Wall clock time and date at job start Tue Mar 31 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99578 * 2 1 4 4 H 1.48496 * 109.47489 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47020 * 120.00417 * 3 2 1 6 6 H 1.48504 * 109.46591 * 239.99463 * 3 2 1 7 7 C 1.38808 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99921 * 206.94882 * 7 2 1 9 9 N 1.36938 * 120.00250 * 26.94331 * 7 2 1 10 10 C 1.46500 * 119.99559 * 35.58799 * 9 7 2 11 11 N 1.46496 * 109.47194 * 90.00283 * 10 9 7 12 12 C 1.47114 * 124.34932 * 89.99723 * 11 10 9 13 13 C 1.53045 * 105.15596 * 195.67045 * 12 11 10 14 14 C 1.53415 * 111.84529 * 215.79906 * 13 12 11 15 15 C 1.55314 * 101.70643 * 217.44671 * 14 13 12 16 16 O 1.44518 * 103.69066 * 35.85848 * 15 14 13 17 17 C 1.44165 * 107.04541 * 320.82652 * 16 15 14 18 18 C 1.53199 * 103.34437 * 336.14097 * 13 12 11 19 19 C 1.34592 * 124.34647 * 269.69488 * 11 10 9 20 20 O 1.21284 * 124.94274 * 359.66722 * 19 11 10 21 21 C 1.46492 * 120.00126 * 215.59229 * 9 7 2 22 22 C 1.52998 * 117.50348 * 8.69191 * 21 9 7 23 23 C 1.53003 * 117.49868 * 300.03311 * 21 9 7 24 24 H 0.97000 * 119.99890 * 185.55339 * 1 2 3 25 25 H 1.09006 * 109.46671 * 209.99932 * 10 9 7 26 26 H 1.09000 * 109.47040 * 329.99616 * 10 9 7 27 27 H 1.09000 * 110.30351 * 314.58757 * 12 11 10 28 28 H 1.08998 * 110.30854 * 76.75046 * 12 11 10 29 29 H 1.09000 * 110.97520 * 335.55118 * 14 13 12 30 30 H 1.08999 * 110.97624 * 99.34203 * 14 13 12 31 31 H 1.08993 * 110.58178 * 277.30548 * 15 14 13 32 32 H 1.09003 * 110.70685 * 154.47293 * 15 14 13 33 33 H 1.08996 * 110.00527 * 266.81444 * 17 16 15 34 34 H 1.08999 * 110.03924 * 145.47724 * 17 16 15 35 35 H 1.09002 * 110.54451 * 141.90358 * 18 13 12 36 36 H 1.08992 * 110.54791 * 264.71091 * 18 13 12 37 37 H 1.09000 * 115.55260 * 154.36744 * 21 9 7 38 38 H 1.09004 * 117.49920 * 0.02562 * 22 21 9 39 39 H 1.08998 * 117.50105 * 145.01931 * 22 21 9 40 40 H 1.09003 * 117.50260 * 214.98662 * 23 21 9 41 41 H 1.08998 * 117.49748 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0024 -1.2526 0.4245 9 7 1.4372 -2.3239 -0.5363 10 6 0.5753 -2.2132 -1.7157 11 7 1.3871 -2.3459 -2.9280 12 6 1.6725 -3.6230 -3.6001 13 6 2.8433 -3.3273 -4.5404 14 6 2.7365 -4.1175 -5.8511 15 6 4.2230 -4.4729 -6.1268 16 8 4.7697 -4.7038 -4.8091 17 6 4.1877 -3.7190 -3.9317 18 6 2.7339 -1.8178 -4.7775 19 6 1.9627 -1.3144 -3.5731 20 8 1.8783 -0.1517 -3.2386 21 6 1.6859 -3.6346 0.0688 22 6 2.4224 -3.6656 1.4095 23 6 3.1356 -4.1194 0.1334 24 1 -0.4850 -0.8361 0.0813 25 1 -0.1752 -3.0034 -1.6927 26 1 0.0804 -1.2420 -1.7142 27 1 1.9564 -4.3800 -2.8691 28 1 0.8039 -3.9531 -4.1698 29 1 2.1383 -5.0186 -5.7157 30 1 2.3291 -3.4966 -6.6489 31 1 4.7323 -3.6406 -6.6124 32 1 4.2973 -5.3739 -6.7358 33 1 4.8370 -2.8458 -3.8684 34 1 4.0380 -4.1447 -2.9395 35 1 3.7242 -1.3641 -4.8176 36 1 2.1811 -1.6136 -5.6943 37 1 0.9117 -4.3838 -0.0975 38 1 2.7216 -2.7107 1.8416 39 1 2.1330 -4.4352 2.1251 40 1 3.3153 -5.1874 0.0099 41 1 3.9043 -3.4632 -0.2747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756851637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:31 Heat of formation + Delta-G solvation = -18.978482 kcal Electronic energy + Delta-G solvation = -23724.163214 eV Core-core repulsion = 20412.984514 eV Total energy + Delta-G solvation = -3311.178700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71502 -38.40428 -37.07078 -35.47728 -33.96315 -32.30230 -30.28197 -29.37048 -27.86902 -26.03179 -24.69836 -23.07482 -22.60709 -21.52533 -20.22715 -19.73070 -18.96054 -17.07094 -16.44231 -16.17574 -15.71073 -15.45647 -15.16159 -14.84619 -14.21938 -14.15607 -13.52910 -13.48963 -13.34248 -13.02203 -12.45539 -12.32380 -12.21211 -11.92799 -11.69952 -11.54409 -11.33178 -10.92956 -10.83491 -10.70084 -10.62915 -10.43531 -10.04092 -9.93401 -9.71070 -9.55340 -9.39012 -8.95457 -8.28252 -7.98572 -6.91360 -6.10255 -3.41364 3.33415 3.56733 3.71166 3.81529 3.85452 3.87297 4.29987 4.37757 4.60717 4.70371 4.81738 4.88969 5.03017 5.09180 5.10483 5.45985 5.50400 5.52954 5.62807 5.66243 5.70486 5.72963 5.74874 5.78066 5.90686 5.94329 5.97438 6.00787 6.04967 6.11281 6.33509 6.44400 6.78302 6.81164 6.87387 7.04424 7.38806 7.96011 8.09830 8.53012 9.00242 9.05295 9.75271 10.12118 11.12903 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.007138 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.209102 B = 3921.689608 C = 4648.144337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.014 3.986 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.051 0.949 9 N -0.547 5.547 10 C 0.351 3.649 11 N -0.618 5.618 12 C 0.118 3.882 13 C -0.106 4.106 14 C -0.138 4.138 15 C 0.047 3.953 16 O -0.381 6.381 17 C 0.065 3.935 18 C -0.145 4.145 19 C 0.512 3.488 20 O -0.510 6.510 21 C 0.116 3.884 22 C -0.187 4.187 23 C -0.222 4.222 24 H 0.266 0.734 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -10.593 -10.985 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.191 4.191 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.209 1.209 7 C -0.489 4.489 8 H 0.069 0.931 9 N -0.266 5.266 10 C 0.144 3.856 11 N -0.357 5.357 12 C -0.006 4.006 13 C -0.106 4.106 14 C -0.176 4.176 15 C -0.030 4.030 16 O -0.300 6.300 17 C -0.011 4.011 18 C -0.186 4.186 19 C 0.297 3.703 20 O -0.384 6.384 21 C 0.007 3.993 22 C -0.225 4.225 23 C -0.262 4.262 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.713 -8.406 -10.681 14.090 hybrid contribution 0.305 -1.734 0.046 1.761 sum 4.018 -10.140 -10.634 15.233 Atomic orbital electron populations 1.70853 1.07058 1.29946 1.45661 1.25784 0.95988 1.01542 0.95803 0.83641 0.75352 0.76068 0.76078 1.21205 1.22473 1.20921 1.19593 0.99020 0.88430 1.41877 0.93147 1.44080 1.55603 1.01714 1.25162 1.21252 0.87248 1.02366 0.74728 1.50168 1.52323 1.05828 1.27421 1.21856 0.95501 0.88778 0.94507 1.21849 0.96721 0.95931 0.96141 1.23036 0.97815 1.00618 0.96108 1.23588 0.92210 1.01182 0.86041 1.88953 1.67667 1.54508 1.18842 1.23133 0.91361 0.92218 0.94421 1.22447 1.02626 0.94084 0.99453 1.20729 0.79692 0.85918 0.83948 1.90756 1.60826 1.17576 1.69283 1.21196 0.91532 0.89741 0.96795 1.23040 1.06098 1.02369 0.91029 1.23339 0.99951 0.99025 1.03915 0.92351 0.93124 0.87191 0.90725 0.91911 0.89929 0.89707 0.92235 0.89158 0.91860 0.88886 0.88729 0.88431 0.89718 0.88094 0.90620 0.90852 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 12.21 55.49 0.68 -25.92 16 2 C 0.01 0.39 4.82 -17.43 -0.08 0.30 16 3 Si 1.06 27.34 30.00 -169.99 -5.10 22.24 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.36 -9.86 8.19 -15.06 -0.12 -9.99 16 8 H 0.05 1.44 7.12 -52.48 -0.37 1.07 16 9 N -0.55 -13.00 2.81 -169.35 -0.48 -13.47 16 10 C 0.35 7.81 5.69 -63.75 -0.36 7.45 16 11 N -0.62 -11.94 3.19 -176.54 -0.56 -12.50 16 12 C 0.12 1.70 6.42 -3.68 -0.02 1.68 16 13 C -0.11 -1.35 0.85 -154.33 -0.13 -1.48 16 14 C -0.14 -1.31 6.23 -25.29 -0.16 -1.46 16 15 C 0.05 0.46 7.74 38.38 0.30 0.75 16 16 O -0.38 -5.11 11.55 -35.23 -0.41 -5.52 16 17 C 0.07 0.90 7.10 37.00 0.26 1.17 16 18 C -0.15 -2.13 6.02 -27.33 -0.16 -2.30 16 19 C 0.51 10.61 8.05 -10.62 -0.09 10.52 16 20 O -0.51 -13.25 17.59 5.55 0.10 -13.15 16 21 C 0.12 2.36 6.59 -67.93 -0.45 1.91 16 22 C -0.19 -3.66 9.78 -26.70 -0.26 -3.92 16 23 C -0.22 -4.11 10.26 -26.69 -0.27 -4.38 16 24 H 0.27 7.76 7.22 -40.82 -0.29 7.47 16 25 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 26 H 0.11 2.91 5.19 -51.93 -0.27 2.64 16 27 H 0.07 1.09 7.47 -51.93 -0.39 0.71 16 28 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 29 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 30 H 0.08 0.68 7.46 -51.93 -0.39 0.29 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.92 7.34 -51.93 -0.38 0.53 16 34 H 0.09 1.40 7.37 -51.93 -0.38 1.02 16 35 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 36 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 37 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 38 H 0.10 2.25 6.70 -51.93 -0.35 1.90 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -32.41 329.83 -8.52 -40.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.17 Total: 2.16 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.55 Total: 0.25 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.36 Total: -51.89 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.31 Total: -18.67 kcal Atomic # 14 Polarization: 27.34 SS G_CDS: -5.10 Total: 22.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.41 -8.52 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756851637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.955 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds