Wall clock time and date at job start Tue Mar 31 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00224 * 3 2 1 5 5 H 1.48503 * 109.47331 * 30.00173 * 3 2 1 6 6 H 1.48494 * 109.47092 * 150.00020 * 3 2 1 7 7 C 1.37874 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46815 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47057 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00210 * 179.97438 * 12 11 10 14 14 O 1.21339 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99767 * 179.97438 * 13 12 11 16 16 O 1.21341 * 120.00524 * 359.72844 * 15 13 12 17 17 N 1.34784 * 119.99762 * 179.97438 * 15 13 12 18 18 C 1.46499 * 119.99893 * 179.72897 * 17 15 13 19 19 C 1.53003 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.54634 * 111.03334 * 287.01724 * 19 18 17 21 21 C 1.51110 * 104.72601 * 217.33688 * 20 19 18 22 22 C 1.30523 * 111.10090 * 16.44223 * 21 20 19 23 23 C 1.51097 * 111.10861 * 359.97438 * 22 21 20 24 24 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 26 26 H 1.09001 * 109.46875 * 299.99700 * 9 7 2 27 27 H 1.08993 * 109.47057 * 60.00046 * 10 9 7 28 28 H 1.09001 * 109.47095 * 299.99718 * 10 9 7 29 29 H 1.08993 * 109.47254 * 60.00186 * 11 10 9 30 30 H 1.09001 * 109.47075 * 299.99750 * 11 10 9 31 31 H 0.97004 * 119.99753 * 359.97438 * 12 11 10 32 32 H 0.97005 * 119.99846 * 359.72685 * 17 15 13 33 33 H 1.08998 * 109.47134 * 299.99552 * 18 17 15 34 34 H 1.08994 * 109.47397 * 59.99843 * 18 17 15 35 35 H 1.08999 * 110.91808 * 51.02864 * 19 18 17 36 36 H 1.09001 * 110.39225 * 336.14980 * 20 19 18 37 37 H 1.09006 * 110.38784 * 98.52564 * 20 19 18 38 38 H 1.08002 * 124.44627 * 196.45836 * 21 20 19 39 39 H 1.08000 * 124.44846 * 180.02562 * 22 21 20 40 40 H 1.09000 * 110.39353 * 224.75545 * 23 22 21 41 41 H 1.08998 * 110.38759 * 102.37612 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0398 -4.0179 -0.0009 13 6 7.3649 -4.2642 -0.0016 14 8 8.1534 -3.3419 -0.0011 15 6 7.8629 -5.6732 -0.0017 16 8 7.0744 -6.5955 0.0037 17 7 9.1881 -5.9196 -0.0030 18 6 9.6763 -7.3008 0.0029 19 6 11.2063 -7.3008 0.0007 20 6 11.7594 -6.8849 -1.3821 21 6 12.9816 -7.7505 -1.5832 22 6 12.9827 -8.7611 -0.7572 23 6 11.7619 -8.7378 0.1329 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6585 -3.1503 -0.8903 28 1 3.6578 -3.1507 0.8897 29 1 5.9149 -2.1230 0.8898 30 1 5.9148 -2.1228 -0.8901 31 1 5.4094 -4.7551 -0.0009 32 1 9.8184 -5.1823 -0.0077 33 1 9.3147 -7.8102 0.8960 34 1 9.3114 -7.8190 -0.8839 35 1 11.5966 -6.6567 0.7887 36 1 11.0224 -7.0817 -2.1608 37 1 12.0371 -5.8308 -1.3787 38 1 13.7529 -7.5581 -2.3142 39 1 13.7552 -9.5147 -0.7148 40 1 12.0412 -8.9437 1.1661 41 1 11.0252 -9.4624 -0.2139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602244540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:26 Heat of formation + Delta-G solvation = -95.006432 kcal Electronic energy + Delta-G solvation = -20592.510406 eV Core-core repulsion = 17278.034887 eV Total energy + Delta-G solvation = -3314.475519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75411 -40.09361 -39.31085 -37.22742 -35.93628 -35.08976 -33.29438 -31.33429 -29.34937 -29.06765 -26.97870 -25.19260 -23.56198 -22.28000 -21.66825 -20.98343 -19.68501 -19.46784 -18.85330 -17.97994 -17.31987 -16.98998 -16.70300 -16.59122 -16.22844 -16.07865 -15.43724 -15.07478 -14.77428 -14.65776 -14.06254 -13.81246 -13.63247 -13.60715 -13.00754 -12.95240 -12.74626 -12.70086 -12.59156 -12.22160 -12.04026 -11.91466 -11.87588 -11.77823 -11.60379 -11.33310 -10.75213 -10.73008 -10.36334 -10.26043 -9.76856 -8.28151 -6.32609 0.30470 1.28357 1.38755 1.39890 1.40413 1.52168 2.10427 2.37763 2.61408 3.07522 3.39236 3.57768 3.65076 3.84884 4.02160 4.17742 4.29945 4.38216 4.48158 4.49552 4.64712 4.80801 4.81742 4.85221 4.86678 4.88376 5.00773 5.02050 5.11133 5.13309 5.18208 5.34226 5.46652 5.55687 5.65300 5.67117 5.89084 6.01078 6.28300 6.31640 6.69021 6.75796 6.90287 7.32067 8.88361 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.051961 B = 0.002271 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.736738 B =12325.377574 C =12690.795985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.105 4.105 11 C 0.124 3.876 12 N -0.689 5.689 13 C 0.503 3.497 14 O -0.546 6.546 15 C 0.512 3.488 16 O -0.543 6.543 17 N -0.687 5.687 18 C 0.127 3.873 19 C -0.101 4.101 20 C -0.104 4.104 21 C -0.177 4.177 22 C -0.172 4.172 23 C -0.094 4.094 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.418 0.582 32 H 0.420 0.580 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.917 -16.541 -0.628 33.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.341 5.341 13 C 0.284 3.716 14 O -0.424 6.424 15 C 0.292 3.708 16 O -0.420 6.420 17 N -0.340 5.340 18 C 0.005 3.995 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.195 4.195 22 C -0.189 4.189 23 C -0.131 4.131 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.255 0.745 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.103 0.897 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 28.765 -16.444 -0.617 33.139 hybrid contribution -0.421 0.745 -0.130 0.865 sum 28.344 -15.699 -0.747 32.410 Atomic orbital electron populations 1.70076 1.08339 1.28139 1.52679 1.26045 0.95642 1.03647 0.94190 0.85645 0.79581 0.78142 0.79213 1.19194 1.21221 1.16686 1.21480 0.92072 0.93189 1.50334 0.94743 1.19463 0.93927 0.94323 0.97185 1.21524 0.92038 0.98464 1.02254 1.21550 0.94526 0.81093 1.02717 1.45902 1.06523 1.10612 1.71072 1.20270 0.83565 0.89651 0.78153 1.90743 1.55635 1.46232 1.49760 1.19988 0.84083 0.88714 0.78021 1.90769 1.55953 1.45926 1.49372 1.45759 1.05707 1.10937 1.71572 1.21632 0.93846 0.80962 1.03079 1.22260 0.92274 0.98775 0.98662 1.21544 0.96008 1.00142 0.96383 1.23433 0.98553 0.97322 1.00224 1.23455 0.98633 0.99076 0.97779 1.21364 0.95814 0.95359 1.00568 0.92547 0.95640 0.95753 0.91833 0.91830 0.90910 0.90858 0.74463 0.74272 0.90408 0.90893 0.88505 0.90821 0.90526 0.85129 0.84639 0.89702 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.76 5.27 30.60 0.16 -3.59 16 11 C 0.12 3.73 5.67 86.38 0.49 4.22 16 12 N -0.69 -18.59 5.55 -464.43 -2.58 -21.17 16 13 C 0.50 13.48 7.89 87.27 0.69 14.16 16 14 O -0.55 -16.51 16.48 -3.21 -0.05 -16.56 16 15 C 0.51 12.08 7.89 87.27 0.69 12.77 16 16 O -0.54 -15.16 16.48 -3.22 -0.05 -15.21 16 17 N -0.69 -11.67 5.50 -464.42 -2.55 -14.22 16 18 C 0.13 1.68 4.99 86.38 0.43 2.11 16 19 C -0.10 -0.97 3.16 -9.68 -0.03 -1.00 16 20 C -0.10 -1.09 6.33 30.53 0.19 -0.90 16 21 C -0.18 -1.81 10.78 26.27 0.28 -1.53 16 22 C -0.17 -1.59 10.77 26.26 0.28 -1.31 16 23 C -0.09 -0.80 6.38 30.53 0.19 -0.60 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 26 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.42 10.47 7.94 -92.71 -0.74 9.74 16 32 H 0.42 6.18 7.95 -92.70 -0.74 5.45 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.05 7.92 -2.39 -0.02 1.03 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.87 7.74 -2.39 -0.02 0.85 16 37 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.13 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 0.69 7.89 -2.39 -0.02 0.67 16 Total: -1.00 -69.34 346.24 0.67 -68.67 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.50 Total: 17.59 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 4.21 Total: -5.48 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -4.83 Total: -94.72 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.11 Total: -31.77 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -69.34 0.67 -68.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602244540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.334 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds