Wall clock time and date at job start Tue Mar 31 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48419 * 2 1 4 4 C 1.53227 * 109.48363 * 120.04790 * 2 1 3 5 5 C 1.51260 * 108.54013 * 65.34955 * 4 2 1 6 6 O 1.20762 * 120.85222 * 231.32536 * 5 4 2 7 7 C 1.51269 * 118.30072 * 51.34731 * 5 4 2 8 8 C 1.53224 * 108.53746 * 308.65112 * 7 5 4 9 9 C 1.52960 * 109.40314 * 54.62733 * 8 7 5 10 10 H 1.08999 * 109.41447 * 56.50840 * 9 8 7 11 11 C 1.50707 * 109.41500 * 176.29465 * 9 8 7 12 12 O 1.20824 * 119.99834 * 125.38023 * 11 9 8 13 13 O 1.34225 * 119.99742 * 305.38485 * 11 9 8 14 14 C 1.45202 * 116.99721 * 184.82309 * 13 11 9 15 15 C 1.53001 * 109.47396 * 183.20937 * 14 13 11 16 16 C 1.50707 * 115.54816 * 279.47100 * 15 14 13 17 17 H 1.08000 * 119.99945 * 114.72678 * 16 15 14 18 18 C 1.37873 * 119.99561 * 294.72584 * 16 15 14 19 19 N 1.31517 * 120.00349 * 354.34835 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 174.35573 * 18 16 15 21 21 H 1.48499 * 109.47247 * 59.99814 * 20 18 16 22 22 H 1.48497 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46832 * 299.99630 * 20 18 16 24 24 C 1.52994 * 117.50222 * 133.75690 * 15 14 13 25 25 C 1.52999 * 60.00116 * 252.51291 * 24 15 14 26 26 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46915 * 300.02310 * 1 2 3 28 28 H 1.09002 * 109.47589 * 60.02132 * 1 2 3 29 29 H 1.09006 * 109.62126 * 185.06473 * 4 2 1 30 30 H 1.09002 * 109.62370 * 305.63425 * 4 2 1 31 31 H 1.09011 * 109.62548 * 188.93958 * 7 5 4 32 32 H 1.08998 * 109.78872 * 68.46227 * 7 5 4 33 33 H 1.09001 * 109.48843 * 294.65087 * 8 7 5 34 34 H 1.09008 * 109.48627 * 174.60836 * 8 7 5 35 35 H 1.08999 * 109.46998 * 303.20386 * 14 13 11 36 36 H 1.08996 * 109.47545 * 63.20693 * 14 13 11 37 37 H 0.96996 * 119.99980 * 185.02889 * 19 18 16 38 38 H 1.08998 * 117.49910 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49624 * 145.02411 * 24 15 14 40 40 H 1.09003 * 117.49507 * 252.50857 * 25 24 15 41 41 H 1.08996 * 117.51523 * 107.48499 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0411 -0.7233 1.2504 5 6 1.6376 -2.1785 1.1629 6 8 1.0648 -2.7184 2.0787 7 6 1.9704 -2.9403 -0.1009 8 6 1.4619 -2.1367 -1.3023 9 6 2.0400 -0.7216 -1.2486 10 1 3.1282 -0.7757 -1.2165 11 6 1.6139 0.0406 -2.4768 12 8 1.0481 1.1022 -2.3630 13 8 1.8627 -0.4598 -3.6972 14 6 1.5219 0.3761 -4.8345 15 6 1.8003 -0.3879 -6.1306 16 6 3.2387 -0.4030 -6.5801 17 1 3.7867 -1.3333 -6.6056 18 6 3.8549 0.7708 -6.9586 19 7 3.1590 1.8842 -7.0343 20 14 5.6784 0.7797 -7.3641 21 1 5.9378 -0.1436 -8.4979 22 1 6.0953 2.1546 -7.7394 23 1 6.4517 0.3352 -6.1768 24 6 0.7212 -0.3567 -7.2147 25 6 0.9599 -1.6356 -6.4095 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 3.1273 -0.6468 1.2992 30 1 1.5992 -0.2737 2.1397 31 1 1.4832 -3.9152 -0.0798 32 1 3.0496 -3.0720 -0.1789 33 1 0.3735 -2.0860 -1.2715 34 1 1.7773 -2.6235 -2.2252 35 1 0.4653 0.6397 -4.7880 36 1 2.1243 1.2841 -4.8115 37 1 3.5743 2.6938 -7.3701 38 1 -0.1869 0.2084 -7.0048 39 1 1.0515 -0.3469 -8.2534 40 1 1.4472 -2.4672 -6.9186 41 1 0.2089 -1.9124 -5.6696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763013901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:39 Heat of formation + Delta-G solvation = -133.716566 kcal Electronic energy + Delta-G solvation = -22584.260451 eV Core-core repulsion = 19235.813584 eV Total energy + Delta-G solvation = -3348.446868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95299 -40.66489 -38.79563 -37.71052 -36.80697 -34.09229 -33.07407 -30.80188 -28.83648 -28.10710 -27.17660 -24.16162 -23.34941 -22.90690 -21.34852 -21.14398 -19.41525 -18.47384 -18.42824 -17.57505 -17.22676 -16.63432 -16.49721 -16.26887 -15.91426 -15.63140 -15.21109 -14.89786 -14.75076 -14.20433 -13.96755 -13.59184 -13.53659 -13.34025 -12.97063 -12.87303 -12.80034 -12.67948 -12.58107 -12.39776 -12.13448 -12.07987 -11.86937 -11.62047 -11.55725 -11.49146 -11.07795 -10.80330 -10.53575 -10.37748 -10.10463 -8.13016 -6.24475 0.95430 1.28899 1.44385 1.45806 1.53147 1.84945 2.42773 3.11898 3.14672 3.38419 3.48718 3.62192 3.77352 3.93345 4.13124 4.15807 4.19853 4.25458 4.33860 4.41430 4.48903 4.52058 4.65651 4.70905 4.75539 4.80207 4.90639 4.93106 4.95703 5.06326 5.09499 5.11893 5.17798 5.28435 5.36756 5.47654 5.56219 5.76283 5.80339 6.35072 6.50478 6.79580 6.88744 7.43148 8.94703 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.004409 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.490125 B = 6349.099200 C = 6568.197950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.065 4.065 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.367 3.633 6 O -0.499 6.499 7 C -0.160 4.160 8 C -0.105 4.105 9 C -0.076 4.076 10 H 0.140 0.860 11 C 0.453 3.547 12 O -0.543 6.543 13 O -0.347 6.347 14 C 0.130 3.870 15 C 0.010 3.990 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.023 3.977 19 N -0.913 5.913 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.269 1.269 24 C -0.168 4.168 25 C -0.170 4.170 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -7.014 13.546 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.083 4.083 3 H 0.108 0.892 4 C -0.194 4.194 5 C 0.245 3.755 6 O -0.375 6.375 7 C -0.198 4.198 8 C -0.143 4.143 9 C -0.094 4.094 10 H 0.158 0.842 11 C 0.298 3.702 12 O -0.434 6.434 13 O -0.263 6.263 14 C 0.056 3.944 15 C 0.010 3.990 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.177 4.177 19 N -0.550 5.550 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.194 1.194 24 C -0.206 4.206 25 C -0.207 4.207 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.010 -6.778 14.018 15.603 hybrid contribution 0.565 0.842 -0.808 1.296 sum -0.446 -5.936 13.210 14.489 Atomic orbital electron populations 1.22069 0.95294 1.01695 1.02695 1.20905 0.96261 1.00034 0.91139 0.89184 1.22389 1.05347 0.92880 0.98818 1.25272 0.72424 0.90974 0.86780 1.90407 1.33335 1.72522 1.41230 1.22313 1.05898 0.99672 0.91881 1.21530 1.01174 0.91924 0.99638 1.21327 1.04693 0.95552 0.87862 0.84249 1.24433 0.75169 0.84596 0.86043 1.90589 1.40402 1.24639 1.87794 1.86495 1.76380 1.48351 1.15073 1.22415 0.96819 0.92655 0.82510 1.18880 0.92507 0.96961 0.90678 1.20710 0.95146 0.93677 1.44627 0.92202 1.25723 1.01913 0.95063 0.95019 1.70052 1.38086 1.00956 1.45935 0.85695 0.80551 0.77021 0.78950 1.19404 1.21302 1.19369 1.22714 0.99725 1.01124 0.97014 1.22847 1.03144 0.91672 1.03018 0.92670 0.91343 0.93038 0.84981 0.88394 0.88344 0.85039 0.91309 0.88658 0.94427 0.93218 0.92916 0.90772 0.90875 0.89382 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 8.31 71.98 0.60 -3.08 16 2 C -0.06 -1.30 2.32 -10.73 -0.02 -1.32 16 3 H 0.09 1.92 7.92 -2.39 -0.02 1.90 16 4 C -0.16 -2.32 5.65 30.10 0.17 -2.15 16 5 C 0.37 6.74 5.75 29.46 0.17 6.91 16 6 O -0.50 -12.89 17.89 -1.46 -0.03 -12.92 16 7 C -0.16 -2.33 6.17 30.10 0.19 -2.15 16 8 C -0.11 -2.00 4.87 30.66 0.15 -1.85 16 9 C -0.08 -1.68 2.30 -11.56 -0.03 -1.71 16 10 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 11 C 0.45 15.60 6.93 71.24 0.49 16.09 16 12 O -0.54 -21.79 13.77 21.97 0.30 -21.49 16 13 O -0.35 -14.02 9.86 -51.37 -0.51 -14.53 16 14 C 0.13 6.13 5.32 71.98 0.38 6.51 16 15 C 0.01 0.49 1.55 -52.93 -0.08 0.41 16 16 C -0.50 -26.58 8.83 25.60 0.23 -26.35 16 17 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 18 C 0.02 1.22 5.28 84.65 0.45 1.67 16 19 N -0.91 -51.22 12.43 21.45 0.27 -50.95 16 20 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 C -0.17 -7.51 9.88 30.59 0.30 -7.20 16 25 C -0.17 -6.86 9.94 30.59 0.30 -6.56 16 26 H 0.05 1.21 5.61 -2.39 -0.01 1.20 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.05 1.48 6.02 -2.39 -0.01 1.46 16 29 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.42 6.20 -2.39 -0.01 1.40 16 34 H 0.09 1.90 7.91 -2.38 -0.02 1.88 16 35 H 0.04 1.74 7.82 -2.39 -0.02 1.72 16 36 H 0.05 2.68 7.15 -2.39 -0.02 2.67 16 37 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 38 H 0.07 3.13 8.08 -2.39 -0.02 3.11 16 39 H 0.07 3.40 8.14 -2.38 -0.02 3.38 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.39 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -65.73 334.04 6.38 -59.35 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.02 Total: 17.47 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.30 Total: -20.79 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.27 Total: -50.95 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.23 Total: -48.94 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.73 6.38 -59.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763013901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.364 kcal (2) G-P(sol) polarization free energy of solvation -65.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds