Wall clock time and date at job start Tue Mar 31 2020 02:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00250 * 2 1 4 4 H 1.48500 * 109.47544 * 239.99867 * 3 2 1 5 5 H 1.48496 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46947 * 119.99727 * 3 2 1 7 7 C 1.37881 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47463 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47463 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47310 * 179.97438 * 12 11 10 14 14 N 1.31127 * 126.55086 * 90.25219 * 13 12 11 15 15 C 1.34499 * 105.61861 * 180.12070 * 14 13 12 16 16 C 1.50696 * 126.28944 * 179.89809 * 15 14 13 17 17 O 1.42891 * 109.47395 * 269.71606 * 16 15 14 18 18 C 1.42905 * 113.99873 * 180.02562 * 17 16 15 19 19 C 1.53786 * 113.61467 * 110.86351 * 18 17 16 20 20 C 1.53962 * 87.01719 * 89.22967 * 19 18 17 21 21 C 1.53781 * 113.61505 * 208.47211 * 18 17 16 22 22 N 1.29950 * 107.41977 * 359.64170 * 15 14 13 23 23 O 1.21301 * 110.24816 * 0.22704 * 22 15 14 24 24 H 0.96995 * 119.99937 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47042 * 60.00459 * 9 7 2 26 26 H 1.08997 * 109.47274 * 299.99897 * 9 7 2 27 27 H 1.09001 * 109.47227 * 60.00047 * 10 9 7 28 28 H 1.09005 * 109.47169 * 300.00010 * 10 9 7 29 29 H 1.09001 * 109.47101 * 59.99676 * 11 10 9 30 30 H 1.08997 * 109.46957 * 299.99751 * 11 10 9 31 31 H 1.09001 * 109.47227 * 59.99753 * 12 11 10 32 32 H 1.09005 * 109.47169 * 299.99716 * 12 11 10 33 33 H 1.08999 * 109.46613 * 149.71364 * 16 15 14 34 34 H 1.09002 * 109.47087 * 29.72389 * 16 15 14 35 35 H 1.09002 * 112.84917 * 339.66862 * 18 17 16 36 36 H 1.08993 * 113.61491 * 203.75088 * 19 18 17 37 37 H 1.09000 * 113.61138 * 334.65426 * 19 18 17 38 38 H 1.08997 * 113.53543 * 270.80998 * 20 19 18 39 39 H 1.08994 * 113.66446 * 139.93200 * 20 19 18 40 40 H 1.09001 * 113.61695 * 25.34840 * 21 18 17 41 41 H 1.08996 * 113.61580 * 156.17118 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7463 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4552 -0.0018 14 7 1.3340 -8.1335 -1.0552 15 6 0.7018 -9.2191 -0.5747 16 6 0.0682 -10.3163 -1.3906 17 8 -1.2989 -9.9900 -1.6476 18 6 -1.9957 -10.9712 -2.4183 19 6 -3.0683 -11.7326 -1.6216 20 6 -4.0526 -10.6269 -2.0447 21 6 -3.1430 -10.3909 -3.2620 22 7 0.7426 -9.1508 0.7224 23 8 1.3237 -8.1449 1.0717 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8718 -3.6045 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8538 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.1011 -6.0929 0.8881 32 1 3.1010 -6.0920 -0.8919 33 1 0.1203 -11.2552 -0.8393 34 1 0.6010 -10.4202 -2.3358 35 1 -1.3258 -11.6216 -2.9808 36 1 -3.3071 -12.7119 -2.0362 37 1 -2.8771 -11.7612 -0.5489 38 1 -4.0844 -9.7847 -1.3536 39 1 -5.0432 -10.9994 -2.3055 40 1 -3.0122 -9.3380 -3.5117 41 1 -3.4015 -11.0021 -4.1267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601965599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:42 Heat of formation + Delta-G solvation = 1.375974 kcal Electronic energy + Delta-G solvation = -20738.352018 eV Core-core repulsion = 17428.055954 eV Total energy + Delta-G solvation = -3310.296064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.74161 -40.43184 -37.66466 -37.33049 -36.30914 -35.10045 -33.58351 -31.03913 -29.08098 -27.50452 -26.59381 -25.85687 -24.98905 -24.06125 -22.25989 -21.78662 -20.66916 -19.22587 -18.72784 -18.37159 -17.72395 -16.85353 -16.70217 -16.44052 -16.35629 -15.60204 -15.48739 -15.19980 -14.63122 -14.30053 -13.74074 -13.70480 -13.54935 -13.41792 -13.32044 -13.18432 -12.78328 -12.73907 -12.40290 -12.28396 -12.17730 -12.11015 -11.81198 -11.71974 -11.44190 -11.35490 -11.24691 -11.15724 -10.85470 -10.61144 -10.51575 -8.16817 -6.27951 -0.01604 0.91781 1.42623 1.45840 1.53516 1.73514 2.25376 2.43916 2.78427 3.00399 3.16639 3.61104 3.66937 3.77866 3.90327 4.01111 4.03754 4.07227 4.08702 4.29129 4.39039 4.43450 4.65058 4.69200 4.77500 4.79818 4.81126 4.85645 4.90448 4.98765 5.06115 5.16791 5.19315 5.30750 5.32463 5.34322 5.58775 5.81660 5.91471 6.09471 6.28277 6.90953 7.00427 7.41635 8.95075 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021287 B = 0.002609 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.055575 B =10730.247865 C =11687.890585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.107 4.107 12 C -0.020 4.020 13 C 0.202 3.798 14 N -0.497 5.497 15 C 0.159 3.841 16 C 0.159 3.841 17 O -0.390 6.390 18 C 0.053 3.947 19 C -0.155 4.155 20 C -0.144 4.144 21 C -0.141 4.141 22 N -0.389 5.389 23 O 0.076 5.924 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.011 1.011 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -25.851 -4.457 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.146 4.146 12 C -0.058 4.058 13 C -0.017 4.017 14 N -0.231 5.231 15 C -0.114 4.114 16 C 0.081 3.919 17 O -0.309 6.309 18 C -0.004 4.004 19 C -0.192 4.192 20 C -0.181 4.181 21 C -0.178 4.178 22 N -0.099 5.099 23 O 0.017 5.983 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.007 0.993 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.351 -26.307 -4.327 26.663 hybrid contribution -0.068 1.192 0.144 1.203 sum -0.419 -25.115 -4.183 25.464 Atomic orbital electron populations 1.70111 1.07992 1.27735 1.52027 1.26045 0.95736 1.03602 0.94928 0.85489 0.78204 0.77975 0.79320 1.19017 1.21292 1.18925 1.21747 0.93822 0.92262 1.50022 0.91501 1.19062 0.94723 0.93624 0.94522 1.21414 0.97877 0.91909 1.02004 1.21518 0.97814 0.93453 1.01806 1.20546 0.96098 0.80754 1.08402 1.29463 0.94819 0.97740 0.79723 1.71920 1.16146 1.05374 1.29626 1.25932 0.99753 0.97377 0.88364 1.20613 0.82328 0.90812 0.98142 1.87914 1.22234 1.46700 1.74003 1.23377 0.93405 0.90445 0.93193 1.23495 0.95999 0.99048 1.00671 1.22830 0.98805 0.98714 0.97756 1.23239 0.94704 1.02025 0.97826 1.74598 1.14845 1.04322 1.16142 1.85280 1.52039 1.24759 1.36235 0.92932 0.99630 0.99307 0.91261 0.91807 0.93168 0.92322 0.84829 0.85335 0.88360 0.87845 0.87920 0.86483 0.92037 0.92424 0.89862 0.92373 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.09 -3.51 5.15 30.59 0.16 -3.35 16 11 C -0.11 -3.33 5.20 30.59 0.16 -3.17 16 12 C -0.02 -0.43 5.84 29.85 0.17 -0.26 16 13 C 0.20 5.44 7.77 88.38 0.69 6.12 16 14 N -0.50 -14.68 11.55 -303.21 -3.50 -18.18 16 15 C 0.16 4.45 7.85 138.46 1.09 5.53 16 16 C 0.16 3.27 6.40 71.23 0.46 3.72 16 17 O -0.39 -9.43 10.26 -148.98 -1.53 -10.96 16 18 C 0.05 0.85 4.36 31.12 0.14 0.99 16 19 C -0.15 -2.16 7.93 31.18 0.25 -1.92 16 20 C -0.14 -2.36 8.02 31.18 0.25 -2.11 16 21 C -0.14 -2.17 7.91 31.12 0.25 -1.92 16 22 N -0.39 -11.59 12.16 -60.31 -0.73 -12.32 16 23 O 0.08 2.16 11.31 74.89 0.85 3.01 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.07 7.88 -2.39 -0.02 1.05 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.16 349.59 2.84 -69.33 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.00 Total: 6.04 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.44 Total: -25.32 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.95 Total: -88.25 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.68 Total: -7.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.16 2.84 -69.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601965599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.702 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds