Wall clock time and date at job start Tue Mar 31 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00470 * 2 1 4 4 H 1.48499 * 109.47480 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.46966 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.47445 * 149.99983 * 3 2 1 7 7 C 1.37877 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00278 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00189 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47029 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46843 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99643 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00068 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00123 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.85387 * 300.69933 * 15 13 12 17 17 C 1.54620 * 110.97070 * 64.48840 * 15 13 12 18 18 C 1.51275 * 104.19813 * 142.91937 * 17 15 13 19 19 O 1.21285 * 124.94714 * 163.78146 * 18 17 15 20 20 N 1.34424 * 110.11496 * 343.75068 * 18 17 15 21 21 C 1.46501 * 124.35343 * 179.59323 * 20 18 17 22 22 C 1.53001 * 117.49651 * 8.58928 * 21 20 18 23 23 C 1.53002 * 117.49022 * 299.97022 * 21 20 18 24 24 C 1.46825 * 111.31403 * 359.62086 * 20 18 17 25 25 H 0.97009 * 119.99663 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46490 * 60.00314 * 9 7 2 27 27 H 1.08996 * 109.47365 * 300.00456 * 9 7 2 28 28 H 1.09002 * 109.47261 * 60.00204 * 10 9 7 29 29 H 1.08996 * 109.47294 * 299.99894 * 10 9 7 30 30 H 1.08998 * 109.46441 * 60.00212 * 11 10 9 31 31 H 1.08996 * 109.46829 * 299.99975 * 11 10 9 32 32 H 0.96995 * 120.00742 * 0.02562 * 12 11 10 33 33 H 1.09004 * 110.49298 * 261.59768 * 17 15 13 34 34 H 1.09003 * 110.48895 * 24.10563 * 17 15 13 35 35 H 1.08999 * 115.55281 * 154.30293 * 21 20 18 36 36 H 1.09006 * 117.49793 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.50001 * 145.02463 * 22 21 20 38 38 H 1.09010 * 117.49671 * 214.97592 * 23 21 20 39 39 H 1.08992 * 117.50673 * 359.97438 * 23 21 20 40 40 H 1.09002 * 110.23335 * 257.98952 * 24 20 18 41 41 H 1.08994 * 110.28160 * 135.97092 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 6 4.0213 -2.6368 -0.0023 11 6 5.5514 -2.6369 -0.0022 12 7 6.0395 -4.0181 -0.0040 13 6 7.3646 -4.2645 -0.0048 14 8 8.1528 -3.3427 -0.0045 15 6 7.8669 -5.6853 -0.0071 16 1 7.5062 -6.2259 0.8680 17 6 7.4647 -6.4123 -1.3111 18 6 8.6547 -7.2907 -1.6285 19 8 8.6430 -8.2224 -2.4048 20 7 9.7272 -6.8878 -0.9253 21 6 11.0444 -7.5260 -0.9884 22 6 11.2601 -8.5965 -2.0601 23 6 11.1347 -9.0004 -0.5897 24 6 9.4091 -5.7264 -0.0853 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6807 0.8890 27 1 3.8745 -0.6802 -0.8910 28 1 3.6576 -3.1500 -0.8925 29 1 3.6583 -3.1512 0.8875 30 1 5.9146 -2.1238 0.8882 31 1 5.9147 -2.1223 -0.8918 32 1 5.4092 -4.7553 -0.0053 33 1 6.5742 -7.0200 -1.1502 34 1 7.2946 -5.6928 -2.1122 35 1 11.8899 -6.8847 -0.7398 36 1 10.4221 -8.8256 -2.7184 37 1 12.2477 -8.6595 -2.5169 38 1 12.0400 -9.3291 -0.0791 39 1 10.2143 -9.4954 -0.2800 40 1 9.7879 -4.8136 -0.5451 41 1 9.8341 -5.8526 0.9104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:13 Heat of formation + Delta-G solvation = -49.901299 kcal Electronic energy + Delta-G solvation = -21194.750912 eV Core-core repulsion = 17882.231298 eV Total energy + Delta-G solvation = -3312.519614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25672 -39.56130 -36.96685 -36.43115 -35.58467 -33.44155 -31.94646 -31.07338 -28.14423 -27.30619 -24.20981 -23.22221 -22.70992 -22.31372 -20.80597 -19.83677 -19.51057 -17.75997 -17.24510 -16.87523 -16.26608 -15.96682 -15.43916 -15.28710 -14.86954 -14.43950 -14.22311 -14.00658 -13.80818 -13.63386 -13.36911 -13.00403 -12.74367 -12.14327 -12.04907 -11.92940 -11.83530 -11.73116 -11.31820 -11.15499 -10.94271 -10.80053 -10.35945 -10.07398 -9.92850 -9.80887 -9.63412 -9.27391 -9.03184 -8.85774 -8.59330 -6.09909 -4.08991 2.16664 2.40536 2.46762 3.08955 3.28225 3.36120 3.39409 3.49803 3.84568 3.97917 4.37632 4.40799 4.42462 4.49752 4.62170 4.70428 4.84479 5.07128 5.15637 5.24011 5.26218 5.34319 5.35300 5.45785 5.54285 5.56945 5.63646 5.90632 5.92579 6.21511 6.30904 6.36445 6.58122 6.70966 6.71706 7.16881 7.30346 7.43625 7.71891 7.80303 8.09703 8.46079 8.93724 9.52110 11.03256 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046306 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.524833 B =10816.751075 C =11152.861297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.720 5.720 13 C 0.521 3.479 14 O -0.538 6.538 15 C -0.125 4.125 16 H 0.119 0.881 17 C -0.146 4.146 18 C 0.522 3.478 19 O -0.526 6.526 20 N -0.592 5.592 21 C 0.079 3.921 22 C -0.190 4.190 23 C -0.190 4.190 24 C 0.120 3.880 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.479 -15.785 0.508 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.370 5.370 13 C 0.305 3.695 14 O -0.416 6.416 15 C -0.147 4.147 16 H 0.137 0.863 17 C -0.186 4.186 18 C 0.310 3.690 19 O -0.403 6.403 20 N -0.324 5.324 21 C -0.025 4.025 22 C -0.227 4.227 23 C -0.229 4.229 24 C -0.003 4.003 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.932 -15.479 0.106 26.845 hybrid contribution -0.020 0.634 0.148 0.651 sum 21.912 -14.845 0.254 26.469 Atomic orbital electron populations 1.69913 1.06322 1.26990 1.50856 1.25035 0.94760 0.99264 0.94452 0.86771 0.80371 0.83524 0.78592 1.20243 1.21359 1.18916 1.21085 0.89276 0.94516 1.51235 0.90998 1.19502 0.97325 0.91412 0.96668 1.21715 0.90478 1.01144 1.01839 1.21712 0.96306 0.80827 1.02123 1.46139 1.06426 1.10336 1.74087 1.19991 0.82893 0.89959 0.76615 1.90724 1.55269 1.45848 1.49727 1.22256 0.96781 0.95221 1.00400 0.86269 1.22374 0.98588 0.99777 0.97898 1.20804 0.84893 0.83775 0.79540 1.90622 1.84060 1.29511 1.36062 1.47693 1.09450 1.31471 1.43826 1.21537 0.85004 0.89540 1.06377 1.23768 1.04894 1.00872 0.93215 1.23360 1.03558 0.97362 0.98617 1.22001 0.93260 0.88854 0.96150 0.92664 0.96306 0.96745 0.92021 0.92021 0.91557 0.91602 0.76399 0.86825 0.86964 0.85165 0.85052 0.88446 0.88139 0.88704 0.88739 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.97 5.27 -26.73 -0.14 -2.11 16 11 C 0.11 1.67 5.67 -4.04 -0.02 1.65 16 12 N -0.72 -8.15 5.54 -60.29 -0.33 -8.49 16 13 C 0.52 5.92 7.06 -10.98 -0.08 5.84 16 14 O -0.54 -8.18 15.53 5.55 0.09 -8.10 16 15 C -0.12 -0.97 3.54 -90.14 -0.32 -1.29 16 16 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 17 C -0.15 -1.17 6.40 -26.75 -0.17 -1.34 16 18 C 0.52 5.56 7.88 -10.86 -0.09 5.48 16 19 O -0.53 -7.21 14.68 5.55 0.08 -7.12 16 20 N -0.59 -5.39 3.27 -164.80 -0.54 -5.93 16 21 C 0.08 0.64 6.88 -67.93 -0.47 0.17 16 22 C -0.19 -1.65 9.77 -26.73 -0.26 -1.91 16 23 C -0.19 -1.45 10.34 -26.73 -0.28 -1.73 16 24 C 0.12 0.97 6.69 -3.09 -0.02 0.95 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 27 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.13 1.51 5.29 -51.93 -0.27 1.23 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.90 7.01 -51.93 -0.36 0.54 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -33.66 339.18 -8.27 -41.94 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.40 Total: 0.07 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.39 Total: -7.57 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.10 Total: -40.98 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.17 Total: -15.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.66 -8.27 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.966 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds