Wall clock time and date at job start Tue Mar 31 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48506 * 109.46762 * 239.99701 * 3 2 1 5 5 H 1.48498 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47311 * 119.99987 * 3 2 1 7 7 C 1.37875 * 119.99311 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99263 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47458 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00206 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99846 * 354.94359 * 13 12 11 15 15 C 1.50699 * 120.00027 * 174.93709 * 13 12 11 16 16 C 1.50704 * 115.54688 * 40.05870 * 15 13 12 17 17 O 1.21282 * 119.99673 * 245.48638 * 16 15 13 18 18 N 1.34773 * 120.00320 * 65.48834 * 16 15 13 19 19 C 1.46500 * 120.00122 * 174.87648 * 18 16 15 20 20 C 1.52993 * 117.50078 * 223.74990 * 19 18 16 21 21 C 1.52998 * 117.50166 * 155.08527 * 19 18 16 22 22 C 1.53001 * 117.50061 * 254.34951 * 15 13 12 23 23 C 1.52999 * 117.50105 * 185.72174 * 15 13 12 24 24 H 0.97010 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47590 * 59.99430 * 9 7 2 26 26 H 1.09004 * 109.46901 * 299.99409 * 9 7 2 27 27 H 1.08992 * 109.47461 * 59.99750 * 10 9 7 28 28 H 1.09004 * 109.46776 * 299.99588 * 10 9 7 29 29 H 1.08999 * 109.47074 * 300.00102 * 11 10 9 30 30 H 1.09005 * 109.47220 * 59.99596 * 11 10 9 31 31 H 0.97003 * 119.99963 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00090 * 354.87560 * 18 16 15 33 33 H 1.09009 * 115.54730 * 9.41899 * 19 18 16 34 34 H 1.09003 * 117.50109 * 359.97438 * 20 19 18 35 35 H 1.08994 * 117.50193 * 145.01915 * 20 19 18 36 36 H 1.08998 * 117.50142 * 214.98136 * 21 19 18 37 37 H 1.09003 * 117.49248 * 0.02562 * 21 19 18 38 38 H 1.08996 * 117.49931 * 359.97438 * 22 15 13 39 39 H 1.08994 * 117.49895 * 145.02312 * 22 15 13 40 40 H 1.08992 * 117.49950 * 214.98135 * 23 15 13 41 41 H 1.09010 * 117.49400 * 359.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1007 0.0006 13 6 1.9826 -7.3714 0.0015 14 8 0.7942 -7.5942 0.0954 15 6 2.9569 -8.5152 -0.1143 16 6 4.2399 -8.3570 0.6603 17 8 5.2958 -8.2606 0.0715 18 7 4.2140 -8.3228 2.0074 19 6 5.4682 -8.2822 2.7634 20 6 5.5826 -9.1875 3.9914 21 6 5.4278 -7.6748 4.1670 22 6 3.0260 -9.2516 -1.4537 23 6 2.3784 -9.9258 -0.2424 24 1 -0.4850 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8718 -3.6044 0.8904 28 1 2.8717 -3.6044 -0.8895 29 1 0.8537 -5.0446 0.8914 30 1 0.8530 -5.0451 -0.8886 31 1 3.3857 -5.9235 0.0002 32 1 3.3650 -8.3250 2.4763 33 1 6.3691 -8.1212 2.1711 34 1 4.7244 -9.8131 4.2371 35 1 6.5586 -9.6219 4.2074 36 1 6.3021 -7.1146 4.4984 37 1 4.4678 -7.3058 4.5281 38 1 2.3664 -8.9090 -2.2509 39 1 3.9995 -9.6217 -1.7749 40 1 2.9260 -10.7394 0.2332 41 1 1.2930 -10.0265 -0.2424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609143647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:35 Heat of formation + Delta-G solvation = -60.365879 kcal Electronic energy + Delta-G solvation = -21451.028035 eV Core-core repulsion = 18138.054643 eV Total energy + Delta-G solvation = -3312.973392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88851 -40.30312 -38.28516 -37.40167 -36.60919 -35.24684 -33.86359 -33.06865 -29.02400 -26.76829 -25.00209 -23.53813 -23.30777 -23.26276 -22.38591 -22.16049 -20.76420 -19.31926 -18.55270 -17.70137 -17.25725 -17.01819 -16.69228 -16.46342 -15.98568 -15.59328 -15.56269 -15.16581 -15.15442 -14.36845 -14.13791 -13.80798 -13.72785 -13.56053 -12.74602 -12.68215 -12.58798 -12.56510 -12.45221 -12.39974 -12.23331 -11.81736 -11.72740 -11.64036 -11.43806 -11.31598 -11.15805 -10.84825 -10.56242 -10.23908 -9.85193 -8.21066 -6.32565 1.19712 1.25970 1.40708 1.43500 1.51477 1.81044 1.93068 2.41080 2.70400 2.95169 3.12611 3.43499 3.51959 3.59153 3.75822 3.77090 4.02249 4.05547 4.08322 4.14977 4.49308 4.53595 4.63060 4.74579 4.76522 4.82996 4.88424 4.90208 5.01656 5.09618 5.11103 5.19833 5.29778 5.39040 5.48543 5.67221 5.81653 6.20061 6.26135 6.34738 6.83918 6.93488 7.01696 7.36959 8.90721 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.003516 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.339613 B = 7960.707686 C = 8980.020598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.130 3.870 12 N -0.712 5.712 13 C 0.553 3.447 14 O -0.564 6.564 15 C -0.215 4.215 16 C 0.562 3.438 17 O -0.556 6.556 18 N -0.685 5.685 19 C 0.052 3.948 20 C -0.174 4.174 21 C -0.183 4.183 22 C -0.115 4.115 23 C -0.107 4.107 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.004 1.004 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -22.214 5.432 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.007 3.993 12 N -0.362 5.362 13 C 0.339 3.661 14 O -0.443 6.443 15 C -0.221 4.221 16 C 0.348 3.652 17 O -0.434 6.434 18 N -0.334 5.334 19 C -0.053 4.053 20 C -0.212 4.212 21 C -0.221 4.221 22 C -0.152 4.152 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.247 0.753 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.436 -22.174 5.069 25.026 hybrid contribution -0.032 1.401 0.212 1.417 sum 10.403 -20.773 5.281 23.825 Atomic orbital electron populations 1.70099 1.07844 1.27907 1.51470 1.25988 0.95754 1.03423 0.94670 0.85491 0.78244 0.78033 0.79224 1.19183 1.20937 1.19061 1.21635 0.93641 0.92153 1.50828 0.91884 1.18911 0.94285 0.92621 0.95289 1.21611 0.98546 0.92213 1.01794 1.21331 0.91657 0.84946 1.01384 1.46025 1.10991 1.05311 1.73851 1.19389 0.87906 0.83165 0.75597 1.90707 1.17703 1.84861 1.51030 1.21440 0.96469 0.96541 1.07649 1.19183 0.88348 0.75347 0.82336 1.90711 1.32572 1.50333 1.69808 1.45301 1.09508 1.73216 1.05387 1.21736 0.88386 1.07176 0.87994 1.23517 1.04913 0.93283 0.99478 1.23471 1.04702 0.96779 0.97175 1.23164 1.04279 0.98457 0.89327 1.23228 1.02627 0.89129 0.99456 0.92728 0.98726 0.98600 0.91758 0.91881 0.92254 0.92498 0.75760 0.75273 0.85574 0.87598 0.86609 0.86863 0.88152 0.87055 0.85907 0.85210 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.39 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.10 5.27 30.60 0.16 -3.94 16 11 C 0.13 4.59 5.68 86.38 0.49 5.08 16 12 N -0.71 -20.85 5.49 -463.06 -2.54 -23.39 16 13 C 0.55 15.75 7.33 87.66 0.64 16.40 16 14 O -0.56 -19.58 16.28 -3.03 -0.05 -19.63 16 15 C -0.21 -4.65 2.39 -53.67 -0.13 -4.78 16 16 C 0.56 12.63 6.37 87.66 0.56 13.19 16 17 O -0.56 -15.77 16.27 -3.04 -0.05 -15.82 16 18 N -0.69 -12.33 5.56 -442.54 -2.46 -14.79 16 19 C 0.05 0.85 6.44 44.99 0.29 1.14 16 20 C -0.17 -1.89 10.46 30.62 0.32 -1.57 16 21 C -0.18 -2.32 10.46 30.62 0.32 -2.00 16 22 C -0.11 -2.06 9.76 30.60 0.30 -1.76 16 23 C -0.11 -1.71 9.75 30.60 0.30 -1.42 16 24 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.41 10.95 7.87 -92.71 -0.73 10.23 16 32 H 0.41 6.41 8.83 -92.71 -0.82 5.60 16 33 H 0.13 2.40 7.39 -2.38 -0.02 2.38 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.12 2.03 8.00 -2.39 -0.02 2.01 16 40 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.12 2.00 7.68 -2.38 -0.02 1.98 16 Total: -1.00 -70.65 354.71 0.80 -69.85 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.51 Total: 22.45 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.10 Total: -8.11 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.72 Total: -94.72 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.10 Total: -35.45 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.65 0.80 -69.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds