Wall clock time and date at job start Tue Mar 31 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46966 * 299.99837 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99935 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.46504 * 119.99854 * 180.27510 * 11 9 7 13 13 H 1.09002 * 110.88577 * 325.69404 * 12 11 9 14 14 C 1.55151 * 111.00487 * 89.57885 * 12 11 9 15 15 C 1.54321 * 102.94093 * 153.57529 * 14 12 11 16 16 N 1.47021 * 107.27206 * 337.80460 * 15 14 12 17 17 C 1.34773 * 125.64856 * 178.99784 * 16 15 14 18 18 O 1.21279 * 120.00016 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00321 * 359.97438 * 17 16 15 20 20 C 1.54273 * 110.02776 * 297.90929 * 19 17 16 21 21 C 1.54970 * 104.15803 * 217.13289 * 20 19 17 22 22 C 1.54894 * 102.77653 * 37.89046 * 21 20 19 23 23 C 1.53872 * 110.03385 * 180.69476 * 19 17 16 24 24 C 1.47466 * 108.72376 * 358.97696 * 16 15 14 25 25 H 0.97004 * 120.00230 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99736 * 0.26784 * 11 9 7 27 27 H 1.09001 * 110.71949 * 271.93702 * 14 12 11 28 28 H 1.09000 * 110.72121 * 35.20960 * 14 12 11 29 29 H 1.09002 * 109.88542 * 97.22729 * 15 14 12 30 30 H 1.09004 * 109.88190 * 218.38532 * 15 14 12 31 31 H 1.08996 * 110.01250 * 59.29710 * 19 17 16 32 32 H 1.08999 * 110.49029 * 335.78080 * 20 19 17 33 33 H 1.09005 * 110.48089 * 98.42776 * 20 19 17 34 34 H 1.09002 * 110.72055 * 279.57724 * 21 20 19 35 35 H 1.08994 * 110.91991 * 156.29564 * 21 20 19 36 36 H 1.08993 * 110.48596 * 203.40486 * 22 21 20 37 37 H 1.08996 * 110.59504 * 80.81509 * 22 21 20 38 38 H 1.09001 * 110.02706 * 238.56505 * 23 19 17 39 39 H 1.08994 * 110.03396 * 359.94518 * 23 19 17 40 40 H 1.09005 * 110.34814 * 265.25327 * 24 16 15 41 41 H 1.08996 * 110.41101 * 142.91481 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 1.2165 -4.9164 -0.0106 13 1 0.2935 -4.8350 0.5634 14 6 0.9299 -5.3861 -1.4612 15 6 0.8198 -6.9183 -1.3131 16 7 1.5348 -7.2904 -0.0835 17 6 1.6533 -8.5393 0.4089 18 8 2.2693 -8.7304 1.4359 19 6 1.0202 -9.6986 -0.3168 20 6 -0.5107 -9.5160 -0.3703 21 6 -1.0699 -10.9509 -0.1972 22 6 -0.0999 -11.5741 0.8372 23 6 1.2814 -11.0067 0.4503 24 6 2.1015 -6.0710 0.5220 25 1 -0.4851 0.8401 -0.0004 26 1 2.9191 -3.6476 -0.0042 27 1 -0.0078 -4.9655 -1.8246 28 1 1.7547 -5.1209 -2.1226 29 1 -0.2279 -7.2089 -1.2351 30 1 1.2794 -7.4077 -2.1717 31 1 1.4231 -9.7712 -1.3270 32 1 -0.8472 -8.8748 0.4445 33 1 -0.8120 -9.1018 -1.3325 34 1 -1.0313 -11.4962 -1.1403 35 1 -2.0875 -10.9277 0.1926 36 1 -0.1023 -12.6610 0.7559 37 1 -0.3687 -11.2675 1.8481 38 1 1.8103 -11.7145 -0.1880 39 1 1.8668 -10.8032 1.3469 40 1 3.1350 -5.9348 0.2035 41 1 2.0425 -6.1237 1.6091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613083460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:41 Heat of formation + Delta-G solvation = -112.264988 kcal Electronic energy + Delta-G solvation = -22015.077523 eV Core-core repulsion = 18699.853617 eV Total energy + Delta-G solvation = -3315.223906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52683 -39.81858 -38.41879 -37.73722 -34.99461 -34.33517 -31.80680 -30.60860 -29.65024 -29.26768 -27.90070 -24.81069 -22.81011 -22.02082 -21.56758 -21.37579 -19.83036 -19.27994 -18.43811 -17.68224 -17.20846 -16.74418 -16.51578 -16.03053 -15.69163 -15.35684 -14.89817 -14.68278 -14.48858 -14.27944 -14.09623 -13.97755 -13.50373 -13.18333 -12.89241 -12.70646 -12.68115 -12.62694 -12.40468 -12.26528 -12.03346 -11.98623 -11.88801 -11.75105 -11.64883 -11.40753 -10.94569 -10.84692 -9.87713 -9.76417 -9.49901 -8.29786 -6.85667 1.40542 1.41379 1.53778 1.58739 1.82424 2.25551 2.46288 3.07950 3.30186 3.54386 3.59500 3.65182 3.72751 3.89419 4.05587 4.19813 4.20933 4.26573 4.46516 4.51116 4.55477 4.58611 4.67075 4.71405 4.81903 4.83388 4.97665 5.04391 5.09253 5.12801 5.17550 5.23626 5.25431 5.32874 5.43083 5.47477 5.87345 6.19175 6.25797 6.45377 6.87288 7.05758 7.51940 8.48360 8.66761 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044913 B = 0.003184 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.278716 B = 8792.537421 C = 9072.414623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.543 3.457 10 O -0.628 6.628 11 N -0.744 5.744 12 C 0.144 3.856 13 H 0.056 0.944 14 C -0.137 4.137 15 C 0.108 3.892 16 N -0.614 5.614 17 C 0.527 3.473 18 O -0.587 6.587 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.120 4.120 24 C 0.111 3.889 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -19.455 -5.546 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.608 4.608 8 H 0.105 0.895 9 C 0.347 3.653 10 O -0.514 6.514 11 N -0.398 5.398 12 C 0.036 3.964 13 H 0.074 0.926 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.347 5.347 17 C 0.318 3.682 18 O -0.467 6.467 19 C -0.123 4.123 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.158 4.158 24 C -0.013 4.013 25 H 0.084 0.916 26 H 0.231 0.769 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.363 -19.557 -4.979 20.227 hybrid contribution 0.606 1.133 0.426 1.353 sum 1.968 -18.424 -4.553 19.080 Atomic orbital electron populations 1.70184 1.09436 1.28871 1.36470 1.26936 0.95518 1.04875 0.91259 0.84983 0.79358 0.75563 0.78466 1.17077 1.19283 1.19596 1.21446 0.94760 0.90016 1.54578 0.89458 1.18547 0.86832 0.84055 0.75865 1.90560 1.16068 1.87762 1.57044 1.45678 1.09164 1.03956 1.81005 1.21577 0.94753 0.83625 0.96411 0.92610 1.22997 1.03119 0.94489 0.97080 1.22285 0.98095 0.94382 0.86645 1.48482 1.53902 1.05816 1.26477 1.21055 0.79246 0.83366 0.84534 1.90645 1.44875 1.84546 1.26656 1.22007 0.97508 0.91757 1.01031 1.22462 0.91430 0.98720 1.02851 1.22515 0.98724 0.94239 0.99967 1.22372 0.94116 1.00950 0.98783 1.22181 0.98631 0.94524 1.00494 1.22216 0.97548 0.83451 0.98120 0.91581 0.76937 0.91204 0.89724 0.89474 0.87859 0.85778 0.93300 0.88555 0.89206 0.90839 0.89834 0.93172 0.89505 0.92278 0.89847 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.49 11.83 21.83 0.26 -49.23 16 2 C 0.03 1.61 5.50 85.30 0.47 2.08 16 3 Si 1.00 40.40 29.56 68.60 2.03 42.43 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.57 -31.71 9.54 24.83 0.24 -31.47 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.32 16 9 C 0.54 30.58 7.75 86.36 0.67 31.25 16 10 O -0.63 -40.92 14.71 -4.33 -0.06 -40.99 16 11 N -0.74 -32.15 5.21 -440.22 -2.29 -34.44 16 12 C 0.14 5.34 3.37 46.38 0.16 5.50 16 13 H 0.06 2.48 7.63 -2.39 -0.02 2.46 16 14 C -0.14 -4.10 6.65 31.78 0.21 -3.89 16 15 C 0.11 2.33 6.08 86.73 0.53 2.86 16 16 N -0.61 -16.54 3.33 -811.68 -2.70 -19.24 16 17 C 0.53 14.65 7.06 87.66 0.62 15.27 16 18 O -0.59 -21.24 15.47 -3.03 -0.05 -21.28 16 19 C -0.10 -1.89 2.78 -10.81 -0.03 -1.92 16 20 C -0.12 -1.87 4.92 31.70 0.16 -1.71 16 21 C -0.12 -1.50 6.91 31.92 0.22 -1.28 16 22 C -0.12 -1.92 6.83 31.67 0.22 -1.71 16 23 C -0.12 -2.22 6.40 31.32 0.20 -2.02 16 24 C 0.11 3.47 6.54 86.85 0.57 4.04 16 25 H 0.27 14.96 8.29 -92.71 -0.77 14.19 16 26 H 0.40 14.76 8.52 -92.71 -0.79 13.97 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 1.66 6.15 -2.39 -0.01 1.65 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.01 7.85 -2.39 -0.02 1.00 16 33 H 0.10 1.15 7.09 -2.38 -0.02 1.13 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.48 6.39 -2.39 -0.02 1.47 16 40 H 0.08 2.38 8.00 -2.38 -0.02 2.37 16 41 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 Total: -1.00 -78.34 330.83 1.64 -76.70 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.24 Total: 29.06 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 4.22 Total: 17.00 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.74 Total: -102.91 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -0.11 Total: -62.27 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -78.34 1.64 -76.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.569 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds