Wall clock time and date at job start Tue Mar 31 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49017 * 2 1 4 4 C 1.53238 * 109.54072 * 239.99721 * 2 1 3 5 5 C 1.51267 * 108.48585 * 294.72187 * 4 2 1 6 6 O 1.20757 * 120.85136 * 128.58767 * 5 4 2 7 7 C 1.51272 * 118.29743 * 308.61167 * 5 4 2 8 8 C 1.53230 * 108.53714 * 51.34588 * 7 5 4 9 9 C 1.52957 * 109.40539 * 305.37194 * 8 7 5 10 10 H 1.08996 * 109.41409 * 303.55998 * 9 8 7 11 11 C 1.50696 * 109.41271 * 183.70097 * 9 8 7 12 12 O 1.20826 * 120.00541 * 239.86273 * 11 9 8 13 13 O 1.34240 * 119.99978 * 59.85918 * 11 9 8 14 14 C 1.45192 * 116.99924 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46940 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55923 * 39.69415 * 15 14 13 17 17 H 1.08008 * 120.00378 * 260.59040 * 16 15 14 18 18 C 1.37885 * 120.00492 * 80.59260 * 16 15 14 19 19 N 1.31514 * 119.99312 * 1.05380 * 18 16 15 20 20 Si 1.86795 * 120.00278 * 181.05588 * 18 16 15 21 21 H 1.48503 * 109.47175 * 60.00141 * 20 18 16 22 22 H 1.48499 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47368 * 299.99808 * 20 18 16 24 24 C 1.52999 * 117.49979 * 185.37554 * 15 14 13 25 25 C 1.53006 * 60.02855 * 107.48526 * 24 15 14 26 26 H 1.09009 * 109.46982 * 299.96222 * 1 2 3 27 27 H 1.08994 * 109.47188 * 59.96300 * 1 2 3 28 28 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.68480 * 175.00345 * 4 2 1 30 30 H 1.09001 * 109.77870 * 54.49309 * 4 2 1 31 31 H 1.08999 * 109.62825 * 291.63307 * 7 5 4 32 32 H 1.09000 * 109.62202 * 171.06085 * 7 5 4 33 33 H 1.08997 * 109.48272 * 185.38901 * 8 7 5 34 34 H 1.09005 * 109.48115 * 65.35318 * 8 7 5 35 35 H 1.09003 * 109.47142 * 60.00778 * 14 13 11 36 36 H 1.08999 * 109.47743 * 300.00228 * 14 13 11 37 37 H 0.97008 * 119.99514 * 179.97438 * 19 18 16 38 38 H 1.08998 * 117.50186 * 214.98053 * 24 15 14 39 39 H 1.08999 * 117.50071 * 359.97438 * 24 15 14 40 40 H 1.08997 * 117.49976 * 107.50550 * 25 24 15 41 41 H 1.09008 * 117.49578 * 252.52374 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0426 -0.7221 -1.2506 5 6 1.6376 -2.1770 -1.1642 6 8 1.0640 -2.7156 -2.0803 7 6 1.9690 -2.9398 0.0994 8 6 1.4606 -2.1363 1.3010 9 6 2.0402 -0.7218 1.2484 10 1 3.1283 -0.7771 1.2157 11 6 1.6141 0.0401 2.4767 12 8 0.9667 1.0542 2.3644 13 8 1.9536 -0.4078 3.6958 14 6 1.5095 0.3771 4.8337 15 6 1.9873 -0.2851 6.1276 16 6 3.3786 -0.8627 6.0871 17 1 3.5192 -1.9222 5.9316 18 6 4.4722 -0.0386 6.2485 19 7 4.3005 1.2482 6.4586 20 14 6.1976 -0.7499 6.1689 21 1 6.4138 -1.3766 4.8400 22 1 7.1904 0.3358 6.3709 23 1 6.3604 -1.7742 7.2316 24 6 1.5130 0.3227 7.4492 25 6 0.9428 -1.0157 6.9751 26 1 -0.3633 0.5133 0.8904 27 1 -0.3633 0.5144 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1289 -0.6467 -1.2988 30 1 1.6045 -0.2725 -2.1417 31 1 3.0485 -3.0697 0.1762 32 1 1.4808 -3.9141 0.0774 33 1 1.7750 -2.6239 2.2237 34 1 0.3722 -2.0846 1.2695 35 1 0.4208 0.4318 4.8346 36 1 1.9238 1.3829 4.7654 37 1 5.0699 1.8280 6.5726 38 1 2.2072 0.3047 8.2893 39 1 0.8609 1.1945 7.3969 40 1 1.2619 -1.9141 7.5034 41 1 -0.0844 -1.0243 6.6105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763013905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:45 Heat of formation + Delta-G solvation = -131.503187 kcal Electronic energy + Delta-G solvation = -22685.533319 eV Core-core repulsion = 19337.182431 eV Total energy + Delta-G solvation = -3348.350888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93730 -40.64949 -38.75479 -37.72129 -36.78876 -33.97522 -33.07124 -30.79827 -28.85769 -28.04831 -27.16390 -24.16786 -23.25967 -22.92569 -21.35718 -21.15709 -19.40279 -18.56550 -18.25969 -17.49616 -17.25505 -16.56094 -16.49822 -16.26482 -15.90628 -15.60148 -15.20714 -14.87840 -14.66381 -14.30976 -13.96549 -13.60140 -13.52040 -13.37865 -12.90476 -12.85327 -12.76977 -12.67659 -12.59099 -12.37302 -12.17250 -12.06629 -11.85679 -11.58565 -11.50936 -11.43115 -11.05594 -10.85240 -10.43011 -10.38542 -9.98679 -8.07425 -6.17500 0.94448 1.31517 1.47158 1.47430 1.54846 1.90885 2.47289 3.13814 3.22879 3.38603 3.45075 3.61608 3.74622 3.93798 4.13757 4.18723 4.20489 4.25092 4.33637 4.39443 4.48693 4.53289 4.64424 4.68288 4.75188 4.81799 4.91183 4.92782 4.98382 5.05439 5.08855 5.11081 5.18460 5.29001 5.36710 5.42845 5.60231 5.79261 5.85393 6.39589 6.49327 6.84664 6.95109 7.50370 9.01651 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.004983 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.861767 B = 5617.552988 C = 6195.463380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.368 3.632 6 O -0.498 6.498 7 C -0.161 4.161 8 C -0.104 4.104 9 C -0.077 4.077 10 H 0.133 0.867 11 C 0.452 3.548 12 O -0.543 6.543 13 O -0.335 6.335 14 C 0.129 3.871 15 C 0.005 3.995 16 C -0.489 4.489 17 H 0.057 0.943 18 C 0.024 3.976 19 N -0.914 5.914 20 Si 0.949 3.051 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.272 1.272 24 C -0.154 4.154 25 C -0.181 4.181 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -5.383 -12.111 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.082 4.082 3 H 0.107 0.893 4 C -0.195 4.195 5 C 0.246 3.754 6 O -0.374 6.374 7 C -0.198 4.198 8 C -0.142 4.142 9 C -0.096 4.096 10 H 0.151 0.849 11 C 0.297 3.703 12 O -0.435 6.435 13 O -0.250 6.250 14 C 0.055 3.945 15 C 0.004 3.996 16 C -0.527 4.527 17 H 0.075 0.925 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.774 3.226 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.197 1.197 24 C -0.191 4.191 25 C -0.218 4.218 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.510 -5.203 -12.535 14.018 hybrid contribution 0.795 0.457 0.521 1.055 sum -2.716 -4.746 -12.014 13.199 Atomic orbital electron populations 1.22094 0.95031 1.01707 1.02959 1.20893 0.96467 0.99889 0.90962 0.89278 1.22392 1.05245 0.92919 0.98949 1.25251 0.72439 0.90956 0.86728 1.90401 1.33310 1.72543 1.41130 1.22316 1.05751 0.99743 0.92003 1.21517 1.01228 0.91894 0.99556 1.21281 1.04501 0.95631 0.88172 0.84935 1.24372 0.76008 0.83771 0.86149 1.90558 1.38596 1.26531 1.87775 1.86579 1.70676 1.52898 1.14806 1.22358 0.95525 0.92946 0.83658 1.18937 0.93976 0.99704 0.86972 1.20491 0.89249 0.93791 1.49139 0.92462 1.25665 1.02417 0.95069 0.94459 1.70104 1.31132 1.04598 1.49419 0.85756 0.79778 0.77875 0.79145 1.18996 1.21609 1.19746 1.22479 1.02147 0.95213 0.99296 1.23115 0.97631 0.95513 1.05544 0.92447 0.91390 0.92794 0.85226 0.88250 0.85336 0.88240 0.88939 0.91043 0.93115 0.94461 0.93289 0.91403 0.90746 0.89611 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.31 71.98 0.60 -3.15 16 2 C -0.06 -1.33 2.32 -10.73 -0.02 -1.36 16 3 H 0.09 1.97 8.00 -2.38 -0.02 1.95 16 4 C -0.16 -2.51 5.66 30.11 0.17 -2.34 16 5 C 0.37 7.17 5.75 29.46 0.17 7.34 16 6 O -0.50 -13.26 17.89 -1.44 -0.03 -13.28 16 7 C -0.16 -2.60 6.17 30.11 0.19 -2.41 16 8 C -0.10 -2.15 4.90 30.66 0.15 -2.00 16 9 C -0.08 -1.84 2.30 -11.57 -0.03 -1.87 16 10 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 11 C 0.45 15.95 6.97 71.23 0.50 16.44 16 12 O -0.54 -21.51 13.63 21.96 0.30 -21.21 16 13 O -0.33 -14.01 9.43 -51.51 -0.49 -14.49 16 14 C 0.13 5.90 5.53 71.98 0.40 6.30 16 15 C 0.00 0.22 1.76 -52.90 -0.09 0.12 16 16 C -0.49 -25.48 8.22 25.60 0.21 -25.27 16 17 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 18 C 0.02 1.24 5.44 84.66 0.46 1.70 16 19 N -0.91 -51.13 12.94 21.45 0.28 -50.85 16 20 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C -0.15 -6.93 9.52 30.60 0.29 -6.64 16 25 C -0.18 -7.31 9.89 30.62 0.30 -7.01 16 26 H 0.06 1.65 5.83 -2.38 -0.01 1.63 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.20 5.60 -2.39 -0.01 1.19 16 29 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 2.04 8.02 -2.39 -0.02 2.02 16 34 H 0.07 1.54 6.19 -2.38 -0.01 1.52 16 35 H 0.05 2.13 7.94 -2.39 -0.02 2.11 16 36 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 38 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.09 3.23 8.08 -2.38 -0.02 3.21 16 Total: -1.00 -64.78 334.66 6.39 -58.38 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.01 Total: 18.02 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.29 Total: -20.15 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.28 Total: -50.85 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.21 Total: -48.98 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -64.78 6.39 -58.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763013905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.118 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds