Wall clock time and date at job start Tue Mar 31 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00224 * 3 2 1 5 5 H 1.48503 * 109.47331 * 30.00173 * 3 2 1 6 6 H 1.48494 * 109.47092 * 150.00020 * 3 2 1 7 7 C 1.37874 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46815 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47057 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00210 * 179.97438 * 12 11 10 14 14 O 1.21339 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99767 * 179.97438 * 13 12 11 16 16 O 1.21341 * 120.00524 * 359.72844 * 15 13 12 17 17 N 1.34784 * 119.99762 * 179.97438 * 15 13 12 18 18 C 1.46499 * 119.99893 * 179.72897 * 17 15 13 19 19 C 1.53003 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.54634 * 111.03334 * 287.01724 * 19 18 17 21 21 C 1.51110 * 104.72601 * 217.33688 * 20 19 18 22 22 C 1.30523 * 111.10090 * 16.44223 * 21 20 19 23 23 C 1.51097 * 111.10861 * 359.97438 * 22 21 20 24 24 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 26 26 H 1.09001 * 109.46875 * 299.99700 * 9 7 2 27 27 H 1.08993 * 109.47057 * 60.00046 * 10 9 7 28 28 H 1.09001 * 109.47095 * 299.99718 * 10 9 7 29 29 H 1.08993 * 109.47254 * 60.00186 * 11 10 9 30 30 H 1.09001 * 109.47075 * 299.99750 * 11 10 9 31 31 H 0.97004 * 119.99753 * 359.97438 * 12 11 10 32 32 H 0.97005 * 119.99846 * 359.72685 * 17 15 13 33 33 H 1.08998 * 109.47134 * 299.99552 * 18 17 15 34 34 H 1.08994 * 109.47397 * 59.99843 * 18 17 15 35 35 H 1.08999 * 110.91808 * 51.02864 * 19 18 17 36 36 H 1.09001 * 110.39225 * 336.14980 * 20 19 18 37 37 H 1.09006 * 110.38784 * 98.52564 * 20 19 18 38 38 H 1.08002 * 124.44627 * 196.45836 * 21 20 19 39 39 H 1.08000 * 124.44846 * 180.02562 * 22 21 20 40 40 H 1.09000 * 110.39353 * 224.75545 * 23 22 21 41 41 H 1.08998 * 110.38759 * 102.37612 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0398 -4.0179 -0.0009 13 6 7.3649 -4.2642 -0.0016 14 8 8.1534 -3.3419 -0.0011 15 6 7.8629 -5.6732 -0.0017 16 8 7.0744 -6.5955 0.0037 17 7 9.1881 -5.9196 -0.0030 18 6 9.6763 -7.3008 0.0029 19 6 11.2063 -7.3008 0.0007 20 6 11.7594 -6.8849 -1.3821 21 6 12.9816 -7.7505 -1.5832 22 6 12.9827 -8.7611 -0.7572 23 6 11.7619 -8.7378 0.1329 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6585 -3.1503 -0.8903 28 1 3.6578 -3.1507 0.8897 29 1 5.9149 -2.1230 0.8898 30 1 5.9148 -2.1228 -0.8901 31 1 5.4094 -4.7551 -0.0009 32 1 9.8184 -5.1823 -0.0077 33 1 9.3147 -7.8102 0.8960 34 1 9.3114 -7.8190 -0.8839 35 1 11.5966 -6.6567 0.7887 36 1 11.0224 -7.0817 -2.1608 37 1 12.0371 -5.8308 -1.3787 38 1 13.7529 -7.5581 -2.3142 39 1 13.7552 -9.5147 -0.7148 40 1 12.0412 -8.9437 1.1661 41 1 11.0252 -9.4624 -0.2139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602244540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:27 Heat of formation + Delta-G solvation = -72.276328 kcal Electronic energy + Delta-G solvation = -20591.524755 eV Core-core repulsion = 17278.034887 eV Total energy + Delta-G solvation = -3313.489868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73812 -39.40946 -38.39712 -35.92075 -34.97411 -33.32311 -31.48552 -30.71887 -28.65174 -27.73678 -26.04046 -23.94453 -22.25511 -21.00192 -20.74753 -19.97545 -19.20357 -18.43763 -17.05849 -16.74682 -16.52817 -16.15486 -15.93386 -15.38197 -15.04326 -14.58148 -14.15361 -13.95769 -13.65128 -13.22718 -13.18920 -12.73182 -12.60104 -12.18437 -12.09101 -11.97579 -11.75344 -11.71788 -11.63220 -11.39363 -11.11980 -10.92605 -10.18463 -9.98802 -9.79336 -9.53257 -9.52977 -9.35192 -9.24537 -9.07867 -8.56657 -6.07063 -4.06059 1.36075 1.80800 2.27564 3.16511 3.30076 3.37761 3.41209 3.57167 4.05961 4.10032 4.31317 4.43093 4.45550 4.77075 4.79744 4.98676 5.19531 5.26583 5.26942 5.27500 5.34760 5.43119 5.48136 5.52874 5.56104 5.74774 5.92390 5.94310 6.07653 6.15137 6.38215 6.41879 6.53028 6.73276 6.84662 7.19444 7.32821 7.32898 7.66021 7.74257 7.97525 8.49315 8.97007 9.54713 11.06122 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.051961 B = 0.002271 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.736738 B =12325.377574 C =12690.795985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.703 5.703 18 C 0.127 3.873 19 C -0.108 4.108 20 C -0.101 4.101 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.092 4.092 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.413 0.587 32 H 0.413 0.587 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.292 -16.641 -0.771 31.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.405 6.405 15 C 0.288 3.712 16 O -0.394 6.394 17 N -0.357 5.357 18 C 0.004 3.996 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.183 4.183 22 C -0.187 4.187 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.249 0.751 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.094 -16.517 -0.760 30.892 hybrid contribution 0.409 0.882 -0.080 0.975 sum 26.503 -15.635 -0.839 30.782 Atomic orbital electron populations 1.69918 1.06307 1.26953 1.50901 1.25037 0.94767 0.99243 0.94482 0.86767 0.80369 0.83527 0.78565 1.20247 1.21366 1.18923 1.21090 0.89253 0.94576 1.51154 0.90933 1.19505 0.97375 0.91257 0.96713 1.21744 0.90125 1.01270 1.02194 1.21849 0.96674 0.80089 1.02475 1.46021 1.06097 1.11109 1.71070 1.20015 0.83970 0.89013 0.78923 1.90752 1.55275 1.45501 1.48924 1.20310 0.83262 0.89900 0.77684 1.90770 1.55225 1.45761 1.47688 1.45747 1.06733 1.09726 1.73515 1.21501 0.92697 0.82297 1.03116 1.22315 0.93729 0.98103 0.98546 1.21529 0.95958 0.99869 0.96490 1.23299 0.98296 0.97036 0.99644 1.23257 0.98377 0.98999 0.98070 1.21330 0.95859 0.95834 0.99976 0.92685 0.96239 0.96666 0.91809 0.91775 0.91096 0.91107 0.75126 0.75056 0.90613 0.90642 0.89167 0.90170 0.90748 0.85827 0.85765 0.90653 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 12 N -0.69 -9.83 5.55 -60.73 -0.34 -10.17 16 13 C 0.50 7.09 7.89 -11.59 -0.09 7.00 16 14 O -0.53 -8.44 16.48 5.51 0.09 -8.35 16 15 C 0.51 6.34 7.89 -11.58 -0.09 6.25 16 16 O -0.52 -7.53 16.48 5.50 0.09 -7.44 16 17 N -0.70 -6.54 5.50 -60.73 -0.33 -6.88 16 18 C 0.13 0.94 4.99 -4.04 -0.02 0.92 16 19 C -0.11 -0.62 3.16 -88.90 -0.28 -0.90 16 20 C -0.10 -0.61 6.33 -26.82 -0.17 -0.78 16 21 C -0.16 -0.97 10.78 -35.69 -0.38 -1.35 16 22 C -0.17 -0.94 10.77 -35.70 -0.38 -1.32 16 23 C -0.09 -0.48 6.38 -26.83 -0.17 -0.65 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 26 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 5.41 7.94 -40.82 -0.32 5.08 16 32 H 0.41 3.42 7.95 -40.82 -0.32 3.10 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.52 7.74 -51.93 -0.40 0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.41 7.89 -51.93 -0.41 0.00 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -32.45 346.24 -7.92 -40.37 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.45 Total: 2.14 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.30 Total: -4.88 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.10 Total: -43.94 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.18 Total: -15.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.45 -7.92 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602244540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.909 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds