Wall clock time and date at job start Tue Mar 31 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46469 * 109.46983 * 180.02562 * 9 7 2 11 11 N 1.39969 * 119.97561 * 270.12850 * 10 9 7 12 12 C 1.34762 * 119.98449 * 201.63813 * 11 10 9 13 13 O 1.21164 * 120.20819 * 179.56600 * 12 11 10 14 14 C 1.50771 * 119.56602 * 359.51049 * 12 11 10 15 15 C 1.54160 * 108.61912 * 322.75823 * 14 12 11 16 16 C 1.49713 * 109.48204 * 177.06510 * 15 14 12 17 17 C 1.53116 * 116.50083 * 206.04792 * 16 15 14 18 18 C 1.53608 * 115.02964 * 305.12719 * 17 16 15 19 19 C 1.50298 * 113.41909 * 335.57188 * 18 17 16 20 20 C 1.54243 * 108.43199 * 84.98401 * 19 18 17 21 21 C 1.45288 * 112.38388 * 270.50668 * 20 19 18 22 22 C 1.35114 * 119.61544 * 89.99785 * 10 9 7 23 23 O 1.21012 * 118.25516 * 359.71334 * 22 10 9 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 26 26 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 27 27 H 0.96919 * 120.06304 * 21.73168 * 11 10 9 28 28 H 1.08736 * 109.86794 * 203.46406 * 14 12 11 29 29 H 1.08753 * 109.81680 * 82.01134 * 14 12 11 30 30 H 1.09924 * 108.11617 * 328.12750 * 16 15 14 31 31 H 1.09706 * 108.47949 * 83.14722 * 16 15 14 32 32 H 1.10075 * 108.00213 * 184.84365 * 17 16 15 33 33 H 1.09022 * 109.76334 * 69.08634 * 17 16 15 34 34 H 1.09418 * 108.64796 * 214.91838 * 18 17 16 35 35 H 1.09048 * 109.35882 * 97.38961 * 18 17 16 36 36 H 1.08870 * 110.02370 * 324.80183 * 19 18 17 37 37 H 1.09131 * 109.56768 * 204.38382 * 19 18 17 38 38 H 1.09180 * 108.67946 * 150.03118 * 20 19 18 39 39 H 1.08919 * 109.07784 * 31.86929 * 20 19 18 40 40 H 1.09129 * 108.89341 * 306.40304 * 21 20 19 41 41 H 1.09109 * 108.78773 * 188.40708 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2025 -3.6125 0.0131 11 7 2.6645 -4.1455 -1.1959 12 6 3.1669 -5.3954 -1.2326 13 8 3.5608 -5.8637 -2.2784 14 6 3.2369 -6.2066 0.0364 15 6 3.6002 -5.2660 1.2025 16 6 3.6048 -6.0389 2.4847 17 6 3.3305 -5.2427 3.7634 18 6 4.2548 -4.0367 3.9889 19 6 5.5800 -4.1609 3.2907 20 6 5.4148 -3.6657 1.8393 21 6 5.0228 -4.7309 0.9324 22 6 2.6310 -4.1169 1.1910 23 8 2.2123 -3.6215 2.2126 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6205 -2.5547 0.8933 26 1 0.6280 -2.5591 -0.8867 27 1 2.6247 -3.6160 -2.0067 28 1 4.0037 -6.9720 -0.0561 29 1 2.2704 -6.6638 0.2355 30 1 2.8507 -6.8349 2.4066 31 1 4.5755 -6.5401 2.5851 32 1 3.4529 -5.9226 4.6204 33 1 2.2918 -4.9117 3.7760 34 1 4.4379 -3.9321 5.0626 35 1 3.7566 -3.1300 3.6441 36 1 5.9063 -5.1996 3.2924 37 1 6.3218 -3.5455 3.8024 38 1 6.3657 -3.2484 1.5019 39 1 4.6631 -2.8779 1.8153 40 1 5.7305 -5.5560 1.0295 41 1 5.0687 -4.3557 -0.0911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601931985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:29 Heat of formation + Delta-G solvation = -52.280585 kcal Electronic energy + Delta-G solvation = -24064.075355 eV Core-core repulsion = 20751.452568 eV Total energy + Delta-G solvation = -3312.622787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31943 -38.83265 -37.52805 -35.75264 -34.03776 -33.13315 -32.30548 -30.54043 -28.42904 -26.93975 -24.78138 -24.14134 -23.19975 -21.91072 -20.97401 -19.28203 -18.42229 -17.40203 -17.18152 -16.54434 -15.72394 -15.56731 -14.75844 -14.65933 -14.37695 -14.04912 -13.90554 -13.74610 -13.68062 -12.89271 -12.85595 -12.60934 -12.38003 -12.17166 -11.81473 -11.70736 -11.25613 -11.11905 -10.79485 -10.73378 -10.71212 -10.57125 -10.23078 -10.20564 -10.16710 -9.87128 -9.73528 -9.10404 -8.92439 -8.54394 -7.53949 -6.54106 -4.29428 2.43342 2.47422 3.16086 3.35223 3.39813 3.55220 3.79365 4.37610 4.40846 4.52912 4.73552 4.77764 5.09822 5.17611 5.20382 5.21265 5.36368 5.40452 5.48357 5.50491 5.60740 5.81867 5.94341 5.98556 6.01942 6.11586 6.20950 6.27011 6.40825 6.42661 6.50174 6.53774 6.61883 6.75525 6.86538 6.88428 7.25548 7.76255 8.06671 8.22968 8.26697 8.60777 8.83097 9.39961 10.82677 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.007435 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.668772 B = 3764.861355 C = 4605.524733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.613 4.613 8 H 0.056 0.944 9 C 0.239 3.761 10 N -0.400 5.400 11 N -0.508 5.508 12 C 0.518 3.482 13 O -0.545 6.545 14 C -0.134 4.134 15 C -0.068 4.068 16 C -0.089 4.089 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.099 4.099 22 C 0.524 3.476 23 O -0.501 6.501 24 H 0.268 0.732 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.423 0.577 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 -11.490 4.288 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.652 4.652 8 H 0.074 0.926 9 C 0.120 3.880 10 N -0.228 5.228 11 N -0.256 5.256 12 C 0.305 3.695 13 O -0.421 6.421 14 C -0.174 4.174 15 C -0.071 4.071 16 C -0.127 4.127 17 C -0.139 4.139 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.166 4.166 21 C -0.137 4.137 22 C 0.310 3.690 23 O -0.373 6.373 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.266 0.734 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.236 -9.930 4.472 13.654 hybrid contribution 0.173 -1.336 -0.546 1.454 sum 8.409 -11.267 3.926 14.597 Atomic orbital electron populations 1.70795 1.06812 1.30568 1.45720 1.25813 0.96341 1.02614 0.93249 0.83467 0.74768 0.74826 0.76821 1.21334 1.20734 1.21364 1.22222 0.94844 0.91231 1.56908 0.92596 1.19695 0.87363 0.82507 0.98386 1.48289 1.44595 1.34778 0.95106 1.45378 1.62188 1.13778 1.04286 1.20491 0.77225 0.80767 0.91043 1.90736 1.49544 1.69023 1.32818 1.22200 1.05221 0.98594 0.91405 1.20497 0.96034 0.94139 0.96470 1.20866 1.02321 0.97317 0.92215 1.21558 1.01877 0.95935 0.94540 1.21272 0.95094 1.00198 0.99033 1.21286 0.97559 1.00706 0.95289 1.20493 1.02064 0.98861 0.95151 1.20512 0.93344 0.99566 1.00236 1.19977 0.82124 0.84509 0.82353 1.90602 1.55745 1.59616 1.31334 0.92134 0.92840 0.95407 0.73404 0.87058 0.87914 0.92208 0.91433 0.93945 0.90189 0.93549 0.90210 0.92082 0.92442 0.92256 0.90738 0.91048 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.65 55.43 0.76 -25.36 16 2 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 3 Si 1.07 24.56 29.90 -169.99 -5.08 19.48 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.61 -16.31 9.38 -34.44 -0.32 -16.64 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 5.72 4.70 -5.21 -0.02 5.69 16 10 N -0.40 -8.04 3.45 -61.60 -0.21 -8.26 16 11 N -0.51 -9.00 6.17 31.22 0.19 -8.81 16 12 C 0.52 8.46 6.42 -10.96 -0.07 8.39 16 13 O -0.55 -10.10 17.94 5.66 0.10 -10.00 16 14 C -0.13 -1.75 4.72 -27.24 -0.13 -1.88 16 15 C -0.07 -0.97 0.50 -156.14 -0.08 -1.04 16 16 C -0.09 -1.09 4.25 -28.30 -0.12 -1.21 16 17 C -0.10 -1.39 4.92 -26.36 -0.13 -1.51 16 18 C -0.12 -1.70 5.15 -27.76 -0.14 -1.84 16 19 C -0.11 -1.41 5.57 -27.43 -0.15 -1.56 16 20 C -0.13 -1.86 5.13 -29.71 -0.15 -2.02 16 21 C -0.10 -1.36 3.88 -29.64 -0.12 -1.47 16 22 C 0.52 9.85 5.09 -11.01 -0.06 9.80 16 23 O -0.50 -10.72 10.76 5.79 0.06 -10.66 16 24 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 25 H 0.05 1.40 7.19 -51.93 -0.37 1.02 16 26 H 0.03 0.67 8.01 -51.93 -0.42 0.26 16 27 H 0.42 7.34 8.89 -182.77 -1.62 5.71 16 28 H 0.11 1.20 8.11 -52.08 -0.42 0.77 16 29 H 0.10 1.22 7.97 -52.07 -0.41 0.80 16 30 H 0.06 0.64 7.72 -51.40 -0.40 0.25 16 31 H 0.07 0.69 6.54 -51.53 -0.34 0.35 16 32 H 0.04 0.49 8.23 -51.32 -0.42 0.07 16 33 H 0.08 1.29 6.40 -51.92 -0.33 0.96 16 34 H 0.05 0.60 8.18 -51.69 -0.42 0.18 16 35 H 0.08 1.43 5.70 -51.90 -0.30 1.13 16 36 H 0.06 0.67 6.56 -52.00 -0.34 0.33 16 37 H 0.06 0.67 8.15 -51.86 -0.42 0.25 16 38 H 0.06 0.79 8.15 -51.83 -0.42 0.37 16 39 H 0.07 1.37 6.06 -51.97 -0.31 1.05 16 40 H 0.07 0.80 7.65 -51.86 -0.40 0.41 16 41 H 0.06 0.94 6.76 -51.87 -0.35 0.59 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -30.28 309.68 -8.31 -38.59 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.21 Total: 5.05 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.59 Total: -4.71 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.74 Total: -42.42 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.66 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.28 -8.31 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.690 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds