Wall clock time and date at job start Tue Mar 31 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 119.99583 * 2 1 4 4 H 1.48507 * 109.47001 * 179.72783 * 3 2 1 5 5 H 1.48495 * 109.47366 * 299.72427 * 3 2 1 6 6 H 1.48497 * 109.47429 * 59.72841 * 3 2 1 7 7 C 1.40048 * 120.00289 * 179.72713 * 2 1 3 8 8 H 1.07991 * 120.00266 * 26.04115 * 7 2 1 9 9 C 1.46378 * 119.99763 * 206.04812 * 7 2 1 10 10 O 1.21683 * 120.00205 * 11.99160 * 9 7 2 11 11 N 1.34775 * 119.99734 * 191.99260 * 9 7 2 12 12 C 1.46499 * 120.00209 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.43605 * 323.91959 * 12 11 9 14 14 C 1.54621 * 110.49003 * 201.22867 * 12 11 9 15 15 C 1.54481 * 101.76644 * 266.12202 * 14 12 11 16 16 N 1.46760 * 105.47165 * 334.58389 * 15 14 12 17 17 C 1.46503 * 124.34974 * 196.99350 * 16 15 14 18 18 C 1.52995 * 109.47598 * 240.05121 * 17 16 15 19 19 C 1.52995 * 109.47463 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47063 * 60.00133 * 19 18 17 21 21 C 1.53002 * 109.46875 * 299.99766 * 20 19 18 22 22 C 1.53004 * 109.47275 * 60.00224 * 21 20 19 23 23 C 1.34417 * 111.30536 * 17.01369 * 16 15 14 24 24 O 1.21278 * 124.94370 * 179.62319 * 23 16 15 25 25 H 0.97001 * 119.99550 * 185.08316 * 1 2 3 26 26 H 0.97001 * 120.00221 * 0.02562 * 11 9 7 27 27 H 1.08993 * 110.97045 * 24.24501 * 14 12 11 28 28 H 1.09007 * 110.96794 * 148.00274 * 14 12 11 29 29 H 1.09009 * 110.24436 * 215.58379 * 15 14 12 30 30 H 1.08995 * 110.31972 * 93.62530 * 15 14 12 31 31 H 1.09003 * 109.46889 * 0.05203 * 17 16 15 32 32 H 1.09003 * 109.46639 * 300.00297 * 18 17 16 33 33 H 1.09007 * 109.46773 * 59.99274 * 18 17 16 34 34 H 1.09003 * 109.47114 * 300.00136 * 19 18 17 35 35 H 1.08999 * 109.47206 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47113 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.46974 * 59.99484 * 20 19 18 38 38 H 1.09001 * 109.47146 * 300.00522 * 21 20 19 39 39 H 1.08998 * 109.47034 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47397 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47001 * 59.99588 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3466 0.0067 5 1 1.8869 2.3936 -1.2158 6 1 1.8769 2.3994 1.2091 7 6 2.0070 -1.2128 0.0058 8 1 1.5493 -2.1025 -0.4006 9 6 3.3593 -1.2744 0.5628 10 8 3.7927 -0.3415 1.2127 11 7 4.1243 -2.3645 0.3556 12 6 5.4779 -2.4260 0.9126 13 1 5.9469 -1.4426 0.8824 14 6 6.3328 -3.4603 0.1443 15 6 6.1435 -4.7281 1.0064 16 7 5.8258 -4.2414 2.3539 17 6 5.9134 -5.0554 3.5689 18 6 4.5369 -5.1310 4.2326 19 6 4.6283 -5.9816 5.5010 20 6 5.6276 -5.3465 6.4701 21 6 7.0041 -5.2710 5.8064 22 6 6.9127 -4.4203 4.5379 23 6 5.4436 -2.9529 2.3303 24 8 5.1192 -2.3066 3.3039 25 1 -0.4849 -0.8368 0.0744 26 1 3.7790 -3.1080 -0.1628 27 1 5.9476 -3.6129 -0.8639 28 1 7.3800 -3.1587 0.1186 29 1 7.0631 -5.3132 1.0237 30 1 5.3214 -5.3299 0.6191 31 1 6.2475 -6.0600 3.3097 32 1 4.2029 -4.1262 4.4916 33 1 3.8251 -5.5838 3.5422 34 1 4.9622 -6.9862 5.2414 35 1 3.6478 -6.0350 5.9740 36 1 5.6930 -5.9527 7.3735 37 1 5.2937 -4.3419 6.7295 38 1 7.3379 -6.2756 5.5468 39 1 7.7160 -4.8189 6.4969 40 1 7.8935 -4.3661 4.0653 41 1 6.5788 -3.4157 4.7974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613995705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:53 Heat of formation + Delta-G solvation = -122.602924 kcal Electronic energy + Delta-G solvation = -22896.140681 eV Core-core repulsion = 19580.468488 eV Total energy + Delta-G solvation = -3315.672193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86383 -39.72244 -38.70209 -37.42993 -35.26359 -34.88061 -32.51700 -31.75356 -29.59887 -28.76788 -27.27678 -23.93275 -23.58727 -22.88722 -22.00852 -21.04310 -20.14921 -19.92439 -17.99952 -17.64038 -17.21101 -16.52852 -15.94953 -15.83224 -15.79495 -15.37576 -15.15798 -14.91944 -14.76465 -14.57992 -14.29924 -14.14744 -13.87488 -13.49118 -13.24137 -13.18030 -12.84635 -12.59704 -12.43455 -12.18019 -12.14949 -12.05148 -11.63533 -11.47342 -11.31031 -11.22170 -11.05908 -10.92354 -10.11101 -9.63222 -9.55166 -9.23661 -7.08683 1.39711 1.46891 1.50741 1.94809 1.98377 2.13015 2.45043 2.98909 3.20775 3.48872 3.52330 3.75902 3.76769 3.90781 4.02747 4.18368 4.22295 4.26965 4.34626 4.50195 4.53832 4.56553 4.61212 4.71746 4.87449 4.98924 5.01999 5.02129 5.07760 5.15115 5.22136 5.23043 5.33141 5.45862 5.49000 5.55785 5.77224 5.88744 5.96466 6.18260 6.62991 7.16276 7.26499 8.04441 8.10953 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004798 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.594051 B = 5834.463980 C = 6232.935771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.042 3.958 3 Si 1.115 2.885 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.292 1.292 7 C -0.631 4.631 8 H 0.067 0.933 9 C 0.546 3.454 10 O -0.637 6.637 11 N -0.725 5.725 12 C 0.112 3.888 13 H 0.078 0.922 14 C -0.122 4.122 15 C 0.101 3.899 16 N -0.614 5.614 17 C 0.160 3.840 18 C -0.136 4.136 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.106 4.106 22 C -0.132 4.132 23 C 0.495 3.505 24 O -0.568 6.568 25 H 0.279 0.721 26 H 0.403 0.597 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.441 -18.586 3.276 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.175 4.175 3 Si 0.939 3.061 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.219 1.219 7 C -0.667 4.667 8 H 0.085 0.915 9 C 0.351 3.649 10 O -0.529 6.529 11 N -0.379 5.379 12 C 0.002 3.998 13 H 0.096 0.904 14 C -0.160 4.160 15 C -0.020 4.020 16 N -0.348 5.348 17 C 0.059 3.941 18 C -0.174 4.174 19 C -0.144 4.144 20 C -0.162 4.162 21 C -0.143 4.143 22 C -0.170 4.170 23 C 0.280 3.720 24 O -0.446 6.446 25 H 0.089 0.911 26 H 0.238 0.762 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.331 -16.129 4.200 23.334 hybrid contribution -0.912 -1.513 0.081 1.769 sum 15.418 -17.642 4.281 23.818 Atomic orbital electron populations 1.70626 1.08446 1.31994 1.35390 1.27710 0.95301 1.06692 0.87753 0.82919 0.76281 0.70478 0.76421 1.19395 1.20374 1.21875 1.22006 0.99450 0.98979 1.46249 0.91453 1.18338 0.85645 0.81122 0.79784 1.90474 1.76392 1.39224 1.46790 1.45410 1.13991 1.20844 1.57645 1.21497 0.86216 1.01098 0.91002 0.90428 1.22948 1.01084 0.92091 0.99879 1.22419 1.03515 0.96618 0.79449 1.48611 1.66334 1.10591 1.09230 1.21152 0.94859 0.95131 0.82975 1.21904 0.97330 0.99685 0.98494 1.21457 0.99657 0.99359 0.93950 1.21592 0.95496 1.00104 0.98980 1.21461 0.96825 1.00832 0.95229 1.21895 0.98909 0.99239 0.96970 1.21884 0.75477 0.82896 0.91708 1.90651 1.48651 1.63479 1.41779 0.91070 0.76155 0.86460 0.86656 0.86150 0.89894 0.85529 0.95511 0.92490 0.88947 0.92168 0.89696 0.94840 0.88988 0.91268 0.90704 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.78 13.64 21.83 0.30 -49.48 16 2 C 0.04 2.50 5.48 85.30 0.47 2.97 16 3 Si 1.11 58.69 27.33 68.60 1.88 60.56 16 4 H -0.27 -14.85 5.80 99.48 0.58 -14.27 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 7 C -0.63 -36.96 9.81 24.83 0.24 -36.72 16 8 H 0.07 3.86 8.06 -2.92 -0.02 3.84 16 9 C 0.55 30.68 7.31 86.36 0.63 31.31 16 10 O -0.64 -40.22 12.48 -4.30 -0.05 -40.27 16 11 N -0.73 -31.01 5.12 -446.87 -2.29 -33.30 16 12 C 0.11 4.06 3.23 44.98 0.15 4.21 16 13 H 0.08 3.29 7.66 -2.39 -0.02 3.27 16 14 C -0.12 -2.39 6.77 31.65 0.21 -2.18 16 15 C 0.10 1.67 7.30 86.83 0.63 2.31 16 16 N -0.61 -16.45 2.83 -794.03 -2.25 -18.70 16 17 C 0.16 3.66 2.74 44.99 0.12 3.79 16 18 C -0.14 -3.72 5.21 30.59 0.16 -3.57 16 19 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 20 C -0.12 -2.42 5.92 30.60 0.18 -2.24 16 21 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 22 C -0.13 -3.10 5.21 30.60 0.16 -2.94 16 23 C 0.49 19.52 7.04 87.90 0.62 20.14 16 24 O -0.57 -29.25 15.12 -3.02 -0.05 -29.30 16 25 H 0.28 16.10 8.72 -92.71 -0.81 15.29 16 26 H 0.40 14.51 8.55 -92.71 -0.79 13.72 16 27 H 0.12 1.85 8.03 -2.39 -0.02 1.84 16 28 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 1.83 8.07 -2.39 -0.02 1.81 16 32 H 0.03 1.02 6.78 -2.39 -0.02 1.00 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.03 1.06 6.80 -2.39 -0.02 1.05 16 Total: -1.00 -84.45 326.64 1.54 -82.91 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.06 Total: 14.04 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 3.94 Total: 13.54 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.24 Total: -101.49 kcal Atomic # 8 Polarization: -69.47 SS G_CDS: -0.10 Total: -69.57 kcal Atomic # 14 Polarization: 58.69 SS G_CDS: 1.88 Total: 60.56 kcal Total: -84.45 1.54 -82.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613995705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.695 kcal (2) G-P(sol) polarization free energy of solvation -84.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds