Wall clock time and date at job start Tue Mar 31 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99888 * 2 1 4 4 H 1.48508 * 109.46965 * 240.00465 * 3 2 1 5 5 H 1.48501 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47307 * 120.00260 * 3 2 1 7 7 C 1.37872 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00120 * 184.64363 * 7 2 1 9 9 C 1.50705 * 120.00407 * 4.63554 * 7 2 1 10 10 C 1.53003 * 115.54313 * 84.59667 * 9 7 2 11 11 O 1.45200 * 109.47411 * 53.49742 * 10 9 7 12 12 C 1.34795 * 116.99824 * 179.97438 * 11 10 9 13 13 O 1.21537 * 120.00362 * 0.02562 * 12 11 10 14 14 C 1.46952 * 119.99665 * 179.97438 * 12 11 10 15 15 C 1.33088 * 119.99759 * 186.40779 * 14 12 11 16 16 C 1.50699 * 119.99868 * 20.84052 * 15 14 12 17 17 C 1.53174 * 109.54302 * 256.31983 * 16 15 14 18 18 C 1.53088 * 109.16650 * 183.15563 * 17 16 15 19 19 O 1.42901 * 109.41652 * 57.60325 * 18 17 16 20 20 C 1.42894 * 114.10250 * 298.84926 * 19 18 17 21 21 C 1.53093 * 109.41737 * 61.15168 * 20 19 18 22 22 C 1.52994 * 117.49887 * 230.26606 * 9 7 2 23 23 C 1.52992 * 117.50028 * 298.92828 * 9 7 2 24 24 H 0.96998 * 119.99949 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47000 * 293.49267 * 10 9 7 26 26 H 1.09008 * 109.46452 * 173.49785 * 10 9 7 27 27 H 1.08001 * 120.00129 * 6.13959 * 14 12 11 28 28 H 1.08004 * 120.00044 * 200.83221 * 15 14 12 29 29 H 1.08997 * 109.54693 * 16.58638 * 16 15 14 30 30 H 1.09002 * 109.52392 * 303.05867 * 17 16 15 31 31 H 1.08999 * 109.52479 * 63.24761 * 17 16 15 32 32 H 1.09010 * 109.47966 * 297.62723 * 18 17 16 33 33 H 1.08997 * 109.48394 * 177.59642 * 18 17 16 34 34 H 1.09005 * 109.48143 * 301.17435 * 20 19 18 35 35 H 1.09003 * 109.48529 * 181.13673 * 20 19 18 36 36 H 1.08995 * 109.52436 * 182.49050 * 21 20 19 37 37 H 1.09003 * 109.56793 * 62.32975 * 21 20 19 38 38 H 1.09004 * 117.49724 * 215.00005 * 22 9 7 39 39 H 1.08998 * 117.50060 * 0.02562 * 22 9 7 40 40 H 1.09002 * 117.49593 * 359.97438 * 23 9 7 41 41 H 1.08996 * 117.50158 * 144.97114 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0819 -1.1957 0.0752 9 6 1.2547 -2.4970 -0.1066 10 6 0.9103 -2.9462 -1.5281 11 8 2.1172 -2.9666 -2.3351 12 6 1.9861 -3.3437 -3.6226 13 8 0.8929 -3.6467 -4.0588 14 6 3.1648 -3.3874 -4.4990 15 6 3.0190 -3.6351 -5.7984 16 6 1.6856 -3.4096 -6.4635 17 6 0.9939 -4.7566 -6.6942 18 6 -0.3226 -4.5243 -7.4403 19 8 -0.0578 -3.8509 -8.6726 20 6 0.5456 -2.5650 -8.5169 21 6 1.8970 -2.7187 -7.8141 22 6 1.5803 -3.5849 0.9188 23 6 0.2525 -2.8276 1.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.1928 -2.2515 -1.9648 26 1 0.4762 -3.9457 -1.4981 27 1 4.1490 -3.2142 -4.0894 28 1 3.8563 -3.9976 -6.3764 29 1 1.0619 -2.7823 -5.8267 30 1 1.6408 -5.4012 -7.2893 31 1 0.7897 -5.2305 -5.7341 32 1 -0.9849 -3.9130 -6.8271 33 1 -0.7986 -5.4832 -7.6449 34 1 -0.1052 -1.9281 -7.9178 35 1 0.6952 -2.1125 -9.4973 36 1 2.3387 -1.7350 -7.6549 37 1 2.5631 -3.3215 -8.4314 38 1 1.5489 -4.6207 0.5807 39 1 2.3364 -3.3580 1.6703 40 1 0.1358 -2.1028 1.8069 41 1 -0.6524 -3.3648 0.7173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:38 Heat of formation + Delta-G solvation = -96.053611 kcal Electronic energy + Delta-G solvation = -22147.707617 eV Core-core repulsion = 18800.893938 eV Total energy + Delta-G solvation = -3346.813679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05188 -39.11666 -36.93412 -35.62319 -34.66738 -31.95339 -31.60698 -31.11539 -27.19244 -25.56790 -25.00683 -23.57785 -22.49087 -21.12967 -20.34574 -19.35941 -18.98849 -17.22570 -16.55080 -16.05633 -16.00984 -15.51887 -15.04090 -14.86322 -14.59639 -14.45335 -13.97585 -13.71532 -13.43801 -12.97362 -12.52746 -12.34182 -12.23633 -11.87425 -11.61821 -11.42831 -11.21621 -10.96685 -10.95511 -10.88225 -10.54722 -10.34204 -10.23758 -9.92574 -9.73194 -9.61749 -9.47807 -9.11875 -8.94924 -8.43901 -8.17488 -6.06108 -4.11464 1.25621 3.29733 3.34061 3.34486 3.37204 3.46845 3.82517 4.39074 4.58489 4.72941 4.84029 4.98108 5.10296 5.19744 5.23142 5.29324 5.35337 5.48706 5.53457 5.59819 5.63285 5.78408 5.81616 5.94042 5.96921 6.11758 6.19044 6.22358 6.25326 6.30918 6.49196 6.50627 6.69688 6.76509 7.03772 7.13856 7.20673 7.36082 7.51701 7.86297 8.34649 8.47992 8.89262 9.53855 11.02866 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.004259 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.556291 B = 6572.628310 C = 7082.439195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.118 3.882 11 O -0.328 6.328 12 C 0.480 3.520 13 O -0.521 6.521 14 C -0.185 4.185 15 C -0.060 4.060 16 C -0.078 4.078 17 C -0.136 4.136 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.150 4.150 22 C -0.209 4.209 23 C -0.140 4.140 24 H 0.261 0.739 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -7.000 -13.476 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.033 3.967 10 C 0.044 3.956 11 O -0.243 6.243 12 C 0.327 3.673 13 O -0.414 6.414 14 C -0.204 4.204 15 C -0.078 4.078 16 C -0.096 4.096 17 C -0.174 4.174 18 C -0.015 4.015 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.187 4.187 22 C -0.246 4.246 23 C -0.178 4.178 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.898 -7.017 -13.710 15.672 hybrid contribution 0.463 1.067 0.380 1.223 sum 3.361 -5.950 -13.330 14.980 Atomic orbital electron populations 1.69994 1.05866 1.26691 1.49470 1.24996 0.94860 0.99022 0.94568 0.86660 0.79651 0.82966 0.78763 1.20137 1.21304 1.20140 1.20306 0.92759 0.88294 1.50913 0.92013 1.18781 0.99495 0.93841 0.84583 1.22780 0.83138 0.98329 0.91313 1.86660 1.40123 1.76690 1.20827 1.21581 0.88759 0.74251 0.82705 1.90740 1.28527 1.46421 1.75696 1.22160 0.97911 1.06593 0.93762 1.23710 0.98743 0.91012 0.94348 1.20702 0.94681 0.98216 0.95967 1.22044 0.97014 0.96727 1.01572 1.22579 0.96197 0.97258 0.85440 1.87882 1.81136 1.31457 1.30217 1.22531 0.92918 0.85228 1.00813 1.22266 0.98568 1.01541 0.96352 1.23059 1.00317 0.95587 1.05607 1.22509 0.90865 1.01432 1.02951 0.92927 0.91221 0.94249 0.84116 0.85153 0.87977 0.91823 0.89646 0.92738 0.89070 0.93036 0.88990 0.90780 0.91075 0.91648 0.90108 0.89149 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 12.68 55.43 0.70 -24.18 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.21 8.54 -34.44 -0.29 -13.51 16 8 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 9 C 0.03 0.83 1.76 -155.66 -0.27 0.56 16 10 C 0.12 2.77 5.38 37.16 0.20 2.97 16 11 O -0.33 -7.27 9.94 -40.75 -0.41 -7.67 16 12 C 0.48 9.07 7.61 34.26 0.26 9.33 16 13 O -0.52 -10.28 12.06 -19.29 -0.23 -10.51 16 14 C -0.19 -2.64 10.10 -37.85 -0.38 -3.02 16 15 C -0.06 -0.70 8.79 -36.10 -0.32 -1.02 16 16 C -0.08 -0.98 1.69 -91.59 -0.15 -1.13 16 17 C -0.14 -1.66 5.11 -26.60 -0.14 -1.80 16 18 C 0.06 0.74 6.84 37.20 0.25 1.00 16 19 O -0.39 -4.90 10.76 -35.23 -0.38 -5.27 16 20 C 0.06 0.67 6.84 37.21 0.25 0.92 16 21 C -0.15 -1.55 5.40 -26.59 -0.14 -1.70 16 22 C -0.21 -4.55 9.92 -26.70 -0.26 -4.82 16 23 C -0.14 -3.27 9.20 -26.70 -0.25 -3.51 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 26 H 0.04 0.86 8.08 -51.92 -0.42 0.44 16 27 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.10 1.61 5.85 -51.93 -0.30 1.31 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.18 6.87 -51.93 -0.36 0.83 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.09 2.24 8.14 -51.93 -0.42 1.82 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -29.73 339.66 -8.10 -37.83 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.54 Total: 2.59 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.34 Total: -13.97 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.70 Total: -24.18 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.02 Total: -23.46 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.73 -8.10 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.227 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds