Wall clock time and date at job start Tue Mar 31 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00470 * 2 1 4 4 H 1.48499 * 109.47480 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.46966 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.47445 * 149.99983 * 3 2 1 7 7 C 1.37877 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00278 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00189 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47029 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46843 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99643 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00068 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00123 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.85387 * 300.69933 * 15 13 12 17 17 C 1.54620 * 110.97070 * 64.48840 * 15 13 12 18 18 C 1.51275 * 104.19813 * 142.91937 * 17 15 13 19 19 O 1.21285 * 124.94714 * 163.78146 * 18 17 15 20 20 N 1.34424 * 110.11496 * 343.75068 * 18 17 15 21 21 C 1.46501 * 124.35343 * 179.59323 * 20 18 17 22 22 C 1.53001 * 117.49651 * 8.58928 * 21 20 18 23 23 C 1.53002 * 117.49022 * 299.97022 * 21 20 18 24 24 C 1.46825 * 111.31403 * 359.62086 * 20 18 17 25 25 H 0.97009 * 119.99663 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46490 * 60.00314 * 9 7 2 27 27 H 1.08996 * 109.47365 * 300.00456 * 9 7 2 28 28 H 1.09002 * 109.47261 * 60.00204 * 10 9 7 29 29 H 1.08996 * 109.47294 * 299.99894 * 10 9 7 30 30 H 1.08998 * 109.46441 * 60.00212 * 11 10 9 31 31 H 1.08996 * 109.46829 * 299.99975 * 11 10 9 32 32 H 0.96995 * 120.00742 * 0.02562 * 12 11 10 33 33 H 1.09004 * 110.49298 * 261.59768 * 17 15 13 34 34 H 1.09003 * 110.48895 * 24.10563 * 17 15 13 35 35 H 1.08999 * 115.55281 * 154.30293 * 21 20 18 36 36 H 1.09006 * 117.49793 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.50001 * 145.02463 * 22 21 20 38 38 H 1.09010 * 117.49671 * 214.97592 * 23 21 20 39 39 H 1.08992 * 117.50673 * 359.97438 * 23 21 20 40 40 H 1.09002 * 110.23335 * 257.98952 * 24 20 18 41 41 H 1.08994 * 110.28160 * 135.97092 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 6 4.0213 -2.6368 -0.0023 11 6 5.5514 -2.6369 -0.0022 12 7 6.0395 -4.0181 -0.0040 13 6 7.3646 -4.2645 -0.0048 14 8 8.1528 -3.3427 -0.0045 15 6 7.8669 -5.6853 -0.0071 16 1 7.5062 -6.2259 0.8680 17 6 7.4647 -6.4123 -1.3111 18 6 8.6547 -7.2907 -1.6285 19 8 8.6430 -8.2224 -2.4048 20 7 9.7272 -6.8878 -0.9253 21 6 11.0444 -7.5260 -0.9884 22 6 11.2601 -8.5965 -2.0601 23 6 11.1347 -9.0004 -0.5897 24 6 9.4091 -5.7264 -0.0853 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6807 0.8890 27 1 3.8745 -0.6802 -0.8910 28 1 3.6576 -3.1500 -0.8925 29 1 3.6583 -3.1512 0.8875 30 1 5.9146 -2.1238 0.8882 31 1 5.9147 -2.1223 -0.8918 32 1 5.4092 -4.7553 -0.0053 33 1 6.5742 -7.0200 -1.1502 34 1 7.2946 -5.6928 -2.1122 35 1 11.8899 -6.8847 -0.7398 36 1 10.4221 -8.8256 -2.7184 37 1 12.2477 -8.6595 -2.5169 38 1 12.0400 -9.3291 -0.0791 39 1 10.2143 -9.4954 -0.2800 40 1 9.7879 -4.8136 -0.5451 41 1 9.8341 -5.8526 0.9104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:12 Heat of formation + Delta-G solvation = -73.152366 kcal Electronic energy + Delta-G solvation = -21195.759154 eV Core-core repulsion = 17882.231298 eV Total energy + Delta-G solvation = -3313.527856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02042 -40.49217 -37.71258 -37.30037 -36.76702 -35.14970 -33.41762 -32.11804 -29.09840 -28.65588 -25.39986 -23.97293 -23.62284 -23.21600 -22.20573 -20.94093 -20.25038 -18.98205 -18.49002 -17.91757 -17.12206 -17.00029 -16.53640 -16.34487 -15.99029 -15.58157 -15.49131 -14.79414 -14.77014 -14.71052 -14.38444 -14.19956 -13.82811 -13.75607 -13.51453 -12.74635 -12.67895 -12.63486 -12.52498 -12.40643 -11.94139 -11.89329 -11.76152 -11.56698 -11.40080 -11.30807 -11.01676 -10.74949 -10.60311 -10.07453 -9.56674 -8.28077 -6.31814 1.38164 1.38312 1.39757 1.51201 1.55019 1.74337 2.20398 2.37453 2.86549 3.07947 3.13867 3.31591 3.72696 3.74613 3.89878 3.99519 4.09761 4.12368 4.20043 4.25404 4.49114 4.53186 4.54693 4.71058 4.74727 4.77398 4.90546 4.93239 4.96396 5.00684 5.06784 5.25685 5.41058 5.53614 5.59138 5.62689 5.67106 5.99985 6.28994 6.55221 6.76974 7.03475 7.21414 7.33107 8.88285 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046306 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.524833 B =10816.751075 C =11152.861297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.126 3.874 12 N -0.712 5.712 13 C 0.525 3.475 14 O -0.577 6.577 15 C -0.109 4.109 16 H 0.152 0.848 17 C -0.140 4.140 18 C 0.511 3.489 19 O -0.564 6.564 20 N -0.591 5.591 21 C 0.072 3.928 22 C -0.204 4.204 23 C -0.179 4.179 24 C 0.121 3.879 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.417 0.583 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.155 0.845 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.607 -15.860 1.462 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.002 3.998 12 N -0.363 5.363 13 C 0.311 3.689 14 O -0.456 6.456 15 C -0.130 4.130 16 H 0.170 0.830 17 C -0.180 4.180 18 C 0.300 3.700 19 O -0.444 6.444 20 N -0.322 5.322 21 C -0.031 4.031 22 C -0.241 4.241 23 C -0.218 4.218 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.172 0.828 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 24.074 -15.580 1.076 28.696 hybrid contribution -0.708 0.580 -0.168 0.930 sum 23.366 -15.000 0.908 27.781 Atomic orbital electron populations 1.70065 1.08263 1.28077 1.52797 1.26008 0.95595 1.03513 0.94332 0.85692 0.79585 0.78480 0.79104 1.19398 1.21234 1.16869 1.21489 0.92044 0.93176 1.50045 0.94435 1.19478 0.93928 0.94934 0.96804 1.21485 0.92293 0.97919 1.02250 1.21313 0.94173 0.82707 1.01578 1.45952 1.07023 1.09437 1.73890 1.20473 0.82212 0.90978 0.75251 1.90718 1.56142 1.47415 1.51359 1.22202 0.96518 0.92794 1.01505 0.83031 1.22378 0.98396 0.99446 0.97811 1.21249 0.85985 0.83582 0.79161 1.90618 1.84807 1.31254 1.37710 1.47833 1.09610 1.31353 1.43361 1.21873 0.85246 0.90132 1.05878 1.23699 1.04662 1.02206 0.93550 1.23369 1.03888 0.96823 0.97706 1.22053 0.93498 0.87774 0.96847 0.92585 0.96010 0.96288 0.91740 0.91585 0.92083 0.92335 0.74637 0.84731 0.87386 0.82757 0.88078 0.86698 0.85711 0.90240 0.90193 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 7 C -0.53 -29.31 9.66 25.60 0.25 -29.06 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.35 5.27 30.60 0.16 -3.19 16 11 C 0.13 3.47 5.67 86.38 0.49 3.96 16 12 N -0.71 -14.31 5.54 -463.05 -2.57 -16.87 16 13 C 0.52 10.64 7.06 87.66 0.62 11.26 16 14 O -0.58 -16.53 15.53 -3.04 -0.05 -16.58 16 15 C -0.11 -1.37 3.54 -10.48 -0.04 -1.40 16 16 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 17 C -0.14 -1.96 6.40 30.58 0.20 -1.77 16 18 C 0.51 10.41 7.88 87.89 0.69 11.10 16 19 O -0.56 -15.63 14.68 -3.05 -0.04 -15.67 16 20 N -0.59 -9.77 3.27 -793.89 -2.60 -12.36 16 21 C 0.07 1.03 6.88 44.99 0.31 1.34 16 22 C -0.20 -3.40 9.77 30.60 0.30 -3.10 16 23 C -0.18 -2.44 10.34 30.60 0.32 -2.12 16 24 C 0.12 1.65 6.69 86.82 0.58 2.23 16 25 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 26 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.42 6.00 8.47 -92.71 -0.79 5.21 16 33 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.11 1.65 7.89 -2.39 -0.02 1.63 16 35 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 2.40 5.29 -2.38 -0.01 2.39 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.39 7.01 -2.39 -0.02 1.37 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.80 339.18 1.57 -73.23 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.19 Total: 11.99 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.46 Total: -10.63 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.87 Total: -87.73 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.09 Total: -32.25 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -74.80 1.57 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.075 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds