Wall clock time and date at job start Tue Mar 31 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47291 * 269.99801 * 3 2 1 5 5 H 1.48501 * 109.47119 * 29.99938 * 3 2 1 6 6 H 1.48503 * 109.47117 * 149.99434 * 3 2 1 7 7 C 1.37877 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99738 * 173.70419 * 7 2 1 9 9 C 1.50700 * 120.00273 * 353.70292 * 7 2 1 10 10 C 1.53001 * 115.54848 * 86.10666 * 9 7 2 11 11 O 1.45210 * 109.47062 * 65.10659 * 10 9 7 12 12 C 1.34795 * 116.99973 * 179.97438 * 11 10 9 13 13 O 1.21538 * 119.99806 * 0.02562 * 12 11 10 14 14 C 1.46950 * 119.99933 * 180.02562 * 12 11 10 15 15 C 1.33085 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.50700 * 119.99624 * 179.97438 * 15 14 12 17 17 C 1.53183 * 109.54416 * 119.99716 * 16 15 14 18 18 C 1.53087 * 109.16329 * 176.84766 * 17 16 15 19 19 O 1.42906 * 109.41661 * 302.39165 * 18 17 16 20 20 C 1.42906 * 114.09843 * 61.15900 * 19 18 17 21 21 C 1.53091 * 109.41292 * 298.84276 * 20 19 18 22 22 C 1.52992 * 117.49994 * 231.77828 * 9 7 2 23 23 C 1.53002 * 117.49820 * 300.44016 * 9 7 2 24 24 H 0.97002 * 119.99802 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47288 * 305.10842 * 10 9 7 26 26 H 1.08992 * 109.47266 * 185.10849 * 10 9 7 27 27 H 1.07994 * 120.00056 * 359.97438 * 14 12 11 28 28 H 1.07994 * 120.00192 * 359.97438 * 15 14 12 29 29 H 1.09005 * 109.54436 * 359.82166 * 16 15 14 30 30 H 1.08999 * 109.52258 * 56.94080 * 17 16 15 31 31 H 1.09000 * 109.57092 * 296.78451 * 17 16 15 32 32 H 1.08996 * 109.48097 * 182.41203 * 18 17 16 33 33 H 1.09000 * 109.48713 * 62.37016 * 18 17 16 34 34 H 1.08999 * 109.47791 * 58.82454 * 20 19 18 35 35 H 1.08995 * 109.48348 * 178.86424 * 20 19 18 36 36 H 1.08999 * 109.52437 * 297.70265 * 21 20 19 37 37 H 1.08997 * 109.57733 * 177.54301 * 21 20 19 38 38 H 1.09008 * 117.50201 * 214.99968 * 22 9 7 39 39 H 1.08995 * 117.50134 * 0.02562 * 22 9 7 40 40 H 1.08990 * 117.50201 * 359.97353 * 23 9 7 41 41 H 1.09005 * 117.49622 * 144.96980 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1020 9 6 1.2578 -2.4952 0.1443 10 6 0.7191 -3.0940 -1.1566 11 8 1.8300 -3.4658 -2.0147 12 6 1.5248 -4.0129 -3.2083 13 8 0.3621 -4.1742 -3.5233 14 6 2.5979 -4.4142 -4.1285 15 6 2.2965 -4.9538 -5.3071 16 6 3.3970 -5.3648 -6.2511 17 6 3.2962 -6.8672 -6.5325 18 6 4.3681 -7.2604 -7.5523 19 8 4.1964 -6.4894 -8.7432 20 6 4.3272 -5.0796 -8.5496 21 6 3.2537 -4.5988 -7.5698 22 6 1.7340 -3.4673 1.2254 23 6 0.4253 -2.6956 1.4122 24 1 -0.4850 0.8401 -0.0004 25 1 0.0975 -2.3574 -1.6656 26 1 0.1232 -3.9780 -0.9302 27 1 3.6310 -4.2704 -3.8487 28 1 1.2634 -5.0972 -5.5871 29 1 4.3649 -5.1421 -5.8018 30 1 2.3094 -7.0971 -6.9343 31 1 3.4517 -7.4231 -5.6079 32 1 4.2736 -8.3202 -7.7887 33 1 5.3561 -7.0678 -7.1340 34 1 5.3146 -4.8585 -8.1442 35 1 4.2032 -4.5684 -9.5042 36 1 2.2660 -4.7829 -7.9925 37 1 3.3782 -3.5316 -7.3864 38 1 1.6635 -4.5335 1.0101 39 1 2.5871 -3.1656 1.8331 40 1 0.4179 -1.8866 2.1425 41 1 -0.5064 -3.2537 1.3195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:35 Heat of formation + Delta-G solvation = -123.762735 kcal Electronic energy + Delta-G solvation = -21348.712958 eV Core-core repulsion = 18000.697721 eV Total energy + Delta-G solvation = -3348.015237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31976 -40.33324 -38.65966 -37.07620 -36.32849 -34.03943 -32.68914 -32.01818 -28.95980 -27.48590 -26.46650 -24.45792 -23.54531 -22.93529 -21.22058 -21.16909 -20.51865 -18.75306 -18.38260 -17.34799 -17.24847 -16.91098 -16.90371 -16.55010 -15.76106 -15.61429 -15.47428 -14.98096 -14.82366 -14.11295 -14.03036 -13.75184 -13.57862 -13.30642 -13.17332 -12.91616 -12.84089 -12.38925 -12.27703 -12.11012 -12.08695 -11.95925 -11.79983 -11.69809 -11.47536 -11.17894 -10.80185 -10.52594 -10.51073 -10.48668 -10.10751 -8.15432 -6.27075 0.07805 1.40944 1.42157 1.52819 1.82935 1.95973 2.41421 3.00467 3.13315 3.36657 3.58786 3.73203 3.85825 4.00209 4.07147 4.07847 4.11962 4.34165 4.35937 4.40090 4.44950 4.55483 4.63375 4.70979 4.75255 4.77880 4.83460 4.89712 4.94779 5.02857 5.13708 5.16180 5.17334 5.31995 5.42004 5.43866 5.56423 5.66210 5.73118 6.29698 6.33840 6.78122 6.80075 7.41823 8.93530 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.003277 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.807761 B = 8541.458881 C = 9214.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.129 3.871 11 O -0.344 6.344 12 C 0.478 3.522 13 O -0.560 6.560 14 C -0.196 4.196 15 C -0.030 4.030 16 C -0.064 4.064 17 C -0.147 4.147 18 C 0.059 3.941 19 O -0.405 6.405 20 C 0.061 3.939 21 C -0.149 4.149 22 C -0.177 4.177 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.855 -12.363 -13.992 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.002 3.998 10 C 0.055 3.945 11 O -0.260 6.260 12 C 0.326 3.674 13 O -0.454 6.454 14 C -0.214 4.214 15 C -0.049 4.049 16 C -0.083 4.083 17 C -0.185 4.185 18 C -0.017 4.017 19 O -0.324 6.324 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.214 4.214 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.178 0.822 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.321 -12.345 -14.195 20.995 hybrid contribution -0.465 1.317 0.562 1.506 sum 8.856 -11.028 -13.633 19.644 Atomic orbital electron populations 1.70115 1.07210 1.27367 1.50086 1.25759 0.95640 1.02286 0.94194 0.85611 0.78987 0.79236 0.78183 1.20406 1.20751 1.18836 1.20649 0.92995 0.89831 1.50921 0.92588 1.18879 1.00692 0.94851 0.85357 1.22517 0.85595 0.96117 0.90293 1.86617 1.40448 1.71182 1.27732 1.22470 0.89564 0.73767 0.81579 1.90770 1.23455 1.54429 1.76797 1.22061 0.98183 1.06857 0.94330 1.23917 1.01022 0.88085 0.91871 1.20544 0.97073 0.96350 0.94287 1.22220 1.01125 0.94171 1.00965 1.22712 0.97560 0.96497 0.84922 1.87919 1.93003 1.18371 1.33135 1.22682 0.97643 0.81012 1.00231 1.22229 1.01104 1.00864 0.94518 1.23023 0.97654 0.96405 1.04322 1.22473 0.93636 1.01300 1.00900 0.92978 0.94363 0.93437 0.82195 0.86574 0.88126 0.91217 0.89412 0.87492 0.91711 0.91717 0.87662 0.91230 0.89864 0.89114 0.89451 0.91057 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.60 12.88 21.45 0.28 -52.32 16 2 C 0.02 1.19 5.38 84.65 0.46 1.64 16 3 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.51 -28.06 8.77 25.60 0.22 -27.83 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.13 1.62 -52.93 -0.09 0.05 16 10 C 0.13 6.37 5.30 71.98 0.38 6.75 16 11 O -0.34 -15.68 10.17 -57.07 -0.58 -16.26 16 12 C 0.48 19.06 7.91 70.10 0.55 19.62 16 13 O -0.56 -25.24 16.01 19.71 0.32 -24.93 16 14 C -0.20 -5.43 9.76 23.40 0.23 -5.20 16 15 C -0.03 -0.68 8.36 24.53 0.21 -0.48 16 16 C -0.06 -1.00 2.57 -11.42 -0.03 -1.03 16 17 C -0.15 -2.01 5.40 30.68 0.17 -1.84 16 18 C 0.06 0.73 6.84 72.01 0.49 1.22 16 19 O -0.41 -6.77 10.77 -148.98 -1.60 -8.38 16 20 C 0.06 0.79 6.84 72.01 0.49 1.28 16 21 C -0.15 -2.20 5.40 30.69 0.17 -2.04 16 22 C -0.18 -7.54 9.96 30.62 0.30 -7.24 16 23 C -0.15 -6.80 9.37 30.62 0.29 -6.52 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 27 H 0.16 3.63 7.87 -2.91 -0.02 3.61 16 28 H 0.12 2.93 7.49 -2.91 -0.02 2.91 16 29 H 0.10 1.31 7.82 -2.38 -0.02 1.29 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 39 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -67.32 347.42 5.27 -62.05 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.99 Total: 15.95 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 3.84 Total: -21.59 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.28 Total: -52.32 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.87 Total: -49.57 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.32 5.27 -62.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.715 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds