Wall clock time and date at job start Tue Mar 31 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.61712 * 2 1 4 4 C 1.53231 * 109.62803 * 239.62467 * 2 1 3 5 5 C 1.52958 * 109.40503 * 185.46256 * 4 2 1 6 6 H 1.08996 * 109.35616 * 303.52480 * 5 4 2 7 7 C 1.50694 * 109.41309 * 183.70208 * 5 4 2 8 8 O 1.20828 * 120.00020 * 324.97679 * 7 5 4 9 9 O 1.34227 * 120.00088 * 144.97242 * 7 5 4 10 10 C 1.45203 * 117.00345 * 185.57118 * 9 7 5 11 11 C 1.52996 * 109.47449 * 182.56384 * 10 9 7 12 12 C 1.50698 * 115.54815 * 294.45162 * 11 10 9 13 13 H 1.08001 * 120.00341 * 94.15095 * 12 11 10 14 14 C 1.37884 * 119.99655 * 274.14946 * 12 11 10 15 15 N 1.31507 * 120.00412 * 9.17720 * 14 12 11 16 16 Si 1.86802 * 119.99764 * 189.18030 * 14 12 11 17 17 H 1.48496 * 109.47231 * 89.99784 * 16 14 12 18 18 H 1.48496 * 109.47174 * 210.00336 * 16 14 12 19 19 H 1.48501 * 109.47083 * 329.99836 * 16 14 12 20 20 C 1.52997 * 117.49825 * 148.77649 * 11 10 9 21 21 C 1.52998 * 117.49783 * 80.11797 * 11 10 9 22 22 C 1.52963 * 109.81592 * 63.59764 * 5 4 2 23 23 C 1.53229 * 109.40017 * 296.39965 * 22 5 4 24 24 C 1.51264 * 108.69783 * 54.53664 * 23 22 5 25 25 O 1.20762 * 120.85302 * 128.72243 * 24 23 22 26 26 H 1.09005 * 109.46902 * 180.37776 * 1 2 3 27 27 H 1.08995 * 109.47474 * 300.37396 * 1 2 3 28 28 H 1.08998 * 109.47461 * 60.38290 * 1 2 3 29 29 H 1.08998 * 109.48198 * 65.48082 * 4 2 1 30 30 H 1.09002 * 109.48003 * 305.44026 * 4 2 1 31 31 H 1.08999 * 109.46887 * 302.56836 * 10 9 7 32 32 H 1.09004 * 109.46854 * 62.55752 * 10 9 7 33 33 H 0.96997 * 120.00282 * 185.02890 * 15 14 12 34 34 H 1.08994 * 117.49983 * 0.02562 * 20 11 10 35 35 H 1.09002 * 117.49459 * 145.02044 * 20 11 10 36 36 H 1.09005 * 117.49704 * 214.97686 * 21 11 10 37 37 H 1.09001 * 117.50294 * 0.02562 * 21 11 10 38 38 H 1.08998 * 109.47968 * 176.42221 * 22 5 4 39 39 H 1.08993 * 109.48466 * 56.37951 * 22 5 4 40 40 H 1.09002 * 109.62530 * 174.34364 * 23 22 5 41 41 H 1.08997 * 109.62675 * 294.72231 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0447 -0.7298 -1.2452 5 6 3.5681 -0.8464 -1.1725 6 1 4.0018 0.1477 -1.0644 7 6 4.0827 -1.4824 -2.4380 8 8 3.4338 -2.3385 -2.9911 9 8 5.2620 -1.0978 -2.9509 10 6 5.6376 -1.6614 -4.2353 11 6 7.0296 -1.1601 -4.6249 12 6 7.1374 0.3199 -4.8878 13 1 7.4414 0.9883 -4.0959 14 6 6.8479 0.8205 -6.1395 15 7 6.3070 0.0414 -7.0505 16 14 7.2241 2.6056 -6.5413 17 1 8.5999 2.7101 -7.0903 18 1 6.2508 3.1024 -7.5468 19 1 7.1206 3.4234 -5.3061 20 6 7.9073 -2.0923 -5.4625 21 6 8.2345 -1.8538 -3.9863 22 6 3.9656 -1.7078 0.0274 23 6 3.5232 -1.0147 1.3204 24 6 2.0427 -0.7181 1.2295 25 8 1.2892 -1.0500 2.1129 26 1 -0.3633 -1.0277 0.0068 27 1 -0.3634 0.5196 0.8865 28 1 -0.3634 0.5079 -0.8934 29 1 1.7652 -0.1688 -2.1369 30 1 1.6056 -1.7264 -1.2899 31 1 5.6494 -2.7490 -4.1654 32 1 4.9157 -1.3539 -4.9920 33 1 6.1705 0.3718 -7.9521 34 1 7.4929 -3.0624 -5.7363 35 1 8.5630 -1.6350 -6.2035 36 1 9.1054 -1.2397 -3.7568 37 1 8.0356 -2.6675 -3.2889 38 1 5.0475 -1.8399 0.0376 39 1 3.4810 -2.6812 -0.0474 40 1 3.7138 -1.6696 2.1706 41 1 4.0762 -0.0836 1.4444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783389540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:19 Heat of formation + Delta-G solvation = -123.651135 kcal Electronic energy + Delta-G solvation = -22174.405743 eV Core-core repulsion = 18826.395346 eV Total energy + Delta-G solvation = -3348.010398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63389 -39.57588 -37.12971 -36.23449 -35.21965 -33.17888 -32.00845 -30.07525 -27.11289 -26.29078 -25.30152 -23.07498 -22.55940 -21.22226 -19.92496 -19.33370 -19.20763 -17.09584 -16.59254 -16.16356 -16.02140 -15.50534 -15.32347 -14.91071 -14.65096 -14.28525 -13.96435 -13.44516 -13.20072 -12.99361 -12.66099 -12.42327 -12.24797 -12.10816 -11.90090 -11.71152 -11.53876 -11.23007 -11.15787 -11.07999 -10.89751 -10.84864 -10.57584 -10.34099 -9.99008 -9.90220 -9.57485 -9.52611 -8.84968 -8.49182 -8.27019 -6.12180 -4.17036 1.75406 2.63711 3.22012 3.26364 3.33570 3.35890 3.81372 4.35912 4.39272 4.45429 4.66023 4.76535 4.93257 5.01427 5.11055 5.16522 5.18210 5.26070 5.33529 5.53363 5.56595 5.61757 5.70168 5.74531 5.79688 5.93798 5.97090 6.01260 6.08274 6.20195 6.28757 6.48644 6.60793 6.68257 6.97815 7.19831 7.29376 7.31615 7.41588 7.82058 8.30139 8.39321 8.85094 9.49210 10.97453 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.004183 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.350404 B = 6692.727102 C = 7235.837285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 H 0.108 0.892 4 C -0.096 4.096 5 C -0.087 4.087 6 H 0.110 0.890 7 C 0.459 3.541 8 O -0.521 6.521 9 O -0.336 6.336 10 C 0.115 3.885 11 C 0.037 3.963 12 C -0.489 4.489 13 H 0.064 0.936 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.147 4.147 21 C -0.204 4.204 22 C -0.103 4.103 23 C -0.166 4.166 24 C 0.365 3.635 25 O -0.456 6.456 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -0.477 12.725 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 H 0.126 0.874 4 C -0.134 4.134 5 C -0.106 4.106 6 H 0.128 0.872 7 C 0.302 3.698 8 O -0.411 6.411 9 O -0.251 6.251 10 C 0.042 3.958 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.185 4.185 21 C -0.242 4.242 22 C -0.141 4.141 23 C -0.204 4.204 24 C 0.240 3.760 25 O -0.328 6.328 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.599 -0.907 12.817 14.445 hybrid contribution 0.312 0.845 -0.683 1.131 sum -6.287 -0.062 12.134 13.666 Atomic orbital electron populations 1.21644 0.92865 1.02825 1.02302 1.21899 0.98051 1.01393 0.94521 0.87366 1.21515 0.92475 1.02305 0.97082 1.21038 0.96771 1.01763 0.91052 0.87188 1.23355 0.80042 0.80463 0.85968 1.90614 1.57886 1.30970 1.61613 1.86530 1.34785 1.65718 1.38029 1.22934 0.98992 0.94275 0.79639 1.18788 0.84981 0.94286 0.98266 1.20405 1.46114 0.89624 0.96522 0.91826 1.24992 0.93966 0.97717 0.96646 1.70014 1.41173 1.36955 1.03530 0.86629 0.78170 0.85208 0.78302 1.20565 1.21282 1.19707 1.22551 1.04222 0.99050 0.92647 1.23003 1.02432 1.03122 0.95598 1.21454 1.03055 0.98667 0.90934 1.22302 0.94899 1.03553 0.99640 1.24947 0.90880 0.74410 0.85766 1.90384 1.60387 1.42499 1.39579 0.92160 0.91951 0.91671 0.89817 0.90024 0.94284 0.90525 0.92869 0.91603 0.89478 0.90020 0.91558 0.89366 0.90587 0.88820 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.60 37.16 0.32 -0.97 16 2 C -0.14 -1.31 2.99 -91.34 -0.27 -1.59 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.10 -1.08 4.11 -26.63 -0.11 -1.19 16 5 C -0.09 -1.07 2.51 -91.82 -0.23 -1.30 16 6 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.46 8.13 6.94 36.00 0.25 8.38 16 8 O -0.52 -10.53 16.04 -18.75 -0.30 -10.83 16 9 O -0.34 -6.96 10.16 -39.25 -0.40 -7.36 16 10 C 0.11 2.64 5.35 37.16 0.20 2.84 16 11 C 0.04 0.90 1.60 -155.67 -0.25 0.65 16 12 C -0.49 -12.93 8.77 -34.44 -0.30 -13.23 16 13 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 14 C 0.07 1.86 5.37 -17.82 -0.10 1.76 16 15 N -0.88 -24.28 12.98 55.43 0.72 -23.56 16 16 Si 0.89 20.46 29.55 -169.99 -5.02 15.43 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.15 -3.33 9.47 -26.70 -0.25 -3.58 16 21 C -0.20 -4.31 9.96 -26.70 -0.27 -4.58 16 22 C -0.10 -1.06 5.20 -26.63 -0.14 -1.20 16 23 C -0.17 -1.43 6.16 -27.49 -0.17 -1.60 16 24 C 0.36 3.83 6.60 -28.45 -0.19 3.64 16 25 O -0.46 -6.15 16.90 6.00 0.10 -6.05 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 31 H 0.04 0.86 7.98 -51.93 -0.41 0.44 16 32 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 33 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -30.40 344.73 -7.92 -38.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.71 Total: 0.80 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.51 Total: -11.96 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.72 Total: -23.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.60 Total: -24.23 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.40 -7.92 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.329 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds