Wall clock time and date at job start Tue Mar 31 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46809 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47112 * 299.99552 * 3 2 1 6 6 H 1.48499 * 109.47381 * 60.00100 * 3 2 1 7 7 C 1.38950 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00041 * 174.05809 * 7 2 1 9 9 N 1.37102 * 120.00207 * 354.05621 * 7 2 1 10 10 C 1.34779 * 119.99656 * 43.33851 * 9 7 2 11 11 O 1.21291 * 120.00011 * 4.53021 * 10 9 7 12 12 C 1.50693 * 119.99837 * 184.53401 * 10 9 7 13 13 H 1.08999 * 109.40422 * 318.48676 * 12 10 9 14 14 C 1.53071 * 109.40205 * 198.66167 * 12 10 9 15 15 C 1.53299 * 108.44823 * 190.88552 * 14 12 10 16 16 C 1.52921 * 108.60685 * 67.63708 * 15 14 12 17 17 N 1.45756 * 110.49059 * 309.23082 * 16 15 14 18 18 C 1.33345 * 124.10368 * 19.07838 * 17 16 15 19 19 O 1.21283 * 118.24680 * 177.77734 * 18 17 16 20 20 C 1.46492 * 120.00164 * 223.33882 * 9 7 2 21 21 C 1.54886 * 110.75743 * 300.69236 * 20 9 7 22 22 C 1.54269 * 104.19664 * 156.25880 * 21 20 9 23 23 C 1.53868 * 106.59809 * 336.38537 * 22 21 20 24 24 C 1.54269 * 106.60070 * 0.02562 * 23 22 21 25 25 H 0.96997 * 119.99878 * 4.47565 * 1 2 3 26 26 H 1.08998 * 109.67280 * 310.70347 * 14 12 10 27 27 H 1.09000 * 109.67187 * 71.23446 * 14 12 10 28 28 H 1.08993 * 109.64236 * 307.89298 * 15 14 12 29 29 H 1.08991 * 109.62201 * 187.36595 * 15 14 12 30 30 H 1.09006 * 109.29402 * 188.92297 * 16 15 14 31 31 H 1.08997 * 109.30147 * 69.54782 * 16 15 14 32 32 H 0.96993 * 117.94630 * 199.05661 * 17 16 15 33 33 H 1.08998 * 110.81765 * 177.35223 * 20 9 7 34 34 H 1.09001 * 110.49156 * 37.57622 * 21 20 9 35 35 H 1.09004 * 110.48500 * 274.93499 * 21 20 9 36 36 H 1.09007 * 110.03213 * 217.10361 * 22 21 20 37 37 H 1.09002 * 110.03236 * 95.67381 * 22 21 20 38 38 H 1.09000 * 110.03175 * 119.28506 * 23 22 21 39 39 H 1.09000 * 110.03560 * 240.66614 * 23 22 21 40 40 H 1.08998 * 110.49015 * 142.28726 * 24 23 22 41 41 H 1.09008 * 110.48055 * 264.79837 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0844 -1.2059 -0.0963 9 7 1.3289 -2.3875 0.1240 10 6 0.1896 -2.5856 -0.5683 11 8 -0.1906 -1.7511 -1.3622 12 6 -0.6119 -3.8440 -0.3560 13 1 0.0643 -4.6954 -0.2796 14 6 -1.5576 -4.0506 -1.5417 15 6 -2.5457 -5.1672 -1.1853 16 6 -3.4611 -4.6696 -0.0660 17 7 -2.6740 -4.1166 1.0290 18 6 -1.4056 -3.7218 0.9131 19 8 -0.8638 -3.2385 1.8846 20 6 1.8406 -3.4372 1.0084 21 6 3.2619 -3.8750 0.5756 22 6 3.8832 -4.4649 1.8586 23 6 3.1273 -3.8361 3.0422 24 6 2.0726 -2.8866 2.4372 25 1 -0.4850 0.8375 -0.0656 26 1 -2.1018 -3.1278 -1.7422 27 1 -0.9838 -4.3378 -2.4229 28 1 -1.9981 -6.0465 -0.8463 29 1 -3.1431 -5.4205 -2.0609 30 1 -4.0606 -5.5009 0.3053 31 1 -4.1239 -3.8985 -0.4586 32 1 -3.0996 -4.0300 1.8963 33 1 1.1630 -4.2907 1.0291 34 1 3.8381 -3.0156 0.2329 35 1 3.2062 -4.6338 -0.2050 36 1 4.9413 -4.2088 1.9129 37 1 3.7597 -5.5478 1.8695 38 1 2.6369 -4.6139 3.6276 39 1 3.8187 -3.2756 3.6714 40 1 1.1494 -2.9239 3.0154 41 1 2.4558 -1.8669 2.3972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:15 Heat of formation + Delta-G solvation = -58.193976 kcal Electronic energy + Delta-G solvation = -24021.867494 eV Core-core repulsion = 20708.988283 eV Total energy + Delta-G solvation = -3312.879211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09187 -38.12956 -36.53758 -35.86536 -33.26373 -32.39143 -31.24099 -29.29060 -27.88287 -26.62034 -25.41152 -23.63841 -22.24798 -20.09082 -19.67736 -19.52141 -18.18401 -17.01363 -16.31458 -15.93630 -15.70678 -14.91103 -14.64835 -14.41063 -14.05628 -13.63052 -13.30431 -13.24392 -13.10803 -12.60033 -12.49126 -12.28686 -11.66987 -11.31001 -11.08222 -10.99171 -10.88622 -10.76875 -10.59804 -10.53486 -10.48202 -10.28280 -10.20962 -9.98269 -9.73851 -9.56093 -9.01592 -8.63909 -8.61014 -7.77647 -6.85560 -5.70152 -3.70224 3.25365 3.38366 3.43813 3.46249 3.68150 4.39116 4.54927 4.86687 4.95911 5.14665 5.18817 5.31690 5.37240 5.38255 5.55414 5.57438 5.61239 5.79153 5.82004 5.95123 6.01783 6.12273 6.16832 6.23185 6.28367 6.36397 6.38792 6.49566 6.57605 6.63682 6.73539 6.78857 7.00883 7.18416 7.29257 7.40287 7.77140 7.79204 8.44489 8.84728 9.28217 9.39945 9.88940 10.58468 11.18160 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.008734 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.798653 B = 3204.963038 C = 4348.150570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.044 3.956 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.322 4.322 8 H 0.079 0.921 9 N -0.438 5.438 10 C 0.477 3.523 11 O -0.504 6.504 12 C -0.123 4.123 13 H 0.100 0.900 14 C -0.104 4.104 15 C -0.136 4.136 16 C 0.114 3.886 17 N -0.729 5.729 18 C 0.529 3.471 19 O -0.523 6.523 20 C 0.144 3.856 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.254 0.746 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.393 0.607 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -12.353 1.135 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.166 4.166 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.450 4.450 8 H 0.097 0.903 9 N -0.159 5.159 10 C 0.262 3.738 11 O -0.379 6.379 12 C -0.148 4.148 13 H 0.118 0.882 14 C -0.142 4.142 15 C -0.174 4.174 16 C -0.010 4.010 17 N -0.383 5.383 18 C 0.316 3.684 19 O -0.398 6.398 20 C 0.039 3.961 21 C -0.176 4.176 22 C -0.157 4.157 23 C -0.162 4.162 24 C -0.157 4.157 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.863 -11.542 1.039 11.938 hybrid contribution 0.069 0.757 0.419 0.868 sum -2.794 -10.786 1.458 11.237 Atomic orbital electron populations 1.70202 1.05822 1.25718 1.41985 1.25393 0.95025 0.98802 0.97408 0.86228 0.79700 0.83431 0.77338 1.19702 1.21227 1.21222 1.18937 0.91426 0.82095 1.52510 0.90350 1.43042 1.22484 1.13494 1.36851 1.19041 0.84016 0.86172 0.84531 1.90525 1.69026 1.42834 1.35470 1.21534 0.97759 1.02122 0.93353 0.88180 1.21460 0.96705 0.99122 0.96906 1.21893 0.98327 0.98973 0.98162 1.21277 0.93696 0.97806 0.88263 1.45439 1.13147 1.66090 1.13639 1.19892 0.81598 0.76787 0.90171 1.90769 1.68092 1.42203 1.38724 1.21817 0.92712 0.91106 0.90496 1.22746 0.98382 1.00309 0.96208 1.22047 0.99030 0.99010 0.95614 1.22114 0.98138 0.98750 0.97196 1.22521 0.97902 0.99452 0.95857 0.93515 0.89744 0.91007 0.91418 0.90135 0.91366 0.92144 0.77251 0.91442 0.90605 0.92940 0.92643 0.92857 0.92960 0.92743 0.91232 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -24.77 10.15 55.50 0.56 -24.21 16 2 C 0.04 1.27 5.09 -17.47 -0.09 1.18 16 3 Si 0.90 22.31 29.56 -169.99 -5.02 17.29 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.32 -9.00 7.60 -14.93 -0.11 -9.11 16 8 H 0.08 2.12 6.65 -52.49 -0.35 1.77 16 9 N -0.44 -11.31 2.55 -105.64 -0.27 -11.58 16 10 C 0.48 12.43 5.69 -10.99 -0.06 12.37 16 11 O -0.50 -15.06 12.75 5.55 0.07 -14.99 16 12 C -0.12 -2.47 1.96 -93.14 -0.18 -2.65 16 13 H 0.10 1.81 6.56 -51.93 -0.34 1.47 16 14 C -0.10 -1.74 4.98 -26.54 -0.13 -1.87 16 15 C -0.14 -1.59 6.02 -26.62 -0.16 -1.75 16 16 C 0.11 1.33 7.16 -4.48 -0.03 1.30 16 17 N -0.73 -11.27 5.45 -61.39 -0.33 -11.60 16 18 C 0.53 10.69 7.08 -11.87 -0.08 10.60 16 19 O -0.52 -12.47 13.81 5.55 0.08 -12.39 16 20 C 0.14 3.09 2.08 -65.95 -0.14 2.95 16 21 C -0.14 -2.54 6.39 -25.07 -0.16 -2.70 16 22 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 23 C -0.12 -2.06 6.80 -25.61 -0.17 -2.23 16 24 C -0.12 -2.51 6.14 -25.08 -0.15 -2.67 16 25 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.39 5.49 8.80 -40.82 -0.36 5.13 16 33 H 0.07 1.39 4.98 -51.93 -0.26 1.13 16 34 H 0.08 1.52 6.58 -51.93 -0.34 1.18 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.58 6.69 -51.93 -0.35 1.23 16 41 H 0.08 1.81 7.11 -51.92 -0.37 1.44 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -35.19 313.95 -7.96 -43.15 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.12 Total: 6.21 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.66 Total: 3.39 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.04 Total: -47.39 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.15 Total: -27.38 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.19 -7.96 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.044 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds