Wall clock time and date at job start Tue Mar 31 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99578 * 2 1 4 4 H 1.48496 * 109.47489 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47020 * 120.00417 * 3 2 1 6 6 H 1.48504 * 109.46591 * 239.99463 * 3 2 1 7 7 C 1.38808 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99921 * 206.94882 * 7 2 1 9 9 N 1.36938 * 120.00250 * 26.94331 * 7 2 1 10 10 C 1.46500 * 119.99559 * 35.58799 * 9 7 2 11 11 N 1.46496 * 109.47194 * 90.00283 * 10 9 7 12 12 C 1.47114 * 124.34932 * 89.99723 * 11 10 9 13 13 C 1.53045 * 105.15596 * 195.67045 * 12 11 10 14 14 C 1.53415 * 111.84529 * 215.79906 * 13 12 11 15 15 C 1.55314 * 101.70643 * 217.44671 * 14 13 12 16 16 O 1.44518 * 103.69066 * 35.85848 * 15 14 13 17 17 C 1.44165 * 107.04541 * 320.82652 * 16 15 14 18 18 C 1.53199 * 103.34437 * 336.14097 * 13 12 11 19 19 C 1.34592 * 124.34647 * 269.69488 * 11 10 9 20 20 O 1.21284 * 124.94274 * 359.66722 * 19 11 10 21 21 C 1.46492 * 120.00126 * 215.59229 * 9 7 2 22 22 C 1.52998 * 117.50348 * 8.69191 * 21 9 7 23 23 C 1.53003 * 117.49868 * 300.03311 * 21 9 7 24 24 H 0.97000 * 119.99890 * 185.55339 * 1 2 3 25 25 H 1.09006 * 109.46671 * 209.99932 * 10 9 7 26 26 H 1.09000 * 109.47040 * 329.99616 * 10 9 7 27 27 H 1.09000 * 110.30351 * 314.58757 * 12 11 10 28 28 H 1.08998 * 110.30854 * 76.75046 * 12 11 10 29 29 H 1.09000 * 110.97520 * 335.55118 * 14 13 12 30 30 H 1.08999 * 110.97624 * 99.34203 * 14 13 12 31 31 H 1.08993 * 110.58178 * 277.30548 * 15 14 13 32 32 H 1.09003 * 110.70685 * 154.47293 * 15 14 13 33 33 H 1.08996 * 110.00527 * 266.81444 * 17 16 15 34 34 H 1.08999 * 110.03924 * 145.47724 * 17 16 15 35 35 H 1.09002 * 110.54451 * 141.90358 * 18 13 12 36 36 H 1.08992 * 110.54791 * 264.71091 * 18 13 12 37 37 H 1.09000 * 115.55260 * 154.36744 * 21 9 7 38 38 H 1.09004 * 117.49920 * 0.02562 * 22 21 9 39 39 H 1.08998 * 117.50105 * 145.01931 * 22 21 9 40 40 H 1.09003 * 117.50260 * 214.98662 * 23 21 9 41 41 H 1.08998 * 117.49748 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0024 -1.2526 0.4245 9 7 1.4372 -2.3239 -0.5363 10 6 0.5753 -2.2132 -1.7157 11 7 1.3871 -2.3459 -2.9280 12 6 1.6725 -3.6230 -3.6001 13 6 2.8433 -3.3273 -4.5404 14 6 2.7365 -4.1175 -5.8511 15 6 4.2230 -4.4729 -6.1268 16 8 4.7697 -4.7038 -4.8091 17 6 4.1877 -3.7190 -3.9317 18 6 2.7339 -1.8178 -4.7775 19 6 1.9627 -1.3144 -3.5731 20 8 1.8783 -0.1517 -3.2386 21 6 1.6859 -3.6346 0.0688 22 6 2.4224 -3.6656 1.4095 23 6 3.1356 -4.1194 0.1334 24 1 -0.4850 -0.8361 0.0813 25 1 -0.1752 -3.0034 -1.6927 26 1 0.0804 -1.2420 -1.7142 27 1 1.9564 -4.3800 -2.8691 28 1 0.8039 -3.9531 -4.1698 29 1 2.1383 -5.0186 -5.7157 30 1 2.3291 -3.4966 -6.6489 31 1 4.7323 -3.6406 -6.6124 32 1 4.2973 -5.3739 -6.7358 33 1 4.8370 -2.8458 -3.8684 34 1 4.0380 -4.1447 -2.9395 35 1 3.7242 -1.3641 -4.8176 36 1 2.1811 -1.6136 -5.6943 37 1 0.9117 -4.3838 -0.0975 38 1 2.7216 -2.7107 1.8416 39 1 2.1330 -4.4352 2.1251 40 1 3.3153 -5.1874 0.0099 41 1 3.9043 -3.4632 -0.2747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756851637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:30 Heat of formation + Delta-G solvation = -40.347146 kcal Electronic energy + Delta-G solvation = -23725.089829 eV Core-core repulsion = 20412.984514 eV Total energy + Delta-G solvation = -3312.105315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93327 -39.73221 -38.76526 -36.96928 -35.68963 -33.83360 -31.83643 -30.57191 -29.12877 -27.63036 -26.28394 -24.66842 -23.54645 -23.07041 -21.97352 -20.84920 -20.53595 -19.02232 -17.82044 -17.32760 -17.07188 -16.94550 -16.43191 -15.98228 -15.82563 -15.71805 -15.53249 -14.87060 -14.68670 -14.39912 -13.88401 -13.72360 -13.53651 -13.48737 -13.07715 -12.85716 -12.66820 -12.48287 -12.31225 -12.20922 -12.06333 -11.78954 -11.71810 -11.68974 -11.45911 -11.09043 -10.66532 -10.58334 -10.34747 -9.57354 -8.87710 -8.23840 -5.54794 1.41663 1.60045 1.71426 1.79367 2.35054 2.59213 2.95766 3.12506 3.26803 3.31625 3.32384 3.46173 3.53828 3.98650 4.01758 4.16161 4.24125 4.28965 4.36119 4.41690 4.51655 4.55827 4.60830 4.66008 4.71365 4.81557 4.83116 4.85354 4.93555 4.93954 5.02077 5.11953 5.15284 5.22955 5.44495 5.76905 5.88180 5.94492 6.38546 6.46863 7.03696 7.45605 7.69765 8.09491 8.94498 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.007138 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.209102 B = 3921.689608 C = 4648.144337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.028 4.028 3 Si 1.086 2.914 4 H -0.291 1.291 5 H -0.276 1.276 6 H -0.297 1.297 7 C -0.345 4.345 8 H 0.029 0.971 9 N -0.564 5.564 10 C 0.355 3.645 11 N -0.620 5.620 12 C 0.117 3.883 13 C -0.096 4.096 14 C -0.126 4.126 15 C 0.039 3.961 16 O -0.397 6.397 17 C 0.068 3.932 18 C -0.130 4.130 19 C 0.492 3.508 20 O -0.577 6.577 21 C 0.101 3.899 22 C -0.190 4.190 23 C -0.197 4.197 24 H 0.259 0.741 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -13.619 -12.902 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.228 4.228 3 Si 0.914 3.086 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.225 1.225 7 C -0.474 4.474 8 H 0.047 0.953 9 N -0.284 5.284 10 C 0.148 3.852 11 N -0.357 5.357 12 C -0.005 4.005 13 C -0.096 4.096 14 C -0.164 4.164 15 C -0.036 4.036 16 O -0.317 6.317 17 C -0.009 4.009 18 C -0.170 4.170 19 C 0.280 3.720 20 O -0.456 6.456 21 C -0.007 4.007 22 C -0.229 4.229 23 C -0.237 4.237 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.029 -11.503 -12.614 17.540 hybrid contribution 0.271 -0.908 0.592 1.118 sum 4.300 -12.412 -12.022 17.806 Atomic orbital electron populations 1.70900 1.07531 1.29503 1.48391 1.26400 0.96196 1.03492 0.96718 0.83257 0.74760 0.74439 0.76167 1.21653 1.20151 1.22498 1.19485 0.97794 0.89844 1.40302 0.95286 1.44123 1.55869 1.02111 1.26275 1.20900 0.87728 1.01063 0.75517 1.49977 1.51338 1.07872 1.26547 1.22148 0.97451 0.86113 0.94820 1.21806 0.95344 0.94825 0.97675 1.23053 0.97968 1.01018 0.94313 1.23873 0.92283 1.02841 0.84638 1.88945 1.68160 1.54185 1.20408 1.22978 0.91892 0.91803 0.94239 1.22408 1.01946 0.95145 0.97542 1.21800 0.79538 0.85227 0.85475 1.90713 1.63126 1.20314 1.71454 1.21472 0.93262 0.88683 0.97246 1.23040 1.06326 1.01817 0.91688 1.23241 0.97803 1.00433 1.02260 0.93098 0.90328 0.91705 0.90524 0.88658 0.88209 0.87360 0.91489 0.86738 0.93288 0.90471 0.88595 0.85318 0.86737 0.91625 0.87400 0.87153 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.82 12.21 21.65 0.26 -56.56 16 2 C -0.03 -1.64 4.82 84.86 0.41 -1.23 16 3 Si 1.09 57.54 30.00 68.60 2.06 59.59 16 4 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 7 C -0.34 -19.46 8.19 84.03 0.69 -18.77 16 8 H 0.03 1.74 7.12 -2.91 -0.02 1.72 16 9 N -0.56 -26.99 2.81 -689.70 -1.94 -28.93 16 10 C 0.36 15.90 5.69 170.96 0.97 16.87 16 11 N -0.62 -23.50 3.19 -830.94 -2.65 -26.15 16 12 C 0.12 3.02 6.42 86.28 0.55 3.57 16 13 C -0.10 -2.15 0.85 -52.07 -0.04 -2.19 16 14 C -0.13 -1.75 6.23 31.53 0.20 -1.55 16 15 C 0.04 0.61 7.74 72.78 0.56 1.17 16 16 O -0.40 -9.57 11.55 -148.98 -1.72 -11.29 16 17 C 0.07 1.76 7.10 71.88 0.51 2.27 16 18 C -0.13 -3.56 6.02 30.21 0.18 -3.38 16 19 C 0.49 20.48 8.05 87.98 0.71 21.18 16 20 O -0.58 -31.21 17.59 -3.04 -0.05 -31.27 16 21 C 0.10 3.93 6.59 44.99 0.30 4.23 16 22 C -0.19 -7.22 9.78 30.62 0.30 -6.92 16 23 C -0.20 -6.93 10.26 30.62 0.31 -6.61 16 24 H 0.26 15.70 7.22 -92.71 -0.67 15.03 16 25 H 0.08 3.00 8.06 -2.38 -0.02 2.99 16 26 H 0.07 3.57 5.19 -2.39 -0.01 3.55 16 27 H 0.08 1.99 7.47 -2.39 -0.02 1.97 16 28 H 0.10 1.90 7.86 -2.39 -0.02 1.89 16 29 H 0.10 1.13 7.88 -2.39 -0.02 1.11 16 30 H 0.11 1.08 7.46 -2.39 -0.02 1.06 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.39 7.34 -2.39 -0.02 1.38 16 34 H 0.08 2.23 7.37 -2.39 -0.02 2.21 16 35 H 0.10 2.64 7.44 -2.39 -0.02 2.62 16 36 H 0.13 2.73 7.50 -2.39 -0.02 2.71 16 37 H 0.12 3.80 8.12 -2.39 -0.02 3.78 16 38 H 0.07 2.97 6.70 -2.39 -0.02 2.95 16 39 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -75.87 329.83 2.73 -73.14 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.12 Total: 12.81 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.65 Total: 8.64 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.32 Total: -111.63 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.77 Total: -42.56 kcal Atomic # 14 Polarization: 57.54 SS G_CDS: 2.06 Total: 59.59 kcal Total: -75.87 2.73 -73.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756851637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.791 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds