Wall clock time and date at job start Tue Mar 31 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48419 * 2 1 4 4 C 1.53227 * 109.48363 * 120.04790 * 2 1 3 5 5 C 1.51260 * 108.54013 * 65.34955 * 4 2 1 6 6 O 1.20762 * 120.85222 * 231.32536 * 5 4 2 7 7 C 1.51269 * 118.30072 * 51.34731 * 5 4 2 8 8 C 1.53224 * 108.53746 * 308.65112 * 7 5 4 9 9 C 1.52960 * 109.40314 * 54.62733 * 8 7 5 10 10 H 1.08999 * 109.41447 * 56.50840 * 9 8 7 11 11 C 1.50707 * 109.41500 * 176.29465 * 9 8 7 12 12 O 1.20824 * 119.99834 * 125.38023 * 11 9 8 13 13 O 1.34225 * 119.99742 * 305.38485 * 11 9 8 14 14 C 1.45202 * 116.99721 * 184.82309 * 13 11 9 15 15 C 1.53001 * 109.47396 * 183.20937 * 14 13 11 16 16 C 1.50707 * 115.54816 * 279.47100 * 15 14 13 17 17 H 1.08000 * 119.99945 * 114.72678 * 16 15 14 18 18 C 1.37873 * 119.99561 * 294.72584 * 16 15 14 19 19 N 1.31517 * 120.00349 * 354.34835 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 174.35573 * 18 16 15 21 21 H 1.48499 * 109.47247 * 59.99814 * 20 18 16 22 22 H 1.48497 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46832 * 299.99630 * 20 18 16 24 24 C 1.52994 * 117.50222 * 133.75690 * 15 14 13 25 25 C 1.52999 * 60.00116 * 252.51291 * 24 15 14 26 26 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46915 * 300.02310 * 1 2 3 28 28 H 1.09002 * 109.47589 * 60.02132 * 1 2 3 29 29 H 1.09006 * 109.62126 * 185.06473 * 4 2 1 30 30 H 1.09002 * 109.62370 * 305.63425 * 4 2 1 31 31 H 1.09011 * 109.62548 * 188.93958 * 7 5 4 32 32 H 1.08998 * 109.78872 * 68.46227 * 7 5 4 33 33 H 1.09001 * 109.48843 * 294.65087 * 8 7 5 34 34 H 1.09008 * 109.48627 * 174.60836 * 8 7 5 35 35 H 1.08999 * 109.46998 * 303.20386 * 14 13 11 36 36 H 1.08996 * 109.47545 * 63.20693 * 14 13 11 37 37 H 0.96996 * 119.99980 * 185.02889 * 19 18 16 38 38 H 1.08998 * 117.49910 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49624 * 145.02411 * 24 15 14 40 40 H 1.09003 * 117.49507 * 252.50857 * 25 24 15 41 41 H 1.08996 * 117.51523 * 107.48499 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0411 -0.7233 1.2504 5 6 1.6376 -2.1785 1.1629 6 8 1.0648 -2.7184 2.0787 7 6 1.9704 -2.9403 -0.1009 8 6 1.4619 -2.1367 -1.3023 9 6 2.0400 -0.7216 -1.2486 10 1 3.1282 -0.7757 -1.2165 11 6 1.6139 0.0406 -2.4768 12 8 1.0481 1.1022 -2.3630 13 8 1.8627 -0.4598 -3.6972 14 6 1.5219 0.3761 -4.8345 15 6 1.8003 -0.3879 -6.1306 16 6 3.2387 -0.4030 -6.5801 17 1 3.7867 -1.3333 -6.6056 18 6 3.8549 0.7708 -6.9586 19 7 3.1590 1.8842 -7.0343 20 14 5.6784 0.7797 -7.3641 21 1 5.9378 -0.1436 -8.4979 22 1 6.0953 2.1546 -7.7394 23 1 6.4517 0.3352 -6.1768 24 6 0.7212 -0.3567 -7.2147 25 6 0.9599 -1.6356 -6.4095 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 3.1273 -0.6468 1.2992 30 1 1.5992 -0.2737 2.1397 31 1 1.4832 -3.9152 -0.0798 32 1 3.0496 -3.0720 -0.1789 33 1 0.3735 -2.0860 -1.2715 34 1 1.7773 -2.6235 -2.2252 35 1 0.4653 0.6397 -4.7880 36 1 2.1243 1.2841 -4.8115 37 1 3.5743 2.6938 -7.3701 38 1 -0.1869 0.2084 -7.0048 39 1 1.0515 -0.3469 -8.2534 40 1 1.4472 -2.4672 -6.9186 41 1 0.2089 -1.9124 -5.6696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763013901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:40 Heat of formation + Delta-G solvation = -118.379914 kcal Electronic energy + Delta-G solvation = -22583.595404 eV Core-core repulsion = 19235.813584 eV Total energy + Delta-G solvation = -3347.781820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79533 -39.48485 -37.33304 -36.38753 -35.23140 -32.23258 -32.09592 -29.81127 -27.67312 -26.56272 -25.26706 -23.27294 -22.16777 -21.23866 -20.18479 -19.28447 -18.48731 -17.13170 -16.72682 -16.34776 -15.68153 -15.53118 -15.18264 -14.95953 -14.61346 -14.31631 -14.01183 -13.78345 -13.24052 -13.05634 -12.63680 -12.40881 -12.09851 -11.97734 -11.76584 -11.69768 -11.54110 -11.16177 -11.00847 -10.96696 -10.91606 -10.64357 -10.58924 -10.33946 -9.95180 -9.85996 -9.55117 -9.46664 -8.90891 -8.62868 -8.26435 -6.12701 -4.18431 1.77192 2.68392 3.23667 3.26442 3.31309 3.33228 3.91874 4.33060 4.34247 4.49270 4.74017 4.75649 4.95316 5.05949 5.07255 5.15183 5.21250 5.34536 5.43925 5.50693 5.59735 5.63385 5.77228 5.81260 5.92934 5.95604 5.99624 6.17236 6.22513 6.29216 6.32565 6.54877 6.63691 6.68670 6.95663 7.26268 7.30163 7.31199 7.39361 7.80916 8.30595 8.38372 8.81244 9.46206 10.95627 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.004409 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.490125 B = 6349.099200 C = 6568.197950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.069 4.069 3 H 0.094 0.906 4 C -0.165 4.165 5 C 0.364 3.636 6 O -0.462 6.462 7 C -0.168 4.168 8 C -0.110 4.110 9 C -0.083 4.083 10 H 0.113 0.887 11 C 0.459 3.541 12 O -0.516 6.516 13 O -0.342 6.342 14 C 0.115 3.885 15 C 0.043 3.957 16 C -0.491 4.491 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.164 4.164 25 C -0.199 4.199 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -5.581 12.427 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.088 4.088 3 H 0.112 0.888 4 C -0.203 4.203 5 C 0.240 3.760 6 O -0.336 6.336 7 C -0.206 4.206 8 C -0.147 4.147 9 C -0.102 4.102 10 H 0.131 0.869 11 C 0.302 3.698 12 O -0.406 6.406 13 O -0.257 6.257 14 C 0.042 3.958 15 C 0.043 3.957 16 C -0.528 4.528 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.721 3.279 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.202 4.202 25 C -0.236 4.236 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.176 -5.331 12.897 14.124 hybrid contribution 0.982 0.383 -0.484 1.160 sum -1.194 -4.948 12.413 13.416 Atomic orbital electron populations 1.22095 0.94306 1.01797 1.03606 1.20938 0.97081 1.00008 0.90733 0.88758 1.22408 1.03477 0.94312 1.00105 1.24925 0.73801 0.90382 0.86931 1.90402 1.31687 1.71693 1.39811 1.22323 1.04145 1.00165 0.93947 1.21578 1.01600 0.92843 0.98724 1.21129 1.03139 0.95423 0.90520 0.86880 1.23300 0.76199 0.84519 0.85806 1.90596 1.39259 1.23136 1.87639 1.86487 1.75940 1.48714 1.14569 1.22910 0.97906 0.93716 0.81288 1.18787 0.92804 0.94216 0.89903 1.20426 0.93810 0.93757 1.44853 0.91890 1.25015 0.98118 0.95377 0.94959 1.69929 1.36566 1.00543 1.44918 0.86629 0.85214 0.77130 0.78917 1.20128 1.21215 1.20048 1.22755 0.99922 0.99597 0.97906 1.22828 1.04249 0.92664 1.03833 0.92972 0.92362 0.90231 0.88023 0.88882 0.88898 0.87819 0.90543 0.88512 0.94200 0.89568 0.92647 0.91630 0.89641 0.90173 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.31 37.16 0.31 -1.60 16 2 C -0.07 -0.76 2.32 -90.52 -0.21 -0.97 16 3 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 4 C -0.17 -1.48 5.65 -27.49 -0.16 -1.64 16 5 C 0.36 3.84 5.75 -28.48 -0.16 3.68 16 6 O -0.46 -6.41 17.89 6.00 0.11 -6.31 16 7 C -0.17 -1.50 6.17 -27.49 -0.17 -1.67 16 8 C -0.11 -1.17 4.87 -26.64 -0.13 -1.30 16 9 C -0.08 -1.01 2.30 -91.81 -0.21 -1.22 16 10 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.46 8.00 6.93 36.01 0.25 8.25 16 12 O -0.52 -10.19 13.77 -18.75 -0.26 -10.45 16 13 O -0.34 -6.94 9.86 -39.25 -0.39 -7.33 16 14 C 0.11 2.66 5.32 37.16 0.20 2.86 16 15 C 0.04 1.04 1.55 -155.66 -0.24 0.80 16 16 C -0.49 -12.94 8.83 -34.44 -0.30 -13.24 16 17 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 18 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 19 N -0.88 -24.32 12.43 55.43 0.69 -23.64 16 20 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.16 -3.68 9.88 -26.73 -0.26 -3.94 16 25 C -0.20 -4.16 9.94 -26.73 -0.27 -4.42 16 26 H 0.05 0.59 5.61 -51.93 -0.29 0.30 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.13 6.02 -51.93 -0.31 0.82 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.84 6.20 -51.93 -0.32 0.52 16 34 H 0.10 1.08 7.91 -51.92 -0.41 0.67 16 35 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 36 H 0.09 2.25 7.15 -51.93 -0.37 1.88 16 37 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 38 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 39 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -30.02 334.04 -7.59 -37.61 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.30 Total: 2.34 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.45 Total: -12.70 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.69 Total: -23.64 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.54 Total: -24.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -7.59 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763013901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.771 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds