Wall clock time and date at job start Tue Mar 31 2020 02:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86801 * 120.00134 * 2 1 4 4 H 1.48497 * 109.47433 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99853 * 3 2 1 6 6 H 1.48499 * 109.46766 * 59.99364 * 3 2 1 7 7 C 1.40054 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99589 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00286 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99607 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99500 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.64189 * 34.30160 * 12 11 9 14 14 C 1.55153 * 110.72047 * 271.15898 * 12 11 9 15 15 C 1.54915 * 101.58175 * 205.95920 * 14 12 11 16 16 N 1.47428 * 104.83102 * 37.00975 * 15 14 12 17 17 C 1.34778 * 125.64860 * 155.91040 * 16 15 14 18 18 O 1.21278 * 119.99825 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99622 * 359.97438 * 17 16 15 20 20 C 1.54267 * 110.03226 * 297.16238 * 19 17 16 21 21 C 1.54891 * 104.19297 * 217.11113 * 20 19 17 22 22 C 1.54886 * 102.75164 * 37.94169 * 21 20 19 23 23 C 1.53876 * 110.02860 * 179.97438 * 19 17 16 24 24 C 1.47486 * 108.75727 * 335.89255 * 16 15 14 25 25 H 0.96998 * 120.00635 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00112 * 0.02562 * 11 9 7 27 27 H 1.09003 * 111.00505 * 324.03403 * 14 12 11 28 28 H 1.09001 * 111.00757 * 87.88486 * 14 12 11 29 29 H 1.09000 * 110.36497 * 155.84404 * 15 14 12 30 30 H 1.08998 * 110.36590 * 278.17045 * 15 14 12 31 31 H 1.08997 * 110.02165 * 58.60797 * 19 17 16 32 32 H 1.09000 * 110.48565 * 335.78440 * 20 19 17 33 33 H 1.08998 * 110.48380 * 98.43245 * 20 19 17 34 34 H 1.09004 * 110.75530 * 279.62705 * 21 20 19 35 35 H 1.09002 * 110.75452 * 156.25883 * 21 20 19 36 36 H 1.09003 * 110.48413 * 203.37746 * 22 21 20 37 37 H 1.08996 * 110.48651 * 80.74009 * 22 21 20 38 38 H 1.08999 * 110.03165 * 238.56756 * 23 19 17 39 39 H 1.09006 * 110.03465 * 359.97438 * 23 19 17 40 40 H 1.09000 * 110.02886 * 241.65974 * 24 16 15 41 41 H 1.09005 * 109.96368 * 120.34831 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8818 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4806 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0000 13 1 0.2949 -4.8278 -0.5752 14 6 0.9161 -5.3775 1.4506 15 6 0.8016 -6.9120 1.2718 16 7 1.8225 -7.2518 0.2640 17 6 2.4074 -8.4566 0.1137 18 8 3.2384 -8.6233 -0.7539 19 6 2.0290 -9.5967 1.0237 20 6 2.3981 -9.2539 2.4818 21 6 2.8833 -10.5990 3.0770 22 6 3.6590 -11.2351 1.8968 23 6 2.8303 -10.8565 0.6514 24 6 2.0982 -6.0556 -0.5536 25 1 -0.4851 0.8400 -0.0004 26 1 2.9191 -3.6476 0.0009 27 1 1.7379 -5.1224 2.1198 28 1 -0.0227 -4.9547 1.8085 29 1 1.0133 -7.4203 2.2125 30 1 -0.1916 -7.1787 0.9107 31 1 0.9605 -9.7976 0.9456 32 1 3.1981 -8.5141 2.5089 33 1 1.5233 -8.8913 3.0215 34 1 2.0364 -11.2226 3.3633 35 1 3.5443 -10.4293 3.9269 36 1 3.7045 -12.3183 2.0098 37 1 4.6626 -10.8152 1.8296 38 1 2.1506 -11.6687 0.3938 39 1 3.4926 -10.6434 -0.1878 40 1 1.8433 -6.2488 -1.5957 41 1 3.1505 -5.7833 -0.4716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613083459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:39 Heat of formation + Delta-G solvation = -86.080939 kcal Electronic energy + Delta-G solvation = -22025.744121 eV Core-core repulsion = 18711.655640 eV Total energy + Delta-G solvation = -3314.088481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40548 -38.34782 -37.07391 -36.38849 -33.20417 -32.31408 -30.39798 -29.62395 -28.92987 -27.91525 -26.02414 -23.60631 -21.41139 -21.06781 -20.67814 -19.60975 -18.81556 -17.57004 -17.22866 -16.13299 -15.79702 -15.54612 -15.28878 -14.63265 -14.22430 -14.10682 -13.72403 -13.57399 -13.20879 -12.66872 -12.64503 -12.47988 -12.10911 -11.79812 -11.68463 -11.48917 -11.31439 -11.28108 -11.13959 -11.03425 -10.99747 -10.87343 -10.70792 -10.50748 -10.42539 -10.22176 -9.70534 -8.90597 -8.59233 -7.69680 -7.61483 -6.23889 -4.69335 2.65281 2.96598 3.10586 3.19370 3.23723 4.07184 4.23788 4.34963 4.45012 4.52162 4.68623 4.75460 4.92105 5.06798 5.14055 5.21876 5.27986 5.33901 5.35500 5.43537 5.51506 5.58072 5.59732 5.67800 5.71042 5.81132 5.87617 5.93684 5.98658 6.07906 6.11078 6.16538 6.34074 6.42377 6.59146 7.39368 7.56656 7.84224 8.00945 8.19057 8.27490 8.98050 9.44536 10.53867 10.71912 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040080 B = 0.003181 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.437754 B = 8798.777734 C = 8859.984731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.757 5.757 12 C 0.149 3.851 13 H 0.092 0.908 14 C -0.143 4.143 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.532 3.468 18 O -0.545 6.545 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.119 4.119 24 C 0.102 3.898 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -18.264 5.882 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.412 5.412 12 C 0.041 3.959 13 H 0.110 0.890 14 C -0.183 4.183 15 C -0.031 4.031 16 N -0.347 5.347 17 C 0.320 3.680 18 O -0.422 6.422 19 C -0.130 4.130 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.021 4.021 25 H 0.079 0.921 26 H 0.214 0.786 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.202 -18.293 5.383 19.336 hybrid contribution 0.781 0.887 0.017 1.182 sum 3.984 -17.406 5.400 18.655 Atomic orbital electron populations 1.70018 1.07051 1.27242 1.35250 1.25707 0.94628 1.00330 0.92571 0.86313 0.80515 0.81693 0.78227 1.18760 1.20143 1.20163 1.20915 0.93666 0.89295 1.54223 0.91339 1.18237 0.87229 0.82292 0.76213 1.90600 1.14008 1.86687 1.54872 1.46162 1.08483 1.04179 1.82369 1.21448 0.95736 0.84138 0.94557 0.88970 1.23253 1.03539 0.92346 0.99165 1.22584 0.91451 0.97122 0.91893 1.48555 1.41232 1.10141 1.34800 1.20261 0.80666 0.82500 0.84551 1.90658 1.33591 1.82454 1.35540 1.21901 1.01966 0.94020 0.95118 1.22436 1.01585 0.98258 0.93113 1.22512 0.99873 0.95951 0.97793 1.22371 0.99164 1.00267 0.94348 1.22178 0.98978 0.95025 0.99520 1.22297 1.00320 0.84491 0.94999 0.92117 0.78602 0.90651 0.89407 0.90178 0.91229 0.88541 0.91026 0.90553 0.91249 0.91318 0.91586 0.91532 0.91522 0.89211 0.91122 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.53 11.83 55.55 0.66 -21.87 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.83 29.56 -169.99 -5.02 14.80 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -15.00 9.54 -35.63 -0.34 -15.34 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.20 7.75 -12.99 -0.10 15.10 16 10 O -0.58 -17.97 14.70 5.20 0.08 -17.89 16 11 N -0.76 -16.14 5.19 -53.43 -0.28 -16.41 16 12 C 0.15 2.69 3.26 -66.10 -0.22 2.47 16 13 H 0.09 1.87 7.62 -51.93 -0.40 1.47 16 14 C -0.14 -2.20 6.77 -24.58 -0.17 -2.36 16 15 C 0.09 1.11 6.61 -2.52 -0.02 1.09 16 16 N -0.61 -8.57 3.34 -170.14 -0.57 -9.14 16 17 C 0.53 7.56 7.05 -10.98 -0.08 7.48 16 18 O -0.54 -9.65 15.54 5.56 0.09 -9.56 16 19 C -0.11 -1.12 2.77 -90.65 -0.25 -1.37 16 20 C -0.12 -1.02 5.04 -25.07 -0.13 -1.15 16 21 C -0.12 -0.92 6.91 -24.74 -0.17 -1.10 16 22 C -0.12 -1.03 6.83 -25.05 -0.17 -1.20 16 23 C -0.12 -1.18 6.40 -25.59 -0.16 -1.34 16 24 C 0.10 1.61 6.65 -2.81 -0.02 1.59 16 25 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 26 H 0.38 7.29 8.32 -40.82 -0.34 6.95 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.08 0.77 4.97 -51.93 -0.26 0.52 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 33 H 0.08 0.57 6.58 -51.93 -0.34 0.23 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.11 6.39 -51.93 -0.33 0.78 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -34.13 329.54 -8.25 -42.37 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.25 Total: 6.57 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.91 Total: 6.16 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.19 Total: -47.42 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: 0.16 Total: -27.45 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.13 -8.25 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.706 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds