Wall clock time and date at job start Tue Mar 31 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47291 * 269.99801 * 3 2 1 5 5 H 1.48501 * 109.47119 * 29.99938 * 3 2 1 6 6 H 1.48503 * 109.47117 * 149.99434 * 3 2 1 7 7 C 1.37877 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99738 * 173.70419 * 7 2 1 9 9 C 1.50700 * 120.00273 * 353.70292 * 7 2 1 10 10 C 1.53001 * 115.54848 * 86.10666 * 9 7 2 11 11 O 1.45210 * 109.47062 * 65.10659 * 10 9 7 12 12 C 1.34795 * 116.99973 * 179.97438 * 11 10 9 13 13 O 1.21538 * 119.99806 * 0.02562 * 12 11 10 14 14 C 1.46950 * 119.99933 * 180.02562 * 12 11 10 15 15 C 1.33085 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.50700 * 119.99624 * 179.97438 * 15 14 12 17 17 C 1.53183 * 109.54416 * 119.99716 * 16 15 14 18 18 C 1.53087 * 109.16329 * 176.84766 * 17 16 15 19 19 O 1.42906 * 109.41661 * 302.39165 * 18 17 16 20 20 C 1.42906 * 114.09843 * 61.15900 * 19 18 17 21 21 C 1.53091 * 109.41292 * 298.84276 * 20 19 18 22 22 C 1.52992 * 117.49994 * 231.77828 * 9 7 2 23 23 C 1.53002 * 117.49820 * 300.44016 * 9 7 2 24 24 H 0.97002 * 119.99802 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47288 * 305.10842 * 10 9 7 26 26 H 1.08992 * 109.47266 * 185.10849 * 10 9 7 27 27 H 1.07994 * 120.00056 * 359.97438 * 14 12 11 28 28 H 1.07994 * 120.00192 * 359.97438 * 15 14 12 29 29 H 1.09005 * 109.54436 * 359.82166 * 16 15 14 30 30 H 1.08999 * 109.52258 * 56.94080 * 17 16 15 31 31 H 1.09000 * 109.57092 * 296.78451 * 17 16 15 32 32 H 1.08996 * 109.48097 * 182.41203 * 18 17 16 33 33 H 1.09000 * 109.48713 * 62.37016 * 18 17 16 34 34 H 1.08999 * 109.47791 * 58.82454 * 20 19 18 35 35 H 1.08995 * 109.48348 * 178.86424 * 20 19 18 36 36 H 1.08999 * 109.52437 * 297.70265 * 21 20 19 37 37 H 1.08997 * 109.57733 * 177.54301 * 21 20 19 38 38 H 1.09008 * 117.50201 * 214.99968 * 22 9 7 39 39 H 1.08995 * 117.50134 * 0.02562 * 22 9 7 40 40 H 1.08990 * 117.50201 * 359.97353 * 23 9 7 41 41 H 1.09005 * 117.49622 * 144.96980 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1020 9 6 1.2578 -2.4952 0.1443 10 6 0.7191 -3.0940 -1.1566 11 8 1.8300 -3.4658 -2.0147 12 6 1.5248 -4.0129 -3.2083 13 8 0.3621 -4.1742 -3.5233 14 6 2.5979 -4.4142 -4.1285 15 6 2.2965 -4.9538 -5.3071 16 6 3.3970 -5.3648 -6.2511 17 6 3.2962 -6.8672 -6.5325 18 6 4.3681 -7.2604 -7.5523 19 8 4.1964 -6.4894 -8.7432 20 6 4.3272 -5.0796 -8.5496 21 6 3.2537 -4.5988 -7.5698 22 6 1.7340 -3.4673 1.2254 23 6 0.4253 -2.6956 1.4122 24 1 -0.4850 0.8401 -0.0004 25 1 0.0975 -2.3574 -1.6656 26 1 0.1232 -3.9780 -0.9302 27 1 3.6310 -4.2704 -3.8487 28 1 1.2634 -5.0972 -5.5871 29 1 4.3649 -5.1421 -5.8018 30 1 2.3094 -7.0971 -6.9343 31 1 3.4517 -7.4231 -5.6079 32 1 4.2736 -8.3202 -7.7887 33 1 5.3561 -7.0678 -7.1340 34 1 5.3146 -4.8585 -8.1442 35 1 4.2032 -4.5684 -9.5042 36 1 2.2660 -4.7829 -7.9925 37 1 3.3782 -3.5316 -7.3864 38 1 1.6635 -4.5335 1.0101 39 1 2.5871 -3.1656 1.8331 40 1 0.4179 -1.8866 2.1425 41 1 -0.5064 -3.2537 1.3195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:36 Heat of formation + Delta-G solvation = -107.118551 kcal Electronic energy + Delta-G solvation = -21347.991212 eV Core-core repulsion = 18000.697721 eV Total energy + Delta-G solvation = -3347.293491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87749 -39.46620 -36.88214 -35.68547 -35.05255 -31.96744 -31.68757 -31.41869 -27.25528 -25.78076 -25.08874 -23.84294 -22.32183 -21.15003 -20.40745 -19.36267 -19.16992 -17.32647 -16.58184 -16.30318 -16.24680 -15.60691 -15.42563 -15.02691 -14.64612 -14.59251 -14.18834 -13.89723 -13.21797 -12.88451 -12.72958 -12.56437 -12.18767 -11.94375 -11.66143 -11.60490 -11.29883 -11.27698 -10.98897 -10.87290 -10.64554 -10.53792 -10.29710 -10.10376 -9.85707 -9.83810 -9.56272 -9.46591 -8.82556 -8.47367 -8.21992 -6.07672 -4.12961 1.30063 3.27731 3.33256 3.34985 3.38560 3.39809 3.57663 4.38092 4.41795 4.47886 4.50571 4.69092 4.91542 4.94857 5.09101 5.18210 5.22505 5.25099 5.36783 5.38793 5.42909 5.52962 5.54728 5.68805 5.78191 5.92382 5.98278 6.21162 6.30552 6.33090 6.37614 6.52491 6.67337 6.73190 6.87377 7.02477 7.23748 7.35802 7.46694 7.85580 8.35022 8.44708 8.88679 9.52850 11.01727 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.003277 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.807761 B = 8541.458881 C = 9214.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.333 6.333 12 C 0.484 3.516 13 O -0.527 6.527 14 C -0.173 4.173 15 C -0.068 4.068 16 C -0.066 4.066 17 C -0.149 4.149 18 C 0.061 3.939 19 O -0.385 6.385 20 C 0.061 3.939 21 C -0.150 4.150 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.261 0.739 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -11.582 -13.212 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.043 3.957 11 O -0.248 6.248 12 C 0.329 3.671 13 O -0.420 6.420 14 C -0.192 4.192 15 C -0.087 4.087 16 C -0.084 4.084 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.304 6.304 20 C -0.015 4.015 21 C -0.188 4.188 22 C -0.243 4.243 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.350 -11.550 -13.413 19.166 hybrid contribution 0.160 1.157 0.429 1.244 sum 7.511 -10.393 -12.984 18.248 Atomic orbital electron populations 1.70004 1.05915 1.26704 1.49171 1.25021 0.94866 0.99107 0.94496 0.86581 0.79967 0.83223 0.78193 1.20622 1.21144 1.19715 1.20389 0.93103 0.88352 1.50937 0.91874 1.18775 0.98990 0.94220 0.84377 1.22908 0.85424 0.96887 0.90512 1.86620 1.41136 1.70479 1.26539 1.21499 0.88531 0.74955 0.82076 1.90794 1.21804 1.52935 1.76474 1.22101 0.98820 1.03931 0.94385 1.23664 1.00429 0.91802 0.92771 1.20444 0.97715 0.95472 0.94783 1.22225 1.01072 0.95118 1.00276 1.22589 0.97311 0.95999 0.85660 1.87938 1.92870 1.17534 1.32018 1.22593 0.97466 0.81613 0.99874 1.22229 1.01009 1.00738 0.94787 1.23012 0.98563 0.95714 1.06976 1.22533 0.92285 1.01206 1.02153 0.92903 0.90633 0.94321 0.84582 0.85407 0.89798 0.90482 0.90296 0.88685 0.93005 0.92979 0.88640 0.90462 0.90176 0.91560 0.90046 0.89388 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.99 12.88 55.43 0.71 -24.28 16 2 C 0.07 1.87 5.38 -17.82 -0.10 1.78 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.49 -13.46 8.77 -34.44 -0.30 -13.77 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 9 C 0.04 0.93 1.62 -155.66 -0.25 0.67 16 10 C 0.12 2.81 5.30 37.16 0.20 3.01 16 11 O -0.33 -7.50 10.17 -40.75 -0.41 -7.91 16 12 C 0.48 9.57 7.91 34.26 0.27 9.84 16 13 O -0.53 -11.61 16.01 -19.29 -0.31 -11.92 16 14 C -0.17 -2.51 9.76 -37.85 -0.37 -2.88 16 15 C -0.07 -0.81 8.36 -36.10 -0.30 -1.12 16 16 C -0.07 -0.59 2.57 -91.58 -0.24 -0.83 16 17 C -0.15 -1.20 5.40 -26.59 -0.14 -1.34 16 18 C 0.06 0.46 6.84 37.20 0.25 0.71 16 19 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 20 C 0.06 0.47 6.84 37.20 0.25 0.73 16 21 C -0.15 -1.26 5.40 -26.59 -0.14 -1.40 16 22 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 23 C -0.14 -3.38 9.37 -26.69 -0.25 -3.63 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 26 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.14 1.69 7.87 -52.49 -0.41 1.28 16 28 H 0.13 1.65 7.49 -52.49 -0.39 1.26 16 29 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -30.99 347.42 -8.23 -39.22 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.67 Total: 0.61 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.38 Total: -12.99 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.71 Total: -24.28 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.10 Total: -23.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.99 -8.23 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.896 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds