Wall clock time and date at job start Tue Mar 31 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99888 * 2 1 4 4 H 1.48508 * 109.46965 * 240.00465 * 3 2 1 5 5 H 1.48501 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47307 * 120.00260 * 3 2 1 7 7 C 1.37872 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00120 * 184.64363 * 7 2 1 9 9 C 1.50705 * 120.00407 * 4.63554 * 7 2 1 10 10 C 1.53003 * 115.54313 * 84.59667 * 9 7 2 11 11 O 1.45200 * 109.47411 * 53.49742 * 10 9 7 12 12 C 1.34795 * 116.99824 * 179.97438 * 11 10 9 13 13 O 1.21537 * 120.00362 * 0.02562 * 12 11 10 14 14 C 1.46952 * 119.99665 * 179.97438 * 12 11 10 15 15 C 1.33088 * 119.99759 * 186.40779 * 14 12 11 16 16 C 1.50699 * 119.99868 * 20.84052 * 15 14 12 17 17 C 1.53174 * 109.54302 * 256.31983 * 16 15 14 18 18 C 1.53088 * 109.16650 * 183.15563 * 17 16 15 19 19 O 1.42901 * 109.41652 * 57.60325 * 18 17 16 20 20 C 1.42894 * 114.10250 * 298.84926 * 19 18 17 21 21 C 1.53093 * 109.41737 * 61.15168 * 20 19 18 22 22 C 1.52994 * 117.49887 * 230.26606 * 9 7 2 23 23 C 1.52992 * 117.50028 * 298.92828 * 9 7 2 24 24 H 0.96998 * 119.99949 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47000 * 293.49267 * 10 9 7 26 26 H 1.09008 * 109.46452 * 173.49785 * 10 9 7 27 27 H 1.08001 * 120.00129 * 6.13959 * 14 12 11 28 28 H 1.08004 * 120.00044 * 200.83221 * 15 14 12 29 29 H 1.08997 * 109.54693 * 16.58638 * 16 15 14 30 30 H 1.09002 * 109.52392 * 303.05867 * 17 16 15 31 31 H 1.08999 * 109.52479 * 63.24761 * 17 16 15 32 32 H 1.09010 * 109.47966 * 297.62723 * 18 17 16 33 33 H 1.08997 * 109.48394 * 177.59642 * 18 17 16 34 34 H 1.09005 * 109.48143 * 301.17435 * 20 19 18 35 35 H 1.09003 * 109.48529 * 181.13673 * 20 19 18 36 36 H 1.08995 * 109.52436 * 182.49050 * 21 20 19 37 37 H 1.09003 * 109.56793 * 62.32975 * 21 20 19 38 38 H 1.09004 * 117.49724 * 215.00005 * 22 9 7 39 39 H 1.08998 * 117.50060 * 0.02562 * 22 9 7 40 40 H 1.09002 * 117.49593 * 359.97438 * 23 9 7 41 41 H 1.08996 * 117.50158 * 144.97114 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0819 -1.1957 0.0752 9 6 1.2547 -2.4970 -0.1066 10 6 0.9103 -2.9462 -1.5281 11 8 2.1172 -2.9666 -2.3351 12 6 1.9861 -3.3437 -3.6226 13 8 0.8929 -3.6467 -4.0588 14 6 3.1648 -3.3874 -4.4990 15 6 3.0190 -3.6351 -5.7984 16 6 1.6856 -3.4096 -6.4635 17 6 0.9939 -4.7566 -6.6942 18 6 -0.3226 -4.5243 -7.4403 19 8 -0.0578 -3.8509 -8.6726 20 6 0.5456 -2.5650 -8.5169 21 6 1.8970 -2.7187 -7.8141 22 6 1.5803 -3.5849 0.9188 23 6 0.2525 -2.8276 1.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.1928 -2.2515 -1.9648 26 1 0.4762 -3.9457 -1.4981 27 1 4.1490 -3.2142 -4.0894 28 1 3.8563 -3.9976 -6.3764 29 1 1.0619 -2.7823 -5.8267 30 1 1.6408 -5.4012 -7.2893 31 1 0.7897 -5.2305 -5.7341 32 1 -0.9849 -3.9130 -6.8271 33 1 -0.7986 -5.4832 -7.6449 34 1 -0.1052 -1.9281 -7.9178 35 1 0.6952 -2.1125 -9.4973 36 1 2.3387 -1.7350 -7.6549 37 1 2.5631 -3.3215 -8.4314 38 1 1.5489 -4.6207 0.5807 39 1 2.3364 -3.3580 1.6703 40 1 0.1358 -2.1028 1.8069 41 1 -0.6524 -3.3648 0.7173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:37 Heat of formation + Delta-G solvation = -111.915920 kcal Electronic energy + Delta-G solvation = -22148.395459 eV Core-core repulsion = 18800.893938 eV Total energy + Delta-G solvation = -3347.501521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42467 -40.23226 -38.64179 -37.14602 -35.92755 -34.02206 -32.65403 -32.02305 -28.90792 -27.42675 -26.31723 -24.49203 -23.78097 -22.94284 -21.31194 -21.22078 -20.37214 -18.69594 -18.17006 -17.38458 -17.19088 -16.94617 -16.59305 -16.38665 -15.88881 -15.60343 -15.43133 -14.87054 -14.75227 -14.33904 -14.06862 -13.78282 -13.57301 -13.32440 -13.07972 -12.89103 -12.80933 -12.49032 -12.35361 -12.24651 -12.08303 -11.89499 -11.62914 -11.50746 -11.24582 -11.02060 -10.92939 -10.59017 -10.45984 -10.15826 -10.05866 -8.13686 -6.24762 0.11561 1.40747 1.42358 1.49618 1.98019 1.99942 2.41718 2.93066 3.15104 3.41557 3.60640 3.80428 3.90112 3.94493 4.08704 4.14562 4.31205 4.32849 4.36667 4.43592 4.49217 4.58255 4.64006 4.67916 4.76686 4.82489 4.85717 4.94220 4.95486 5.01349 5.14793 5.17159 5.20609 5.25732 5.40315 5.52809 5.61063 5.73271 5.81394 6.21739 6.35139 6.79146 6.92355 7.43247 8.94663 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.004259 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.556291 B = 6572.628310 C = 7082.439195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.132 3.868 11 O -0.347 6.347 12 C 0.470 3.530 13 O -0.539 6.539 14 C -0.213 4.213 15 C -0.021 4.021 16 C -0.087 4.087 17 C -0.131 4.131 18 C 0.062 3.938 19 O -0.397 6.397 20 C 0.055 3.945 21 C -0.142 4.142 22 C -0.181 4.181 23 C -0.142 4.142 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.162 0.838 28 H 0.179 0.821 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.038 0.962 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 -7.661 -15.223 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.072 0.928 9 C -0.001 4.001 10 C 0.058 3.942 11 O -0.263 6.263 12 C 0.318 3.682 13 O -0.433 6.433 14 C -0.231 4.231 15 C -0.039 4.039 16 C -0.105 4.105 17 C -0.168 4.168 18 C -0.015 4.015 19 O -0.316 6.316 20 C -0.022 4.022 21 C -0.179 4.179 22 C -0.218 4.218 23 C -0.180 4.180 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.179 0.821 28 H 0.196 0.804 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.916 -7.686 -15.460 17.951 hybrid contribution -0.202 1.230 0.815 1.489 sum 4.714 -6.457 -14.645 16.685 Atomic orbital electron populations 1.70105 1.07103 1.27243 1.50473 1.25708 0.95623 1.02106 0.94360 0.85728 0.78526 0.79156 0.78986 1.19817 1.21043 1.19219 1.20555 0.92616 0.89796 1.50711 0.92786 1.18916 1.00905 0.94506 0.85751 1.22377 0.83231 0.97764 0.90840 1.86651 1.39275 1.77759 1.22576 1.22533 0.90234 0.73444 0.81966 1.90737 1.29692 1.47302 1.75531 1.22216 0.96690 1.10185 0.94057 1.24166 0.99379 0.86907 0.93473 1.20736 0.94826 0.98083 0.96895 1.21974 0.97463 0.96588 1.00800 1.22585 0.96002 0.97669 0.85240 1.87871 1.81410 1.32142 1.30184 1.22720 0.92907 0.84461 1.02090 1.22230 0.98669 1.02150 0.94852 1.23065 0.98951 0.96056 1.03718 1.22416 0.92072 1.01594 1.01877 0.93096 0.94720 0.93123 0.82076 0.80381 0.91844 0.89616 0.91772 0.94766 0.87440 0.94409 0.86525 0.89853 0.88798 0.89054 0.89727 0.91189 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 12.68 21.45 0.27 -52.38 16 2 C 0.02 1.21 5.43 84.65 0.46 1.67 16 3 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.50 -27.63 8.54 25.60 0.22 -27.41 16 8 H 0.05 2.99 7.82 -2.91 -0.02 2.96 16 9 C 0.00 -0.02 1.76 -52.93 -0.09 -0.11 16 10 C 0.13 6.38 5.38 71.98 0.39 6.77 16 11 O -0.35 -15.69 9.94 -57.07 -0.57 -16.26 16 12 C 0.47 18.00 7.61 70.10 0.53 18.53 16 13 O -0.54 -22.04 12.06 19.72 0.24 -21.80 16 14 C -0.21 -5.73 10.10 23.40 0.24 -5.50 16 15 C -0.02 -0.44 8.79 24.53 0.22 -0.22 16 16 C -0.09 -2.07 1.69 -11.42 -0.02 -2.09 16 17 C -0.13 -3.02 5.11 30.68 0.16 -2.86 16 18 C 0.06 1.44 6.84 72.01 0.49 1.94 16 19 O -0.40 -9.39 10.76 -148.98 -1.60 -11.00 16 20 C 0.05 1.08 6.84 72.01 0.49 1.57 16 21 C -0.14 -2.54 5.40 30.69 0.17 -2.37 16 22 C -0.18 -7.74 9.92 30.62 0.30 -7.44 16 23 C -0.14 -6.69 9.20 30.62 0.28 -6.41 16 24 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 2.26 8.08 -2.38 -0.02 2.24 16 27 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.06 2.04 5.85 -2.39 -0.01 2.03 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.76 6.87 -2.39 -0.02 1.75 16 32 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.07 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -66.13 339.66 5.20 -60.93 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.00 Total: 18.74 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.83 Total: -23.92 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.27 Total: -52.38 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.93 Total: -49.05 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.13 5.20 -60.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.982 kcal (2) G-P(sol) polarization free energy of solvation -66.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds