Wall clock time and date at job start Tue Mar 31 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49374 * 2 1 4 4 C 1.53231 * 109.48056 * 239.96297 * 2 1 3 5 5 C 1.51266 * 108.53686 * 185.39742 * 4 2 1 6 6 O 1.20764 * 120.84915 * 231.37232 * 5 4 2 7 7 C 1.51266 * 118.30188 * 51.34089 * 5 4 2 8 8 C 1.53234 * 108.54186 * 308.66062 * 7 5 4 9 9 C 1.52956 * 109.40323 * 54.62275 * 8 7 5 10 10 H 1.09001 * 109.41203 * 56.43909 * 9 8 7 11 11 C 1.50700 * 109.41112 * 176.30131 * 9 8 7 12 12 O 1.20827 * 120.00194 * 82.22402 * 11 9 8 13 13 O 1.34232 * 119.99786 * 262.21831 * 11 9 8 14 14 C 1.45196 * 117.00180 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47283 * 180.02562 * 14 13 11 16 16 C 1.50701 * 115.54322 * 294.78924 * 15 14 13 17 17 H 1.08003 * 119.99883 * 86.29846 * 16 15 14 18 18 C 1.37874 * 120.00305 * 266.01711 * 16 15 14 19 19 N 1.31522 * 119.99873 * 358.08388 * 18 16 15 20 20 Si 1.86795 * 120.00324 * 178.08764 * 18 16 15 21 21 H 1.48507 * 109.47068 * 59.99962 * 20 18 16 22 22 H 1.48500 * 109.47292 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47110 * 300.00010 * 20 18 16 24 24 C 1.52992 * 117.50166 * 80.46019 * 15 14 13 25 25 C 1.53002 * 117.49942 * 149.12573 * 15 14 13 26 26 H 1.08998 * 109.47161 * 303.85960 * 1 2 3 27 27 H 1.09004 * 109.46975 * 63.85605 * 1 2 3 28 28 H 1.08995 * 109.47226 * 183.85733 * 1 2 3 29 29 H 1.08993 * 109.62705 * 65.67848 * 4 2 1 30 30 H 1.09002 * 109.62710 * 305.10807 * 4 2 1 31 31 H 1.09003 * 109.62800 * 188.94079 * 7 5 4 32 32 H 1.09007 * 109.78401 * 68.46770 * 7 5 4 33 33 H 1.09004 * 109.47763 * 294.64591 * 8 7 5 34 34 H 1.08999 * 109.48215 * 174.60319 * 8 7 5 35 35 H 1.08997 * 109.47281 * 59.99985 * 14 13 11 36 36 H 1.09001 * 109.47043 * 300.00360 * 14 13 11 37 37 H 0.96998 * 120.00091 * 180.02562 * 19 18 16 38 38 H 1.08991 * 117.49994 * 215.00212 * 24 15 14 39 39 H 1.09000 * 117.49714 * 0.02872 * 24 15 14 40 40 H 1.09001 * 117.49491 * 359.97047 * 25 15 14 41 41 H 1.08993 * 117.49721 * 144.97110 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7231 -1.2506 5 6 3.5475 -0.8285 -1.1633 6 8 4.2476 -0.4679 -2.0789 7 6 4.1547 -1.3964 0.1003 8 6 3.5670 -0.6490 1.3020 9 6 2.0401 -0.7218 1.2485 10 1 1.7281 -1.7656 1.2151 11 6 1.4641 -0.0657 2.4768 12 8 1.3380 1.1353 2.5174 13 8 1.0909 -0.8156 3.5257 14 6 0.5437 -0.1164 4.6745 15 6 0.1790 -1.1291 5.7619 16 6 -0.9299 -2.0876 5.4115 17 1 -0.7058 -3.0034 4.8847 18 6 -2.2298 -1.7982 5.7687 19 7 -2.4971 -0.7042 6.4480 20 14 -3.6112 -2.9600 5.2878 21 1 -3.3642 -4.2969 5.8852 22 1 -4.9036 -2.4261 5.7878 23 1 -3.6641 -3.0808 3.8087 24 6 1.3108 -1.6519 6.6487 25 6 0.2829 -0.6706 7.2179 26 1 -0.3633 0.5726 0.8534 27 1 -0.3633 0.4528 -0.9226 28 1 -0.3633 -1.0253 0.0691 29 1 1.7645 -0.1566 -2.1397 30 1 1.6065 -1.7216 -1.2995 31 1 5.2363 -1.2625 0.0791 32 1 3.9188 -2.4578 0.1783 33 1 3.8826 0.3939 1.2711 34 1 3.9208 -1.1089 2.2247 35 1 -0.3490 0.4325 4.3746 36 1 1.2859 0.5813 5.0625 37 1 -3.4115 -0.5008 6.6996 38 1 1.2533 -2.6890 6.9789 39 1 2.3152 -1.2739 6.4579 40 1 0.6115 0.3524 7.4011 41 1 -0.4510 -1.0620 7.9223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763013907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:48 Heat of formation + Delta-G solvation = -122.635765 kcal Electronic energy + Delta-G solvation = -22425.908711 eV Core-core repulsion = 19077.942343 eV Total energy + Delta-G solvation = -3347.966368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69872 -39.51313 -37.31625 -36.36178 -35.23380 -32.79877 -31.94946 -29.87812 -27.44222 -26.66595 -25.28098 -23.22844 -21.89907 -21.10995 -20.03525 -19.39790 -19.22122 -17.22309 -16.65549 -16.01258 -15.86177 -15.59934 -15.31033 -14.90189 -14.71320 -14.40988 -13.93514 -13.54609 -13.23494 -12.79256 -12.64831 -12.50826 -12.21316 -12.18567 -12.00379 -11.67034 -11.56539 -11.15000 -11.01196 -10.97804 -10.89406 -10.77106 -10.58685 -10.26422 -9.97099 -9.95011 -9.61720 -9.49900 -8.95371 -8.45614 -8.22565 -6.08623 -4.16376 1.71582 2.62869 3.19075 3.27292 3.32297 3.34376 3.86153 4.32385 4.35345 4.40926 4.67689 4.73635 4.95360 5.04819 5.09783 5.15137 5.21400 5.32578 5.41570 5.48387 5.52736 5.59110 5.66414 5.77583 5.85126 5.93121 5.95991 6.11710 6.20200 6.24319 6.28638 6.46781 6.62492 6.73602 7.05758 7.17658 7.25249 7.33750 7.56092 7.82352 8.30330 8.38912 8.86078 9.49770 10.98796 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.004503 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.962070 B = 6216.361384 C = 6810.059133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 H 0.087 0.913 4 C -0.163 4.163 5 C 0.363 3.637 6 O -0.461 6.461 7 C -0.167 4.167 8 C -0.104 4.104 9 C -0.084 4.084 10 H 0.109 0.891 11 C 0.461 3.539 12 O -0.520 6.520 13 O -0.335 6.335 14 C 0.115 3.885 15 C 0.029 3.971 16 C -0.489 4.489 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.208 4.208 25 C -0.132 4.132 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -1.299 -10.711 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.089 4.089 3 H 0.106 0.894 4 C -0.201 4.201 5 C 0.239 3.761 6 O -0.334 6.334 7 C -0.204 4.204 8 C -0.142 4.142 9 C -0.103 4.103 10 H 0.127 0.873 11 C 0.304 3.696 12 O -0.410 6.410 13 O -0.250 6.250 14 C 0.042 3.958 15 C 0.029 3.971 16 C -0.526 4.526 17 H 0.080 0.920 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.245 4.245 25 C -0.170 4.170 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.929 -0.645 -11.037 14.211 hybrid contribution -0.997 -0.410 -0.001 1.078 sum 7.932 -1.054 -11.038 13.633 Atomic orbital electron populations 1.21931 0.93500 1.02896 1.02949 1.21001 0.97139 0.99971 0.90826 0.89416 1.22410 0.94068 1.03692 0.99937 1.24937 0.91665 0.72651 0.86891 1.90409 1.65425 1.37818 1.39763 1.22305 1.02134 1.02162 0.93822 1.21453 0.92247 1.02002 0.98479 1.21132 0.96129 1.02368 0.90701 0.87251 1.23315 0.75184 0.86217 0.84898 1.90614 1.52035 1.16256 1.82099 1.86552 1.71643 1.41736 1.25085 1.22956 0.95932 0.94100 0.82807 1.18805 0.94833 0.96461 0.87032 1.20340 0.90016 1.04879 1.37404 0.91967 1.25023 0.98700 0.95293 0.94468 1.70003 1.19856 1.24626 1.37381 0.86648 0.81166 0.81109 0.79038 1.20135 1.21263 1.20129 1.23055 0.93432 0.98890 1.09165 1.22490 1.00048 0.96164 0.98257 0.91411 0.91983 0.91859 0.88801 0.87796 0.88811 0.87693 0.90499 0.89389 0.91279 0.94123 0.92866 0.90132 0.91793 0.91941 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.80 37.16 0.33 -1.52 16 2 C -0.07 -0.79 1.97 -90.52 -0.18 -0.96 16 3 H 0.09 1.07 7.98 -51.93 -0.41 0.65 16 4 C -0.16 -1.46 5.45 -27.49 -0.15 -1.61 16 5 C 0.36 3.74 6.72 -28.48 -0.19 3.54 16 6 O -0.46 -6.30 17.89 6.00 0.11 -6.19 16 7 C -0.17 -1.39 6.17 -27.48 -0.17 -1.56 16 8 C -0.10 -1.05 5.20 -26.63 -0.14 -1.19 16 9 C -0.08 -1.02 2.09 -91.81 -0.19 -1.21 16 10 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.46 7.97 5.83 36.01 0.21 8.18 16 12 O -0.52 -10.23 15.49 -18.75 -0.29 -10.52 16 13 O -0.34 -6.81 10.16 -39.26 -0.40 -7.21 16 14 C 0.12 2.61 5.29 37.16 0.20 2.80 16 15 C 0.03 0.70 1.83 -155.66 -0.29 0.42 16 16 C -0.49 -12.95 8.83 -34.44 -0.30 -13.25 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.07 1.82 5.40 -17.82 -0.10 1.72 16 19 N -0.88 -24.28 11.98 55.43 0.66 -23.61 16 20 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 25 C -0.13 -3.05 8.86 -26.69 -0.24 -3.28 16 26 H 0.07 1.01 6.78 -51.93 -0.35 0.65 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.71 8.13 -51.93 -0.42 1.28 16 36 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.10 2.37 7.69 -51.93 -0.40 1.97 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -30.36 341.25 -7.90 -38.25 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.63 Total: 1.26 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.47 Total: -12.64 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.66 Total: -23.61 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.58 Total: -23.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.36 -7.90 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763013907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.384 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds