Wall clock time and date at job start Tue Mar 31 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86801 * 120.00134 * 2 1 4 4 H 1.48497 * 109.47433 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99853 * 3 2 1 6 6 H 1.48499 * 109.46766 * 59.99364 * 3 2 1 7 7 C 1.40054 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99589 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00286 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99607 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99500 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.64189 * 34.30160 * 12 11 9 14 14 C 1.55153 * 110.72047 * 271.15898 * 12 11 9 15 15 C 1.54915 * 101.58175 * 205.95920 * 14 12 11 16 16 N 1.47428 * 104.83102 * 37.00975 * 15 14 12 17 17 C 1.34778 * 125.64860 * 155.91040 * 16 15 14 18 18 O 1.21278 * 119.99825 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99622 * 359.97438 * 17 16 15 20 20 C 1.54267 * 110.03226 * 297.16238 * 19 17 16 21 21 C 1.54891 * 104.19297 * 217.11113 * 20 19 17 22 22 C 1.54886 * 102.75164 * 37.94169 * 21 20 19 23 23 C 1.53876 * 110.02860 * 179.97438 * 19 17 16 24 24 C 1.47486 * 108.75727 * 335.89255 * 16 15 14 25 25 H 0.96998 * 120.00635 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00112 * 0.02562 * 11 9 7 27 27 H 1.09003 * 111.00505 * 324.03403 * 14 12 11 28 28 H 1.09001 * 111.00757 * 87.88486 * 14 12 11 29 29 H 1.09000 * 110.36497 * 155.84404 * 15 14 12 30 30 H 1.08998 * 110.36590 * 278.17045 * 15 14 12 31 31 H 1.08997 * 110.02165 * 58.60797 * 19 17 16 32 32 H 1.09000 * 110.48565 * 335.78440 * 20 19 17 33 33 H 1.08998 * 110.48380 * 98.43245 * 20 19 17 34 34 H 1.09004 * 110.75530 * 279.62705 * 21 20 19 35 35 H 1.09002 * 110.75452 * 156.25883 * 21 20 19 36 36 H 1.09003 * 110.48413 * 203.37746 * 22 21 20 37 37 H 1.08996 * 110.48651 * 80.74009 * 22 21 20 38 38 H 1.08999 * 110.03165 * 238.56756 * 23 19 17 39 39 H 1.09006 * 110.03465 * 359.97438 * 23 19 17 40 40 H 1.09000 * 110.02886 * 241.65974 * 24 16 15 41 41 H 1.09005 * 109.96368 * 120.34831 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8818 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4806 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0000 13 1 0.2949 -4.8278 -0.5752 14 6 0.9161 -5.3775 1.4506 15 6 0.8016 -6.9120 1.2718 16 7 1.8225 -7.2518 0.2640 17 6 2.4074 -8.4566 0.1137 18 8 3.2384 -8.6233 -0.7539 19 6 2.0290 -9.5967 1.0237 20 6 2.3981 -9.2539 2.4818 21 6 2.8833 -10.5990 3.0770 22 6 3.6590 -11.2351 1.8968 23 6 2.8303 -10.8565 0.6514 24 6 2.0982 -6.0556 -0.5536 25 1 -0.4851 0.8400 -0.0004 26 1 2.9191 -3.6476 0.0009 27 1 1.7379 -5.1224 2.1198 28 1 -0.0227 -4.9547 1.8085 29 1 1.0133 -7.4203 2.2125 30 1 -0.1916 -7.1787 0.9107 31 1 0.9605 -9.7976 0.9456 32 1 3.1981 -8.5141 2.5089 33 1 1.5233 -8.8913 3.0215 34 1 2.0364 -11.2226 3.3633 35 1 3.5443 -10.4293 3.9269 36 1 3.7045 -12.3183 2.0098 37 1 4.6626 -10.8152 1.8296 38 1 2.1506 -11.6687 0.3938 39 1 3.4926 -10.6434 -0.1878 40 1 1.8433 -6.2488 -1.5957 41 1 3.1505 -5.7833 -0.4716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613083459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:38 Heat of formation + Delta-G solvation = -109.965840 kcal Electronic energy + Delta-G solvation = -22026.779848 eV Core-core repulsion = 18711.655640 eV Total energy + Delta-G solvation = -3315.124208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52070 -39.82642 -38.39487 -37.73801 -34.98953 -34.32728 -31.77850 -30.63066 -29.66685 -29.24631 -27.89640 -24.81043 -22.81822 -22.01180 -21.56818 -21.35722 -19.83698 -19.29073 -18.45042 -17.69116 -17.13862 -16.74357 -16.45841 -16.07859 -15.87437 -15.07899 -14.95142 -14.87689 -14.48028 -14.26123 -14.13563 -13.73921 -13.46295 -13.22821 -12.90164 -12.71800 -12.66162 -12.63076 -12.40876 -12.23629 -12.04608 -12.00722 -11.97561 -11.72559 -11.58049 -11.40169 -10.94513 -10.83882 -9.88514 -9.76808 -9.49314 -8.29908 -6.85842 1.40125 1.41062 1.55046 1.58204 1.81878 2.25219 2.46277 3.07368 3.30199 3.54180 3.56666 3.65074 3.74692 3.87816 4.09658 4.16350 4.21919 4.30487 4.45560 4.48612 4.56781 4.58413 4.67094 4.70415 4.80889 4.84534 4.98972 5.02604 5.10407 5.11750 5.18372 5.24407 5.26692 5.32546 5.44122 5.48620 5.86918 6.18410 6.26210 6.45468 6.87132 7.06279 7.50433 8.48026 8.66491 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040080 B = 0.003181 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.437754 B = 8798.777734 C = 8859.984731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.544 3.456 10 O -0.626 6.626 11 N -0.746 5.746 12 C 0.144 3.856 13 H 0.065 0.935 14 C -0.137 4.137 15 C 0.103 3.897 16 N -0.613 5.613 17 C 0.527 3.473 18 O -0.586 6.586 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.121 4.121 24 C 0.113 3.887 25 H 0.275 0.725 26 H 0.394 0.606 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 -19.226 7.465 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.610 4.610 8 H 0.103 0.897 9 C 0.348 3.652 10 O -0.512 6.512 11 N -0.400 5.400 12 C 0.037 3.963 13 H 0.083 0.917 14 C -0.177 4.177 15 C -0.019 4.019 16 N -0.346 5.346 17 C 0.318 3.682 18 O -0.467 6.467 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.011 4.011 25 H 0.085 0.915 26 H 0.228 0.772 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.908 -19.309 6.985 20.902 hybrid contribution 0.583 1.112 -0.518 1.358 sum 4.492 -18.197 6.467 19.828 Atomic orbital electron populations 1.70169 1.09371 1.28892 1.36409 1.26913 0.95521 1.04791 0.91256 0.84996 0.79295 0.75635 0.78523 1.17253 1.19483 1.19257 1.21444 0.94687 0.90149 1.54681 0.89695 1.18507 0.86839 0.83986 0.75863 1.90556 1.15912 1.87759 1.57005 1.45803 1.09039 1.04153 1.81042 1.21509 0.94751 0.83411 0.96610 0.91659 1.23129 1.02840 0.94912 0.96797 1.22656 0.91742 0.94506 0.92955 1.48622 1.41625 1.09625 1.34766 1.21067 0.79724 0.83006 0.84424 1.90645 1.35443 1.83128 1.37476 1.22017 1.03289 0.92171 0.95011 1.22473 1.01956 0.98823 0.92124 1.22509 1.00452 0.95123 0.97351 1.22378 0.98331 1.01352 0.94080 1.22192 0.99010 0.95470 0.99225 1.22002 0.99510 0.84671 0.94940 0.91541 0.77230 0.90483 0.90715 0.86819 0.89562 0.86187 0.92683 0.88446 0.89396 0.90553 0.89966 0.92922 0.89788 0.92265 0.91764 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.26 11.83 21.84 0.26 -49.00 16 2 C 0.03 1.68 5.50 85.31 0.47 2.15 16 3 Si 1.00 40.53 29.56 68.60 2.03 42.56 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.57 -31.96 9.54 24.83 0.24 -31.72 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 9 C 0.54 30.62 7.75 86.36 0.67 31.29 16 10 O -0.63 -40.45 14.70 -4.32 -0.06 -40.51 16 11 N -0.75 -32.54 5.19 -441.18 -2.29 -34.83 16 12 C 0.14 5.31 3.26 46.18 0.15 5.46 16 13 H 0.07 2.78 7.62 -2.39 -0.02 2.76 16 14 C -0.14 -4.14 6.77 31.99 0.22 -3.92 16 15 C 0.10 2.24 6.61 86.86 0.57 2.82 16 16 N -0.61 -16.44 3.34 -810.59 -2.70 -19.14 16 17 C 0.53 14.44 7.05 87.66 0.62 15.06 16 18 O -0.59 -20.97 15.54 -3.02 -0.05 -21.02 16 19 C -0.10 -1.88 2.77 -10.81 -0.03 -1.91 16 20 C -0.12 -1.67 5.04 31.67 0.16 -1.51 16 21 C -0.12 -1.34 6.91 31.88 0.22 -1.12 16 22 C -0.12 -1.79 6.83 31.68 0.22 -1.57 16 23 C -0.12 -2.19 6.40 31.34 0.20 -1.99 16 24 C 0.11 3.57 6.65 86.64 0.58 4.15 16 25 H 0.27 14.92 8.29 -92.71 -0.77 14.16 16 26 H 0.39 15.18 8.32 -92.71 -0.77 14.41 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 29 H 0.11 1.76 4.97 -2.39 -0.01 1.75 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 0.99 7.85 -2.39 -0.02 0.98 16 33 H 0.10 1.00 6.58 -2.39 -0.02 0.98 16 34 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.46 6.39 -2.38 -0.02 1.45 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.21 7.70 -2.38 -0.02 2.19 16 Total: -1.00 -77.42 329.54 1.73 -75.69 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.27 Total: 29.08 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 4.28 Total: 17.17 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.73 Total: -102.97 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.11 Total: -61.53 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -77.42 1.73 -75.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.273 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds