.90577 4.92097 5.01401 5.06208 5.10962 5.14263 5.15138 5.31443 5.44537 5.53397 5.54332 5.66241 6.29494 6.64901 6.70678 6.73981 6.88006 7.28414 7.49170 8.89087 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.004811 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.731542 B = 5818.270059 C = 7060.160992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.245 3.755 3 C -0.037 4.037 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.221 3.779 7 C -0.534 4.534 8 H 0.028 0.972 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.226 1.226 15 C 0.502 3.498 16 O -0.590 6.590 17 C -0.134 4.134 18 C -0.115 4.115 19 C 0.107 3.893 20 O -0.559 6.559 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.138 4.138 24 H 0.142 0.858 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.389 0.611 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -5.710 19.215 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.098 3.902 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.768 3.232 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.149 1.149 15 C 0.292 3.708 16 O -0.470 6.470 17 C -0.174 4.174 18 C -0.153 4.153 19 C 0.066 3.934 20 O -0.368 6.368 21 C -0.193 4.193 22 C -0.170 4.170 23 C -0.176 4.176 24 H 0.160 0.840 25 H 0.144 0.856 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.240 0.760 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.787 -6.166 19.273 21.682 hybrid contribution 0.902 1.025 -1.161 1.793 sum -6.884 -5.140 18.112 20.046 Atomic orbital electron populations 1.81281 1.14619 1.10730 1.10372 1.29198 0.95005 0.91470 0.91543 1.19866 0.79883 1.06013 1.02061 1.21548 0.78747 1.02882 0.98197 1.47877 1.06820 1.25767 1.52133 1.19393 0.93172 0.87471 0.90117 1.21647 1.36330 1.03483 0.95797 0.95359 1.25882 0.95525 1.02875 0.94734 1.70074 1.43072 1.38969 1.06988 0.85758 0.79735 0.78593 0.79127 1.20460 1.20975 1.14851 1.21344 0.87762 0.83184 0.78505 1.90670 1.16730 1.76982 1.62645 1.21769 0.99429 0.94553 1.01612 1.21801 0.97780 0.95514 1.00236 1.22271 0.89984 0.92175 0.88986 1.86462 1.49479 1.38203 1.62629 1.23608 1.02319 0.97935 0.95475 1.22729 0.98246 0.97648 0.98383 1.23135 0.98189 0.99432 0.96810 0.83997 0.85594 0.90138 0.87519 0.92276 0.95804 0.92556 0.87375 0.84869 0.90248 0.93653 0.76000 0.88150 0.89913 0.90501 0.90215 0.91943 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.35 18.54 20.01 0.37 -11.98 16 2 C 0.25 4.47 15.43 89.44 1.38 5.85 16 3 C -0.04 -0.50 6.03 28.79 0.17 -0.32 16 4 C 0.11 2.33 5.17 86.38 0.45 2.77 16 5 N -0.60 -19.10 2.46 -826.17 -2.03 -21.13 16 6 C 0.22 9.29 4.23 85.63 0.36 9.65 16 7 C -0.53 -29.28 9.94 25.60 0.25 -29.03 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 9 C 0.01 0.41 5.47 84.66 0.46 0.87 16 10 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 11 Si 0.94 41.95 27.47 68.60 1.88 43.83 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 15 C 0.50 16.42 7.67 87.66 0.67 17.09 16 16 O -0.59 -26.09 15.56 -3.04 -0.05 -26.14 16 17 C -0.13 -2.63 3.82 29.85 0.11 -2.51 16 18 C -0.11 -2.55 4.14 30.60 0.13 -2.42 16 19 C 0.11 1.93 1.38 -10.27 -0.01 1.92 16 20 O -0.56 -10.95 13.39 -148.98 -1.99 -12.95 16 21 C -0.16 -2.08 7.32 31.12 0.23 -1.85 16 22 C -0.13 -1.94 8.02 31.12 0.25 -1.69 16 23 C -0.14 -2.50 7.47 31.12 0.23 -2.26 16 24 H 0.14 1.02 7.22 -2.39 -0.02 1.00 16 25 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 27 H 0.11 1.66 6.44 -2.39 -0.02 1.64 16 28 H 0.06 2.18 7.13 -2.38 -0.02 2.16 16 29 H 0.02 1.09 6.85 -2.39 -0.02 1.08 16 30 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.11 1.75 6.01 -2.38 -0.01 1.74 16 32 H 0.13 1.44 7.10 -2.39 -0.02 1.43 16 33 H 0.08 1.80 8.01 -2.39 -0.02 1.78 16 34 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.39 4.97 7.18 -74.06 -0.53 4.44 16 36 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -80.50 343.53 3.62 -76.88 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.45 Total: 11.98 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.69 Total: -1.93 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -1.36 Total: -91.67 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.04 Total: -39.08 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Total: -80.50 3.62 -76.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601011114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.709 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds