Wall clock time and date at job start Tue Mar 31 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48506 * 109.46762 * 239.99701 * 3 2 1 5 5 H 1.48498 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47311 * 119.99987 * 3 2 1 7 7 C 1.37875 * 119.99311 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99263 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47458 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00206 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99846 * 354.94359 * 13 12 11 15 15 C 1.50699 * 120.00027 * 174.93709 * 13 12 11 16 16 C 1.50704 * 115.54688 * 40.05870 * 15 13 12 17 17 O 1.21282 * 119.99673 * 245.48638 * 16 15 13 18 18 N 1.34773 * 120.00320 * 65.48834 * 16 15 13 19 19 C 1.46500 * 120.00122 * 174.87648 * 18 16 15 20 20 C 1.52993 * 117.50078 * 223.74990 * 19 18 16 21 21 C 1.52998 * 117.50166 * 155.08527 * 19 18 16 22 22 C 1.53001 * 117.50061 * 254.34951 * 15 13 12 23 23 C 1.52999 * 117.50105 * 185.72174 * 15 13 12 24 24 H 0.97010 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47590 * 59.99430 * 9 7 2 26 26 H 1.09004 * 109.46901 * 299.99409 * 9 7 2 27 27 H 1.08992 * 109.47461 * 59.99750 * 10 9 7 28 28 H 1.09004 * 109.46776 * 299.99588 * 10 9 7 29 29 H 1.08999 * 109.47074 * 300.00102 * 11 10 9 30 30 H 1.09005 * 109.47220 * 59.99596 * 11 10 9 31 31 H 0.97003 * 119.99963 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00090 * 354.87560 * 18 16 15 33 33 H 1.09009 * 115.54730 * 9.41899 * 19 18 16 34 34 H 1.09003 * 117.50109 * 359.97438 * 20 19 18 35 35 H 1.08994 * 117.50193 * 145.01915 * 20 19 18 36 36 H 1.08998 * 117.50142 * 214.98136 * 21 19 18 37 37 H 1.09003 * 117.49248 * 0.02562 * 21 19 18 38 38 H 1.08996 * 117.49931 * 359.97438 * 22 15 13 39 39 H 1.08994 * 117.49895 * 145.02312 * 22 15 13 40 40 H 1.08992 * 117.49950 * 214.98135 * 23 15 13 41 41 H 1.09010 * 117.49400 * 359.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1007 0.0006 13 6 1.9826 -7.3714 0.0015 14 8 0.7942 -7.5942 0.0954 15 6 2.9569 -8.5152 -0.1143 16 6 4.2399 -8.3570 0.6603 17 8 5.2958 -8.2606 0.0715 18 7 4.2140 -8.3228 2.0074 19 6 5.4682 -8.2822 2.7634 20 6 5.5826 -9.1875 3.9914 21 6 5.4278 -7.6748 4.1670 22 6 3.0260 -9.2516 -1.4537 23 6 2.3784 -9.9258 -0.2424 24 1 -0.4850 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8718 -3.6044 0.8904 28 1 2.8717 -3.6044 -0.8895 29 1 0.8537 -5.0446 0.8914 30 1 0.8530 -5.0451 -0.8886 31 1 3.3857 -5.9235 0.0002 32 1 3.3650 -8.3250 2.4763 33 1 6.3691 -8.1212 2.1711 34 1 4.7244 -9.8131 4.2371 35 1 6.5586 -9.6219 4.2074 36 1 6.3021 -7.1146 4.4984 37 1 4.4678 -7.3058 4.5281 38 1 2.3664 -8.9090 -2.2509 39 1 3.9995 -9.6217 -1.7749 40 1 2.9260 -10.7394 0.2332 41 1 1.2930 -10.0265 -0.2424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:36 Heat of formation + Delta-G solvation = -38.014513 kcal Electronic energy + Delta-G solvation = -21450.058807 eV Core-core repulsion = 18138.054643 eV Total energy + Delta-G solvation = -3312.004164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90404 -39.24604 -37.53580 -36.28519 -35.28397 -33.37435 -33.05599 -31.25495 -27.34862 -25.53388 -23.49249 -22.75409 -22.73557 -22.14551 -21.35434 -20.69135 -19.67897 -18.24355 -16.93413 -16.58971 -16.15681 -15.71538 -15.42459 -14.95728 -14.87283 -14.58472 -14.44127 -14.18254 -13.76398 -13.27983 -13.01746 -12.30220 -11.97530 -11.94561 -11.86959 -11.80496 -11.75810 -11.36269 -10.99766 -10.89676 -10.77980 -10.76302 -10.63986 -10.34796 -9.89849 -9.87312 -9.42044 -9.15627 -9.11992 -8.89655 -8.38284 -6.03165 -4.06319 2.09798 2.37555 2.58696 3.07799 3.31691 3.36303 3.38643 3.51017 3.63432 4.24384 4.40199 4.42872 4.44718 4.52516 4.57476 4.60098 4.65297 5.26040 5.27448 5.32631 5.35873 5.42951 5.54243 5.58619 5.66163 5.71100 5.71357 5.82064 6.10202 6.11960 6.36539 6.54951 6.76339 6.95899 7.07053 7.54427 7.60962 7.73147 7.80766 7.95145 8.18363 8.36667 8.99965 9.57970 11.08087 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.003516 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.339613 B = 7960.707686 C = 8980.020598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.550 3.450 14 O -0.533 6.533 15 C -0.203 4.203 16 C 0.560 3.440 17 O -0.525 6.525 18 N -0.695 5.695 19 C 0.077 3.923 20 C -0.193 4.193 21 C -0.187 4.187 22 C -0.118 4.118 23 C -0.128 4.128 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.406 0.594 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 -21.384 4.782 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.366 5.366 13 C 0.334 3.666 14 O -0.410 6.410 15 C -0.209 4.209 16 C 0.345 3.655 17 O -0.400 6.400 18 N -0.344 5.344 19 C -0.029 4.029 20 C -0.231 4.231 21 C -0.225 4.225 22 C -0.156 4.156 23 C -0.165 4.165 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.240 0.760 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.829 -21.324 4.390 23.494 hybrid contribution 0.490 1.181 0.388 1.336 sum 9.319 -20.143 4.778 22.703 Atomic orbital electron populations 1.69960 1.06061 1.26821 1.50476 1.25023 0.94863 0.99300 0.95218 0.86635 0.79562 0.83033 0.78633 1.20210 1.21246 1.20232 1.21165 0.92987 0.90933 1.51096 0.92683 1.19017 0.93780 0.90791 0.97648 1.21905 0.99805 0.93214 1.01036 1.21726 0.91739 0.84953 1.02183 1.46195 1.11148 1.05606 1.73681 1.18980 0.87827 0.82926 0.76903 1.90720 1.16137 1.84417 1.49734 1.21561 0.96948 0.96614 1.05811 1.19208 0.88864 0.75608 0.81838 1.90725 1.31611 1.48526 1.69135 1.45328 1.08773 1.74431 1.05919 1.21654 0.89248 1.04485 0.87490 1.23452 1.03851 0.93621 1.02207 1.23411 1.04329 0.95943 0.98798 1.23049 1.03684 0.99171 0.89701 1.23106 1.02568 0.90271 1.00562 0.92858 0.96248 0.96267 0.92718 0.92606 0.91453 0.91523 0.76591 0.75951 0.84257 0.88442 0.87893 0.87597 0.88162 0.87105 0.86774 0.87588 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.67 9.11 -34.45 -0.31 -14.98 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.12 2.04 5.68 -4.04 -0.02 2.01 16 12 N -0.72 -10.67 5.49 -60.29 -0.33 -11.00 16 13 C 0.55 7.99 7.33 -10.99 -0.08 7.91 16 14 O -0.53 -9.32 16.28 5.56 0.09 -9.23 16 15 C -0.20 -2.33 2.39 -156.81 -0.37 -2.70 16 16 C 0.56 6.60 6.37 -10.98 -0.07 6.53 16 17 O -0.52 -7.64 16.27 5.56 0.09 -7.55 16 18 N -0.69 -6.70 5.56 -53.81 -0.30 -6.99 16 19 C 0.08 0.67 6.44 -67.93 -0.44 0.23 16 20 C -0.19 -1.27 10.46 -26.70 -0.28 -1.55 16 21 C -0.19 -1.35 10.46 -26.69 -0.28 -1.63 16 22 C -0.12 -1.16 9.76 -26.73 -0.26 -1.42 16 23 C -0.13 -1.15 9.75 -26.73 -0.26 -1.41 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 5.55 7.87 -40.82 -0.32 5.23 16 32 H 0.41 3.46 8.83 -40.82 -0.36 3.09 16 33 H 0.14 1.36 7.39 -51.92 -0.38 0.97 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.11 1.05 8.00 -51.93 -0.42 0.63 16 40 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.12 1.13 7.68 -51.92 -0.40 0.73 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -32.80 354.71 -8.64 -41.44 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.49 Total: 5.02 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.76 Total: -7.50 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.11 Total: -44.04 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.18 Total: -16.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.80 -8.64 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.425 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds