Wall clock time and date at job start Tue Mar 31 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 119.99583 * 2 1 4 4 H 1.48507 * 109.47001 * 179.72783 * 3 2 1 5 5 H 1.48495 * 109.47366 * 299.72427 * 3 2 1 6 6 H 1.48497 * 109.47429 * 59.72841 * 3 2 1 7 7 C 1.40048 * 120.00289 * 179.72713 * 2 1 3 8 8 H 1.07991 * 120.00266 * 26.04115 * 7 2 1 9 9 C 1.46378 * 119.99763 * 206.04812 * 7 2 1 10 10 O 1.21683 * 120.00205 * 11.99160 * 9 7 2 11 11 N 1.34775 * 119.99734 * 191.99260 * 9 7 2 12 12 C 1.46499 * 120.00209 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.43605 * 323.91959 * 12 11 9 14 14 C 1.54621 * 110.49003 * 201.22867 * 12 11 9 15 15 C 1.54481 * 101.76644 * 266.12202 * 14 12 11 16 16 N 1.46760 * 105.47165 * 334.58389 * 15 14 12 17 17 C 1.46503 * 124.34974 * 196.99350 * 16 15 14 18 18 C 1.52995 * 109.47598 * 240.05121 * 17 16 15 19 19 C 1.52995 * 109.47463 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47063 * 60.00133 * 19 18 17 21 21 C 1.53002 * 109.46875 * 299.99766 * 20 19 18 22 22 C 1.53004 * 109.47275 * 60.00224 * 21 20 19 23 23 C 1.34417 * 111.30536 * 17.01369 * 16 15 14 24 24 O 1.21278 * 124.94370 * 179.62319 * 23 16 15 25 25 H 0.97001 * 119.99550 * 185.08316 * 1 2 3 26 26 H 0.97001 * 120.00221 * 0.02562 * 11 9 7 27 27 H 1.08993 * 110.97045 * 24.24501 * 14 12 11 28 28 H 1.09007 * 110.96794 * 148.00274 * 14 12 11 29 29 H 1.09009 * 110.24436 * 215.58379 * 15 14 12 30 30 H 1.08995 * 110.31972 * 93.62530 * 15 14 12 31 31 H 1.09003 * 109.46889 * 0.05203 * 17 16 15 32 32 H 1.09003 * 109.46639 * 300.00297 * 18 17 16 33 33 H 1.09007 * 109.46773 * 59.99274 * 18 17 16 34 34 H 1.09003 * 109.47114 * 300.00136 * 19 18 17 35 35 H 1.08999 * 109.47206 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47113 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.46974 * 59.99484 * 20 19 18 38 38 H 1.09001 * 109.47146 * 300.00522 * 21 20 19 39 39 H 1.08998 * 109.47034 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47397 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47001 * 59.99588 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3466 0.0067 5 1 1.8869 2.3936 -1.2158 6 1 1.8769 2.3994 1.2091 7 6 2.0070 -1.2128 0.0058 8 1 1.5493 -2.1025 -0.4006 9 6 3.3593 -1.2744 0.5628 10 8 3.7927 -0.3415 1.2127 11 7 4.1243 -2.3645 0.3556 12 6 5.4779 -2.4260 0.9126 13 1 5.9469 -1.4426 0.8824 14 6 6.3328 -3.4603 0.1443 15 6 6.1435 -4.7281 1.0064 16 7 5.8258 -4.2414 2.3539 17 6 5.9134 -5.0554 3.5689 18 6 4.5369 -5.1310 4.2326 19 6 4.6283 -5.9816 5.5010 20 6 5.6276 -5.3465 6.4701 21 6 7.0041 -5.2710 5.8064 22 6 6.9127 -4.4203 4.5379 23 6 5.4436 -2.9529 2.3303 24 8 5.1192 -2.3066 3.3039 25 1 -0.4849 -0.8368 0.0744 26 1 3.7790 -3.1080 -0.1628 27 1 5.9476 -3.6129 -0.8639 28 1 7.3800 -3.1587 0.1186 29 1 7.0631 -5.3132 1.0237 30 1 5.3214 -5.3299 0.6191 31 1 6.2475 -6.0600 3.3097 32 1 4.2029 -4.1262 4.4916 33 1 3.8251 -5.5838 3.5422 34 1 4.9622 -6.9862 5.2414 35 1 3.6478 -6.0350 5.9740 36 1 5.6930 -5.9527 7.3735 37 1 5.2937 -4.3419 6.7295 38 1 7.3379 -6.2756 5.5468 39 1 7.7160 -4.8189 6.4969 40 1 7.8935 -4.3661 4.0653 41 1 6.5788 -3.4157 4.7974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613995705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:54 Heat of formation + Delta-G solvation = -96.414764 kcal Electronic energy + Delta-G solvation = -22895.005077 eV Core-core repulsion = 19580.468488 eV Total energy + Delta-G solvation = -3314.536589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56030 -38.21440 -37.11487 -35.97623 -33.55594 -32.77716 -31.18049 -30.81996 -28.40265 -27.19119 -25.46873 -22.90613 -22.65254 -21.61934 -20.19262 -19.96676 -18.63585 -17.99535 -16.67343 -16.17710 -15.54035 -14.97926 -14.77569 -14.47301 -14.13734 -14.05631 -13.97861 -13.68185 -13.33447 -12.93278 -12.76932 -12.42410 -12.30732 -12.24742 -12.15951 -11.97955 -11.51155 -11.40129 -11.10711 -10.98064 -10.71751 -10.67292 -10.38791 -10.30003 -10.03123 -9.53626 -9.19674 -8.78341 -8.45557 -7.97049 -7.64527 -6.98310 -4.81614 2.98113 3.13145 3.55288 3.62212 4.06880 4.26052 4.50761 4.53213 4.58683 4.65736 4.68642 4.80386 4.84535 4.97571 5.11548 5.20281 5.25911 5.28496 5.43474 5.44415 5.45421 5.50651 5.54723 5.68454 5.84428 5.90344 5.92639 5.95827 6.04479 6.14115 6.16934 6.20595 6.29775 6.40644 6.87358 7.37820 7.59473 7.69757 7.81971 8.16652 8.65137 8.88067 9.13440 10.23672 10.31851 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004798 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.594051 B = 5834.463980 C = 6232.935771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.077 3.923 3 Si 1.082 2.918 4 H -0.251 1.251 5 H -0.308 1.308 6 H -0.286 1.286 7 C -0.613 4.613 8 H 0.069 0.931 9 C 0.550 3.450 10 O -0.602 6.602 11 N -0.739 5.739 12 C 0.125 3.875 13 H 0.108 0.892 14 C -0.142 4.142 15 C 0.107 3.893 16 N -0.626 5.626 17 C 0.165 3.835 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.135 4.135 23 C 0.508 3.492 24 O -0.505 6.505 25 H 0.280 0.720 26 H 0.387 0.613 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.073 -15.211 4.227 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.909 3.091 4 H -0.175 1.175 5 H -0.237 1.237 6 H -0.212 1.212 7 C -0.648 4.648 8 H 0.087 0.913 9 C 0.357 3.643 10 O -0.491 6.491 11 N -0.394 5.394 12 C 0.014 3.986 13 H 0.126 0.874 14 C -0.180 4.180 15 C -0.017 4.017 16 N -0.363 5.363 17 C 0.063 3.937 18 C -0.175 4.175 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.173 4.173 23 C 0.293 3.707 24 O -0.376 6.376 25 H 0.091 0.909 26 H 0.220 0.780 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.947 -12.659 5.209 19.543 hybrid contribution -0.209 -2.473 -0.249 2.495 sum 13.738 -15.132 4.960 21.032 Atomic orbital electron populations 1.70600 1.08237 1.31993 1.34191 1.26892 0.94918 1.04505 0.88007 0.83350 0.78144 0.72098 0.75502 1.17537 1.23717 1.21223 1.21825 0.98307 0.98957 1.45741 0.91255 1.18393 0.85397 0.80061 0.80421 1.90493 1.75671 1.37422 1.45522 1.45836 1.13027 1.22121 1.58388 1.21247 0.87413 1.00076 0.89821 0.87385 1.22896 1.01083 0.94381 0.99630 1.22008 1.00618 0.96820 0.82214 1.48508 1.68689 1.12249 1.06806 1.20861 0.95656 0.93540 0.83665 1.21942 0.96535 1.02238 0.96757 1.21468 0.99431 0.98562 0.95595 1.21571 0.95103 1.01448 0.97892 1.21467 0.97226 0.99727 0.96611 1.21938 0.98679 1.01236 0.95453 1.21693 0.75523 0.81216 0.92248 1.90682 1.45602 1.61472 1.39894 0.90896 0.77970 0.88679 0.89374 0.90838 0.91525 0.90156 0.90041 0.91986 0.92220 0.91781 0.92127 0.91612 0.92197 0.91857 0.92072 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.18 13.64 55.55 0.76 -23.42 16 2 C 0.08 2.24 5.48 -17.37 -0.10 2.15 16 3 Si 1.08 28.43 27.33 -169.99 -4.65 23.79 16 4 H -0.25 -6.80 5.80 56.52 0.33 -6.47 16 5 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.61 -17.59 9.81 -35.63 -0.35 -17.94 16 8 H 0.07 1.96 8.06 -52.49 -0.42 1.53 16 9 C 0.55 15.07 7.31 -12.99 -0.09 14.97 16 10 O -0.60 -18.28 12.48 5.20 0.06 -18.22 16 11 N -0.74 -15.77 5.12 -55.23 -0.28 -16.05 16 12 C 0.12 2.28 3.23 -67.94 -0.22 2.06 16 13 H 0.11 2.21 7.66 -51.93 -0.40 1.81 16 14 C -0.14 -1.65 6.77 -25.10 -0.17 -1.82 16 15 C 0.11 1.14 7.30 -3.12 -0.02 1.12 16 16 N -0.63 -9.01 2.83 -164.84 -0.47 -9.47 16 17 C 0.17 2.09 2.74 -67.93 -0.19 1.90 16 18 C -0.14 -1.88 5.21 -26.74 -0.14 -2.02 16 19 C -0.11 -1.21 5.92 -26.73 -0.16 -1.37 16 20 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 21 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.13 -1.67 5.21 -26.73 -0.14 -1.80 16 23 C 0.51 9.81 7.04 -10.86 -0.08 9.74 16 24 O -0.50 -12.09 15.12 5.56 0.08 -12.00 16 25 H 0.28 7.94 8.72 -40.82 -0.36 7.59 16 26 H 0.39 7.18 8.55 -40.82 -0.35 6.84 16 27 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.08 1.45 6.78 -51.93 -0.35 1.10 16 33 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.28 6.80 -51.93 -0.35 0.92 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -35.43 326.64 -8.12 -43.55 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.59 Total: 2.61 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.97 Total: 4.30 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.01 Total: -48.94 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: 0.15 Total: -30.22 kcal Atomic # 14 Polarization: 28.43 SS G_CDS: -4.65 Total: 23.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.43 -8.12 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613995705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.865 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds