Wall clock time and date at job start Tue Mar 31 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46966 * 299.99837 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99935 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.46504 * 119.99854 * 180.27510 * 11 9 7 13 13 H 1.09002 * 110.88577 * 325.69404 * 12 11 9 14 14 C 1.55151 * 111.00487 * 89.57885 * 12 11 9 15 15 C 1.54321 * 102.94093 * 153.57529 * 14 12 11 16 16 N 1.47021 * 107.27206 * 337.80460 * 15 14 12 17 17 C 1.34773 * 125.64856 * 178.99784 * 16 15 14 18 18 O 1.21279 * 120.00016 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00321 * 359.97438 * 17 16 15 20 20 C 1.54273 * 110.02776 * 297.90929 * 19 17 16 21 21 C 1.54970 * 104.15803 * 217.13289 * 20 19 17 22 22 C 1.54894 * 102.77653 * 37.89046 * 21 20 19 23 23 C 1.53872 * 110.03385 * 180.69476 * 19 17 16 24 24 C 1.47466 * 108.72376 * 358.97696 * 16 15 14 25 25 H 0.97004 * 120.00230 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99736 * 0.26784 * 11 9 7 27 27 H 1.09001 * 110.71949 * 271.93702 * 14 12 11 28 28 H 1.09000 * 110.72121 * 35.20960 * 14 12 11 29 29 H 1.09002 * 109.88542 * 97.22729 * 15 14 12 30 30 H 1.09004 * 109.88190 * 218.38532 * 15 14 12 31 31 H 1.08996 * 110.01250 * 59.29710 * 19 17 16 32 32 H 1.08999 * 110.49029 * 335.78080 * 20 19 17 33 33 H 1.09005 * 110.48089 * 98.42776 * 20 19 17 34 34 H 1.09002 * 110.72055 * 279.57724 * 21 20 19 35 35 H 1.08994 * 110.91991 * 156.29564 * 21 20 19 36 36 H 1.08993 * 110.48596 * 203.40486 * 22 21 20 37 37 H 1.08996 * 110.59504 * 80.81509 * 22 21 20 38 38 H 1.09001 * 110.02706 * 238.56505 * 23 19 17 39 39 H 1.08994 * 110.03396 * 359.94518 * 23 19 17 40 40 H 1.09005 * 110.34814 * 265.25327 * 24 16 15 41 41 H 1.08996 * 110.41101 * 142.91481 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 1.2165 -4.9164 -0.0106 13 1 0.2935 -4.8350 0.5634 14 6 0.9299 -5.3861 -1.4612 15 6 0.8198 -6.9183 -1.3131 16 7 1.5348 -7.2904 -0.0835 17 6 1.6533 -8.5393 0.4089 18 8 2.2693 -8.7304 1.4359 19 6 1.0202 -9.6986 -0.3168 20 6 -0.5107 -9.5160 -0.3703 21 6 -1.0699 -10.9509 -0.1972 22 6 -0.0999 -11.5741 0.8372 23 6 1.2814 -11.0067 0.4503 24 6 2.1015 -6.0710 0.5220 25 1 -0.4851 0.8401 -0.0004 26 1 2.9191 -3.6476 -0.0042 27 1 -0.0078 -4.9655 -1.8246 28 1 1.7547 -5.1209 -2.1226 29 1 -0.2279 -7.2089 -1.2351 30 1 1.2794 -7.4077 -2.1717 31 1 1.4231 -9.7712 -1.3270 32 1 -0.8472 -8.8748 0.4445 33 1 -0.8120 -9.1018 -1.3325 34 1 -1.0313 -11.4962 -1.1403 35 1 -2.0875 -10.9277 0.1926 36 1 -0.1023 -12.6610 0.7559 37 1 -0.3687 -11.2675 1.8481 38 1 1.8103 -11.7145 -0.1880 39 1 1.8668 -10.8032 1.3469 40 1 3.1350 -5.9348 0.2035 41 1 2.0425 -6.1237 1.6091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613083460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:41 Heat of formation + Delta-G solvation = -88.222514 kcal Electronic energy + Delta-G solvation = -22014.034963 eV Core-core repulsion = 18699.853617 eV Total energy + Delta-G solvation = -3314.181346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40440 -38.34204 -37.06490 -36.39972 -33.21096 -32.31824 -30.42369 -29.60029 -28.88780 -27.92909 -26.03126 -23.60046 -21.32123 -21.10531 -20.69863 -19.62990 -18.78948 -17.51582 -17.22352 -16.20223 -15.66053 -15.60118 -15.34877 -14.70300 -14.26122 -13.93072 -13.61891 -13.55106 -13.22908 -12.89090 -12.63440 -12.44665 -12.08550 -11.82334 -11.72035 -11.48664 -11.29412 -11.21125 -11.19457 -11.01421 -10.97118 -10.84506 -10.68575 -10.51333 -10.41779 -10.22618 -9.70630 -8.90698 -8.58782 -7.70215 -7.62476 -6.24075 -4.69597 2.64855 2.96825 3.10464 3.19217 3.23475 4.06993 4.25351 4.37235 4.46047 4.52791 4.65346 4.81422 4.95214 5.10103 5.15655 5.20632 5.26241 5.31980 5.40782 5.45385 5.47393 5.59209 5.64095 5.70052 5.72900 5.80080 5.88779 5.96191 5.98476 6.09584 6.10792 6.16149 6.36009 6.42392 6.59079 7.39135 7.56554 7.83772 8.00312 8.18758 8.27096 8.97814 9.44369 10.53722 10.71734 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044913 B = 0.003184 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.278716 B = 8792.537421 C = 9072.414623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.756 5.756 12 C 0.150 3.850 13 H 0.092 0.908 14 C -0.145 4.145 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.533 3.467 18 O -0.544 6.544 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.119 4.119 24 C 0.099 3.901 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -18.451 -3.696 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.411 5.411 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.185 4.185 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.321 3.679 18 O -0.422 6.422 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.024 4.024 25 H 0.079 0.921 26 H 0.214 0.786 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.232 -18.500 -3.111 18.761 hybrid contribution 0.950 0.884 -0.197 1.313 sum 1.182 -17.615 -3.308 17.962 Atomic orbital electron populations 1.70026 1.07055 1.27242 1.35224 1.25708 0.94633 1.00341 0.92582 0.86309 0.80496 0.81687 0.78229 1.18762 1.20164 1.20144 1.20907 0.93662 0.89263 1.54234 0.91316 1.18245 0.87234 0.82280 0.76219 1.90603 1.14030 1.86648 1.54835 1.46074 1.08513 1.04125 1.82361 1.21551 0.95917 0.84121 0.94246 0.89043 1.23122 1.03703 0.92047 0.99579 1.22204 0.96855 0.96913 0.86388 1.48402 1.53929 1.06341 1.26008 1.20254 0.79950 0.82743 0.84912 1.90659 1.42932 1.83927 1.24665 1.21897 0.96989 0.93733 1.00328 1.22427 0.92425 0.97900 1.02640 1.22515 0.98933 0.95317 0.99344 1.22361 0.94688 0.99818 0.99301 1.22167 0.98031 0.94096 1.01394 1.22483 0.97353 0.83483 0.99081 0.92115 0.78582 0.89567 0.90569 0.91031 0.91644 0.88597 0.90981 0.90621 0.91310 0.91296 0.91611 0.91509 0.91558 0.89221 0.91324 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.53 11.83 55.55 0.66 -21.88 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.78 29.56 -169.99 -5.02 14.76 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.54 -14.94 9.54 -35.63 -0.34 -15.28 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.19 7.75 -12.99 -0.10 15.09 16 10 O -0.58 -18.03 14.71 5.20 0.08 -17.95 16 11 N -0.76 -16.02 5.21 -53.13 -0.28 -16.30 16 12 C 0.15 2.71 3.37 -65.78 -0.22 2.49 16 13 H 0.09 1.91 7.63 -51.93 -0.40 1.51 16 14 C -0.14 -2.21 6.65 -24.90 -0.17 -2.38 16 15 C 0.10 1.20 6.08 -3.07 -0.02 1.18 16 16 N -0.61 -8.61 3.33 -170.48 -0.57 -9.18 16 17 C 0.53 7.64 7.06 -10.99 -0.08 7.56 16 18 O -0.54 -9.69 15.47 5.56 0.09 -9.61 16 19 C -0.11 -1.13 2.78 -90.65 -0.25 -1.39 16 20 C -0.12 -1.07 4.92 -25.02 -0.12 -1.20 16 21 C -0.12 -0.97 6.91 -24.69 -0.17 -1.14 16 22 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 23 C -0.12 -1.20 6.40 -25.61 -0.16 -1.36 16 24 C 0.10 1.55 6.54 -2.50 -0.02 1.54 16 25 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 26 H 0.38 7.14 8.52 -40.82 -0.35 6.79 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.78 6.15 -51.93 -0.32 0.46 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 33 H 0.08 0.60 7.09 -51.93 -0.37 0.23 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.12 6.39 -51.93 -0.33 0.79 16 40 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 41 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -34.15 330.83 -8.33 -42.49 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.35 Total: 6.51 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.92 Total: 6.17 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.19 Total: -47.35 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.16 Total: -27.56 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.15 -8.33 -42.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.736 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds