Wall clock time and date at job start Tue Mar 31 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49017 * 2 1 4 4 C 1.53238 * 109.54072 * 239.99721 * 2 1 3 5 5 C 1.51267 * 108.48585 * 294.72187 * 4 2 1 6 6 O 1.20757 * 120.85136 * 128.58767 * 5 4 2 7 7 C 1.51272 * 118.29743 * 308.61167 * 5 4 2 8 8 C 1.53230 * 108.53714 * 51.34588 * 7 5 4 9 9 C 1.52957 * 109.40539 * 305.37194 * 8 7 5 10 10 H 1.08996 * 109.41409 * 303.55998 * 9 8 7 11 11 C 1.50696 * 109.41271 * 183.70097 * 9 8 7 12 12 O 1.20826 * 120.00541 * 239.86273 * 11 9 8 13 13 O 1.34240 * 119.99978 * 59.85918 * 11 9 8 14 14 C 1.45192 * 116.99924 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46940 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55923 * 39.69415 * 15 14 13 17 17 H 1.08008 * 120.00378 * 260.59040 * 16 15 14 18 18 C 1.37885 * 120.00492 * 80.59260 * 16 15 14 19 19 N 1.31514 * 119.99312 * 1.05380 * 18 16 15 20 20 Si 1.86795 * 120.00278 * 181.05588 * 18 16 15 21 21 H 1.48503 * 109.47175 * 60.00141 * 20 18 16 22 22 H 1.48499 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47368 * 299.99808 * 20 18 16 24 24 C 1.52999 * 117.49979 * 185.37554 * 15 14 13 25 25 C 1.53006 * 60.02855 * 107.48526 * 24 15 14 26 26 H 1.09009 * 109.46982 * 299.96222 * 1 2 3 27 27 H 1.08994 * 109.47188 * 59.96300 * 1 2 3 28 28 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.68480 * 175.00345 * 4 2 1 30 30 H 1.09001 * 109.77870 * 54.49309 * 4 2 1 31 31 H 1.08999 * 109.62825 * 291.63307 * 7 5 4 32 32 H 1.09000 * 109.62202 * 171.06085 * 7 5 4 33 33 H 1.08997 * 109.48272 * 185.38901 * 8 7 5 34 34 H 1.09005 * 109.48115 * 65.35318 * 8 7 5 35 35 H 1.09003 * 109.47142 * 60.00778 * 14 13 11 36 36 H 1.08999 * 109.47743 * 300.00228 * 14 13 11 37 37 H 0.97008 * 119.99514 * 179.97438 * 19 18 16 38 38 H 1.08998 * 117.50186 * 214.98053 * 24 15 14 39 39 H 1.08999 * 117.50071 * 359.97438 * 24 15 14 40 40 H 1.08997 * 117.49976 * 107.50550 * 25 24 15 41 41 H 1.09008 * 117.49578 * 252.52374 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0426 -0.7221 -1.2506 5 6 1.6376 -2.1770 -1.1642 6 8 1.0640 -2.7156 -2.0803 7 6 1.9690 -2.9398 0.0994 8 6 1.4606 -2.1363 1.3010 9 6 2.0402 -0.7218 1.2484 10 1 3.1283 -0.7771 1.2157 11 6 1.6141 0.0401 2.4767 12 8 0.9667 1.0542 2.3644 13 8 1.9536 -0.4078 3.6958 14 6 1.5095 0.3771 4.8337 15 6 1.9873 -0.2851 6.1276 16 6 3.3786 -0.8627 6.0871 17 1 3.5192 -1.9222 5.9316 18 6 4.4722 -0.0386 6.2485 19 7 4.3005 1.2482 6.4586 20 14 6.1976 -0.7499 6.1689 21 1 6.4138 -1.3766 4.8400 22 1 7.1904 0.3358 6.3709 23 1 6.3604 -1.7742 7.2316 24 6 1.5130 0.3227 7.4492 25 6 0.9428 -1.0157 6.9751 26 1 -0.3633 0.5133 0.8904 27 1 -0.3633 0.5144 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1289 -0.6467 -1.2988 30 1 1.6045 -0.2725 -2.1417 31 1 3.0485 -3.0697 0.1762 32 1 1.4808 -3.9141 0.0774 33 1 1.7750 -2.6239 2.2237 34 1 0.3722 -2.0846 1.2695 35 1 0.4208 0.4318 4.8346 36 1 1.9238 1.3829 4.7654 37 1 5.0699 1.8280 6.5726 38 1 2.2072 0.3047 8.2893 39 1 0.8609 1.1945 7.3969 40 1 1.2619 -1.9141 7.5034 41 1 -0.0844 -1.0243 6.6105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763013905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:46 Heat of formation + Delta-G solvation = -116.424369 kcal Electronic energy + Delta-G solvation = -22684.879453 eV Core-core repulsion = 19337.182431 eV Total energy + Delta-G solvation = -3347.697022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75865 -39.44219 -37.28260 -36.36193 -35.22033 -32.18735 -31.98269 -29.76988 -27.66785 -26.54475 -25.24360 -23.23669 -22.10029 -21.20188 -20.16716 -19.31498 -18.43210 -17.10742 -16.73429 -16.20435 -15.68154 -15.47124 -15.12869 -14.89218 -14.61252 -14.27915 -13.95232 -13.78627 -13.12535 -13.02005 -12.64346 -12.38587 -12.19683 -11.91614 -11.75089 -11.69600 -11.46881 -11.16036 -10.96203 -10.94034 -10.88177 -10.60086 -10.56341 -10.35754 -9.89581 -9.77549 -9.52000 -9.46345 -8.97964 -8.49279 -8.16991 -6.07657 -4.12432 1.80721 2.72706 3.27579 3.30184 3.32984 3.35078 3.95635 4.37039 4.39184 4.53734 4.79224 4.81192 4.99728 5.10532 5.15911 5.22498 5.24742 5.28626 5.48718 5.51941 5.61278 5.67747 5.81540 5.84966 5.94764 5.97616 6.03161 6.15742 6.21975 6.29379 6.37072 6.44986 6.64071 6.73773 6.97923 7.14466 7.33061 7.33670 7.46324 7.84396 8.30252 8.47722 8.87131 9.52604 11.02122 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.004983 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.861767 B = 5617.552988 C = 6195.463380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.068 4.068 3 H 0.092 0.908 4 C -0.166 4.166 5 C 0.364 3.636 6 O -0.463 6.463 7 C -0.168 4.168 8 C -0.110 4.110 9 C -0.083 4.083 10 H 0.113 0.887 11 C 0.458 3.542 12 O -0.522 6.522 13 O -0.321 6.321 14 C 0.118 3.882 15 C 0.037 3.963 16 C -0.481 4.481 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.149 4.149 25 C -0.209 4.209 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -4.038 -10.938 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.087 4.087 3 H 0.111 0.889 4 C -0.203 4.203 5 C 0.240 3.760 6 O -0.337 6.337 7 C -0.206 4.206 8 C -0.147 4.147 9 C -0.102 4.102 10 H 0.131 0.869 11 C 0.301 3.699 12 O -0.412 6.412 13 O -0.235 6.235 14 C 0.044 3.956 15 C 0.037 3.963 16 C -0.518 4.518 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.521 5.521 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.186 4.186 25 C -0.246 4.246 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.098 -3.846 -11.360 12.674 hybrid contribution 1.042 0.017 0.151 1.053 sum -3.056 -3.829 -11.209 12.233 Atomic orbital electron populations 1.22131 0.94274 1.01786 1.03729 1.20926 0.97107 0.99897 0.90734 0.88924 1.22411 1.03490 0.94337 1.00096 1.24935 0.73765 0.90371 0.86937 1.90397 1.31730 1.71743 1.39801 1.22325 1.04191 1.00129 0.93908 1.21572 1.01493 0.92830 0.98817 1.21094 1.03300 0.95361 0.90435 0.86898 1.23338 0.76816 0.83705 0.86001 1.90565 1.37668 1.25342 1.87660 1.86580 1.70053 1.52843 1.14028 1.22700 0.95236 0.94526 0.83114 1.18786 0.93640 0.97874 0.86039 1.20243 0.87871 0.93957 1.49775 0.92035 1.24975 0.98965 0.94827 0.94575 1.69980 1.30485 1.03503 1.48105 0.86666 0.84037 0.78628 0.78720 1.20100 1.21368 1.20221 1.22561 1.01998 0.93582 1.00486 1.23104 0.97169 0.96471 1.07879 0.89841 0.92508 0.93061 0.88045 0.88918 0.87783 0.88881 0.88467 0.90568 0.94294 0.91183 0.92946 0.89449 0.91728 0.90087 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.31 37.16 0.31 -1.66 16 2 C -0.07 -0.78 2.32 -90.52 -0.21 -0.99 16 3 H 0.09 1.10 8.00 -51.93 -0.42 0.68 16 4 C -0.17 -1.57 5.66 -27.48 -0.16 -1.73 16 5 C 0.36 4.03 5.75 -28.48 -0.16 3.86 16 6 O -0.46 -6.61 17.89 6.00 0.11 -6.50 16 7 C -0.17 -1.61 6.17 -27.48 -0.17 -1.78 16 8 C -0.11 -1.24 4.90 -26.63 -0.13 -1.37 16 9 C -0.08 -1.07 2.30 -91.82 -0.21 -1.28 16 10 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.46 8.17 6.97 36.00 0.25 8.42 16 12 O -0.52 -10.23 13.63 -18.75 -0.26 -10.49 16 13 O -0.32 -6.73 9.43 -39.28 -0.37 -7.10 16 14 C 0.12 2.66 5.53 37.16 0.21 2.87 16 15 C 0.04 0.89 1.76 -155.62 -0.27 0.61 16 16 C -0.48 -12.56 8.22 -34.44 -0.28 -12.84 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.07 1.84 5.44 -17.82 -0.10 1.74 16 19 N -0.88 -24.34 12.94 55.43 0.72 -23.63 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.15 -3.35 9.52 -26.73 -0.25 -3.61 16 25 C -0.21 -4.37 9.89 -26.69 -0.26 -4.64 16 26 H 0.08 1.20 5.83 -51.92 -0.30 0.90 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.60 5.60 -51.93 -0.29 0.31 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.16 8.02 -51.93 -0.42 0.74 16 34 H 0.08 0.87 6.19 -51.93 -0.32 0.55 16 35 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 36 H 0.07 1.74 8.13 -51.93 -0.42 1.31 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.25 8.08 -51.92 -0.42 0.83 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -29.92 334.66 -7.58 -37.50 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.35 Total: 2.15 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.45 Total: -12.38 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.72 Total: -23.63 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.52 Total: -24.09 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.92 -7.58 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763013905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.924 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds