Wall clock time and date at job start Tue Mar 31 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46809 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47112 * 299.99552 * 3 2 1 6 6 H 1.48499 * 109.47381 * 60.00100 * 3 2 1 7 7 C 1.38950 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00041 * 174.05809 * 7 2 1 9 9 N 1.37102 * 120.00207 * 354.05621 * 7 2 1 10 10 C 1.34779 * 119.99656 * 43.33851 * 9 7 2 11 11 O 1.21291 * 120.00011 * 4.53021 * 10 9 7 12 12 C 1.50693 * 119.99837 * 184.53401 * 10 9 7 13 13 H 1.08999 * 109.40422 * 318.48676 * 12 10 9 14 14 C 1.53071 * 109.40205 * 198.66167 * 12 10 9 15 15 C 1.53299 * 108.44823 * 190.88552 * 14 12 10 16 16 C 1.52921 * 108.60685 * 67.63708 * 15 14 12 17 17 N 1.45756 * 110.49059 * 309.23082 * 16 15 14 18 18 C 1.33345 * 124.10368 * 19.07838 * 17 16 15 19 19 O 1.21283 * 118.24680 * 177.77734 * 18 17 16 20 20 C 1.46492 * 120.00164 * 223.33882 * 9 7 2 21 21 C 1.54886 * 110.75743 * 300.69236 * 20 9 7 22 22 C 1.54269 * 104.19664 * 156.25880 * 21 20 9 23 23 C 1.53868 * 106.59809 * 336.38537 * 22 21 20 24 24 C 1.54269 * 106.60070 * 0.02562 * 23 22 21 25 25 H 0.96997 * 119.99878 * 4.47565 * 1 2 3 26 26 H 1.08998 * 109.67280 * 310.70347 * 14 12 10 27 27 H 1.09000 * 109.67187 * 71.23446 * 14 12 10 28 28 H 1.08993 * 109.64236 * 307.89298 * 15 14 12 29 29 H 1.08991 * 109.62201 * 187.36595 * 15 14 12 30 30 H 1.09006 * 109.29402 * 188.92297 * 16 15 14 31 31 H 1.08997 * 109.30147 * 69.54782 * 16 15 14 32 32 H 0.96993 * 117.94630 * 199.05661 * 17 16 15 33 33 H 1.08998 * 110.81765 * 177.35223 * 20 9 7 34 34 H 1.09001 * 110.49156 * 37.57622 * 21 20 9 35 35 H 1.09004 * 110.48500 * 274.93499 * 21 20 9 36 36 H 1.09007 * 110.03213 * 217.10361 * 22 21 20 37 37 H 1.09002 * 110.03236 * 95.67381 * 22 21 20 38 38 H 1.09000 * 110.03175 * 119.28506 * 23 22 21 39 39 H 1.09000 * 110.03560 * 240.66614 * 23 22 21 40 40 H 1.08998 * 110.49015 * 142.28726 * 24 23 22 41 41 H 1.09008 * 110.48055 * 264.79837 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0844 -1.2059 -0.0963 9 7 1.3289 -2.3875 0.1240 10 6 0.1896 -2.5856 -0.5683 11 8 -0.1906 -1.7511 -1.3622 12 6 -0.6119 -3.8440 -0.3560 13 1 0.0643 -4.6954 -0.2796 14 6 -1.5576 -4.0506 -1.5417 15 6 -2.5457 -5.1672 -1.1853 16 6 -3.4611 -4.6696 -0.0660 17 7 -2.6740 -4.1166 1.0290 18 6 -1.4056 -3.7218 0.9131 19 8 -0.8638 -3.2385 1.8846 20 6 1.8406 -3.4372 1.0084 21 6 3.2619 -3.8750 0.5756 22 6 3.8832 -4.4649 1.8586 23 6 3.1273 -3.8361 3.0422 24 6 2.0726 -2.8866 2.4372 25 1 -0.4850 0.8375 -0.0656 26 1 -2.1018 -3.1278 -1.7422 27 1 -0.9838 -4.3378 -2.4229 28 1 -1.9981 -6.0465 -0.8463 29 1 -3.1431 -5.4205 -2.0609 30 1 -4.0606 -5.5009 0.3053 31 1 -4.1239 -3.8985 -0.4586 32 1 -3.0996 -4.0300 1.8963 33 1 1.1630 -4.2907 1.0291 34 1 3.8381 -3.0156 0.2329 35 1 3.2062 -4.6338 -0.2050 36 1 4.9413 -4.2088 1.9129 37 1 3.7597 -5.5478 1.8695 38 1 2.6369 -4.6139 3.6276 39 1 3.8187 -3.2756 3.6714 40 1 1.1494 -2.9239 3.0154 41 1 2.4558 -1.8669 2.3972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:15 Heat of formation + Delta-G solvation = -83.615959 kcal Electronic energy + Delta-G solvation = -24022.969874 eV Core-core repulsion = 20708.988283 eV Total energy + Delta-G solvation = -3313.981591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66358 -39.82158 -38.27683 -37.25691 -35.18387 -33.99159 -33.14434 -30.68243 -29.39162 -28.29293 -27.14086 -25.25380 -23.59444 -21.79725 -21.36522 -20.93385 -19.70691 -18.59751 -17.93887 -17.77188 -17.16490 -16.71576 -16.28627 -15.82960 -15.74848 -15.10914 -14.95201 -14.73244 -14.49990 -14.16164 -14.08774 -13.97004 -13.43770 -12.93646 -12.84587 -12.61735 -12.49997 -12.24285 -12.08295 -12.03819 -11.97287 -11.92528 -11.84494 -11.75763 -11.26604 -11.11092 -10.74433 -10.58331 -9.93858 -9.80071 -8.92528 -7.87403 -5.91268 1.37158 1.39303 1.49980 1.67674 2.27145 2.39308 2.81855 3.23711 3.28020 3.79579 3.85256 3.89649 3.94872 4.00405 4.05084 4.21828 4.32976 4.51052 4.59852 4.63266 4.74291 4.82720 4.86231 4.89003 4.93557 4.97128 5.08603 5.11593 5.15739 5.22150 5.29058 5.42858 5.48576 5.61753 5.65262 5.65718 6.01542 6.26759 6.39868 7.14514 7.34928 7.37839 7.85766 8.56647 8.99960 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.008734 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.798653 B = 3204.963038 C = 4348.150570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C -0.015 4.015 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.328 4.328 8 H 0.081 0.919 9 N -0.453 5.453 10 C 0.462 3.538 11 O -0.556 6.556 12 C -0.118 4.118 13 H 0.122 0.878 14 C -0.101 4.101 15 C -0.124 4.124 16 C 0.105 3.895 17 N -0.715 5.715 18 C 0.522 3.478 19 O -0.572 6.572 20 C 0.138 3.862 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.117 4.117 25 H 0.245 0.755 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -15.348 1.415 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.220 4.220 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.457 4.457 8 H 0.099 0.901 9 N -0.173 5.173 10 C 0.250 3.750 11 O -0.434 6.434 12 C -0.142 4.142 13 H 0.139 0.861 14 C -0.139 4.139 15 C -0.162 4.162 16 C -0.018 4.018 17 N -0.368 5.368 18 C 0.308 3.692 19 O -0.451 6.451 20 C 0.034 3.966 21 C -0.172 4.172 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.156 4.156 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.568 -14.591 1.326 14.875 hybrid contribution -0.069 1.623 0.307 1.654 sum -2.638 -12.968 1.633 13.334 Atomic orbital electron populations 1.70414 1.07484 1.25634 1.44499 1.26273 0.95816 1.02486 0.97457 0.85213 0.79325 0.79006 0.76847 1.17740 1.21605 1.21155 1.19215 0.91723 0.83308 1.51486 0.90136 1.43357 1.22624 1.13873 1.37429 1.19981 0.84115 0.87447 0.83506 1.90480 1.70176 1.45210 1.37546 1.21431 0.98244 0.99447 0.95117 0.86071 1.21450 0.97015 0.99671 0.95759 1.21911 0.97455 0.97211 0.99587 1.21680 0.93487 0.99358 0.87316 1.45391 1.11689 1.64409 1.15279 1.19928 0.83057 0.76774 0.89412 1.90754 1.69680 1.44621 1.40009 1.22043 0.94492 0.90140 0.89952 1.22696 0.95995 1.00092 0.98464 1.22023 0.99465 1.00429 0.92729 1.22068 0.97075 0.98267 0.97892 1.22409 0.98235 0.98845 0.96110 0.94555 0.93311 0.90468 0.89464 0.86649 0.86592 0.91988 0.76295 0.90516 0.92867 0.91175 0.90827 0.89897 0.91042 0.91503 0.93685 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -55.04 10.15 21.66 0.22 -54.82 16 2 C -0.02 -0.91 5.09 84.93 0.43 -0.47 16 3 Si 0.97 47.76 29.56 68.60 2.03 49.79 16 4 H -0.25 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.33 -19.11 7.60 84.04 0.64 -18.47 16 8 H 0.08 4.51 6.65 -2.91 -0.02 4.49 16 9 N -0.45 -24.19 2.55 -606.52 -1.54 -25.74 16 10 C 0.46 25.01 5.69 87.65 0.50 25.51 16 11 O -0.56 -35.01 12.75 -3.06 -0.04 -35.05 16 12 C -0.12 -4.75 1.96 -12.43 -0.02 -4.77 16 13 H 0.12 4.24 6.56 -2.39 -0.02 4.23 16 14 C -0.10 -3.29 4.98 30.72 0.15 -3.14 16 15 C -0.12 -2.45 6.02 30.67 0.18 -2.27 16 16 C 0.10 2.07 7.16 86.49 0.62 2.69 16 17 N -0.72 -21.01 5.45 -467.31 -2.55 -23.55 16 18 C 0.52 21.13 7.08 87.72 0.62 21.75 16 19 O -0.57 -28.09 13.81 -3.04 -0.04 -28.13 16 20 C 0.14 5.95 2.08 46.28 0.10 6.05 16 21 C -0.13 -4.76 6.39 31.67 0.20 -4.56 16 22 C -0.11 -3.00 6.80 31.32 0.21 -2.79 16 23 C -0.12 -3.58 6.80 31.32 0.21 -3.37 16 24 C -0.12 -5.06 6.14 31.66 0.19 -4.86 16 25 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.05 1.94 7.48 -2.39 -0.02 1.92 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 29 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.40 10.65 8.80 -92.71 -0.82 9.83 16 33 H 0.08 3.13 4.98 -2.39 -0.01 3.11 16 34 H 0.05 2.12 6.58 -2.39 -0.02 2.10 16 35 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 2.12 6.69 -2.39 -0.02 2.10 16 41 H 0.04 2.06 7.11 -2.38 -0.02 2.05 16 Total: -1.00 -83.88 313.95 2.35 -81.53 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.23 Total: 24.67 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 4.04 Total: 11.29 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -3.87 Total: -104.11 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -0.08 Total: -63.18 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -83.88 2.35 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.083 kcal (2) G-P(sol) polarization free energy of solvation -83.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds