Wall clock time and date at job start Tue Mar 31 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.61712 * 2 1 4 4 C 1.53231 * 109.62803 * 239.62467 * 2 1 3 5 5 C 1.52958 * 109.40503 * 185.46256 * 4 2 1 6 6 H 1.08996 * 109.35616 * 303.52480 * 5 4 2 7 7 C 1.50694 * 109.41309 * 183.70208 * 5 4 2 8 8 O 1.20828 * 120.00020 * 324.97679 * 7 5 4 9 9 O 1.34227 * 120.00088 * 144.97242 * 7 5 4 10 10 C 1.45203 * 117.00345 * 185.57118 * 9 7 5 11 11 C 1.52996 * 109.47449 * 182.56384 * 10 9 7 12 12 C 1.50698 * 115.54815 * 294.45162 * 11 10 9 13 13 H 1.08001 * 120.00341 * 94.15095 * 12 11 10 14 14 C 1.37884 * 119.99655 * 274.14946 * 12 11 10 15 15 N 1.31507 * 120.00412 * 9.17720 * 14 12 11 16 16 Si 1.86802 * 119.99764 * 189.18030 * 14 12 11 17 17 H 1.48496 * 109.47231 * 89.99784 * 16 14 12 18 18 H 1.48496 * 109.47174 * 210.00336 * 16 14 12 19 19 H 1.48501 * 109.47083 * 329.99836 * 16 14 12 20 20 C 1.52997 * 117.49825 * 148.77649 * 11 10 9 21 21 C 1.52998 * 117.49783 * 80.11797 * 11 10 9 22 22 C 1.52963 * 109.81592 * 63.59764 * 5 4 2 23 23 C 1.53229 * 109.40017 * 296.39965 * 22 5 4 24 24 C 1.51264 * 108.69783 * 54.53664 * 23 22 5 25 25 O 1.20762 * 120.85302 * 128.72243 * 24 23 22 26 26 H 1.09005 * 109.46902 * 180.37776 * 1 2 3 27 27 H 1.08995 * 109.47474 * 300.37396 * 1 2 3 28 28 H 1.08998 * 109.47461 * 60.38290 * 1 2 3 29 29 H 1.08998 * 109.48198 * 65.48082 * 4 2 1 30 30 H 1.09002 * 109.48003 * 305.44026 * 4 2 1 31 31 H 1.08999 * 109.46887 * 302.56836 * 10 9 7 32 32 H 1.09004 * 109.46854 * 62.55752 * 10 9 7 33 33 H 0.96997 * 120.00282 * 185.02890 * 15 14 12 34 34 H 1.08994 * 117.49983 * 0.02562 * 20 11 10 35 35 H 1.09002 * 117.49459 * 145.02044 * 20 11 10 36 36 H 1.09005 * 117.49704 * 214.97686 * 21 11 10 37 37 H 1.09001 * 117.50294 * 0.02562 * 21 11 10 38 38 H 1.08998 * 109.47968 * 176.42221 * 22 5 4 39 39 H 1.08993 * 109.48466 * 56.37951 * 22 5 4 40 40 H 1.09002 * 109.62530 * 174.34364 * 23 22 5 41 41 H 1.08997 * 109.62675 * 294.72231 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0447 -0.7298 -1.2452 5 6 3.5681 -0.8464 -1.1725 6 1 4.0018 0.1477 -1.0644 7 6 4.0827 -1.4824 -2.4380 8 8 3.4338 -2.3385 -2.9911 9 8 5.2620 -1.0978 -2.9509 10 6 5.6376 -1.6614 -4.2353 11 6 7.0296 -1.1601 -4.6249 12 6 7.1374 0.3199 -4.8878 13 1 7.4414 0.9883 -4.0959 14 6 6.8479 0.8205 -6.1395 15 7 6.3070 0.0414 -7.0505 16 14 7.2241 2.6056 -6.5413 17 1 8.5999 2.7101 -7.0903 18 1 6.2508 3.1024 -7.5468 19 1 7.1206 3.4234 -5.3061 20 6 7.9073 -2.0923 -5.4625 21 6 8.2345 -1.8538 -3.9863 22 6 3.9656 -1.7078 0.0274 23 6 3.5232 -1.0147 1.3204 24 6 2.0427 -0.7181 1.2295 25 8 1.2892 -1.0500 2.1129 26 1 -0.3633 -1.0277 0.0068 27 1 -0.3634 0.5196 0.8865 28 1 -0.3634 0.5079 -0.8934 29 1 1.7652 -0.1688 -2.1369 30 1 1.6056 -1.7264 -1.2899 31 1 5.6494 -2.7490 -4.1654 32 1 4.9157 -1.3539 -4.9920 33 1 6.1705 0.3718 -7.9521 34 1 7.4929 -3.0624 -5.7363 35 1 8.5630 -1.6350 -6.2035 36 1 9.1054 -1.2397 -3.7568 37 1 8.0356 -2.6675 -3.2889 38 1 5.0475 -1.8399 0.0376 39 1 3.4810 -2.6812 -0.0474 40 1 3.7138 -1.6696 2.1706 41 1 4.0762 -0.0836 1.4444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783389540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:18 Heat of formation + Delta-G solvation = -138.877808 kcal Electronic energy + Delta-G solvation = -22175.066021 eV Core-core repulsion = 18826.395346 eV Total energy + Delta-G solvation = -3348.670676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80210 -40.77404 -38.71115 -37.45620 -36.79686 -34.01686 -33.96540 -31.04263 -28.72829 -27.44871 -27.04903 -24.22720 -23.38642 -22.95742 -21.22492 -21.13938 -20.10195 -18.56400 -18.29049 -17.34038 -17.19080 -16.85414 -16.54461 -16.48149 -15.80601 -15.66442 -15.23243 -14.81668 -14.44182 -14.08596 -13.80640 -13.77212 -13.56416 -13.29543 -13.16313 -12.98625 -12.76593 -12.68191 -12.60608 -12.37815 -12.09484 -12.06022 -12.02936 -11.76766 -11.63594 -11.61607 -11.20972 -10.72122 -10.47021 -10.35469 -10.08195 -8.13031 -6.23514 0.93184 1.21714 1.44286 1.46346 1.55331 1.82971 2.44808 3.03856 3.16197 3.39184 3.50498 3.58338 3.72944 3.88741 4.09942 4.15523 4.18969 4.26157 4.33794 4.39903 4.45653 4.50952 4.56203 4.67069 4.74440 4.85725 4.88844 4.91805 4.97007 4.98611 5.01664 5.16378 5.18909 5.19739 5.27696 5.46652 5.58679 5.73542 5.77247 6.37021 6.49170 6.82396 6.85291 7.45642 8.96257 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.004183 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.350404 B = 6692.727102 C = 7235.837285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 H 0.136 0.864 4 C -0.092 4.092 5 C -0.079 4.079 6 H 0.133 0.867 7 C 0.455 3.545 8 O -0.551 6.551 9 O -0.344 6.344 10 C 0.127 3.873 11 C 0.005 3.995 12 C -0.501 4.501 13 H 0.058 0.942 14 C 0.025 3.975 15 N -0.910 5.910 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.152 4.152 21 C -0.175 4.175 22 C -0.099 4.099 23 C -0.157 4.157 24 C 0.366 3.634 25 O -0.489 6.489 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 0.654 14.362 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 H 0.153 0.847 4 C -0.130 4.130 5 C -0.098 4.098 6 H 0.151 0.849 7 C 0.300 3.700 8 O -0.442 6.442 9 O -0.259 6.259 10 C 0.054 3.946 11 C 0.004 3.996 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.175 4.175 15 N -0.548 5.548 16 Si 0.775 3.225 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.189 4.189 21 C -0.212 4.212 22 C -0.136 4.136 23 C -0.194 4.194 24 C 0.244 3.756 25 O -0.364 6.364 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.932 0.227 14.469 15.639 hybrid contribution 0.069 0.451 -1.181 1.266 sum -5.863 0.678 13.288 14.539 Atomic orbital electron populations 1.21649 0.92924 1.02207 1.02932 1.21904 0.98018 1.02393 0.92927 0.84685 1.21465 0.91679 1.01804 0.98017 1.21222 0.97171 1.02692 0.88686 0.84917 1.24481 0.78698 0.79884 0.86944 1.90600 1.58305 1.32449 1.62818 1.86537 1.36521 1.65981 1.36893 1.22501 0.97655 0.94397 0.80077 1.18892 0.86341 0.93762 1.00557 1.20662 1.45723 0.90964 0.96515 0.92341 1.25692 0.93862 1.01359 0.96629 1.70123 1.42280 1.38686 1.03720 0.85683 0.77898 0.80802 0.78113 1.20067 1.21466 1.18876 1.22494 1.03918 0.99070 0.93439 1.23012 1.00740 1.02764 0.94720 1.21438 1.03510 0.97988 0.90700 1.22287 0.93542 1.04918 0.98663 1.25305 0.91626 0.73343 0.85349 1.90386 1.61313 1.43881 1.40849 0.93462 0.91747 0.90594 0.90185 0.91508 0.93728 0.94126 0.93041 0.90617 0.91195 0.89394 0.89147 0.88527 0.91586 0.87924 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.60 71.98 0.62 -1.79 16 2 C -0.13 -2.22 2.99 -11.26 -0.03 -2.25 16 3 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 4 C -0.09 -1.94 4.11 30.66 0.13 -1.81 16 5 C -0.08 -1.78 2.51 -11.57 -0.03 -1.81 16 6 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 7 C 0.46 15.86 6.94 71.23 0.49 16.36 16 8 O -0.55 -22.50 16.04 21.96 0.35 -22.15 16 9 O -0.34 -14.08 10.16 -51.39 -0.52 -14.60 16 10 C 0.13 5.93 5.35 71.98 0.39 6.32 16 11 C 0.00 0.24 1.60 -52.93 -0.08 0.15 16 12 C -0.50 -26.40 8.77 25.60 0.22 -26.17 16 13 H 0.06 3.06 7.83 -2.91 -0.02 3.03 16 14 C 0.02 1.32 5.37 84.66 0.45 1.77 16 15 N -0.91 -50.97 12.98 21.45 0.28 -50.69 16 16 Si 0.95 41.80 29.55 68.60 2.03 43.83 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.15 -6.82 9.47 30.62 0.29 -6.53 16 21 C -0.18 -7.09 9.96 30.62 0.30 -6.78 16 22 C -0.10 -1.80 5.20 30.66 0.16 -1.64 16 23 C -0.16 -2.19 6.16 30.10 0.19 -2.01 16 24 C 0.37 6.89 6.60 29.48 0.19 7.08 16 25 O -0.49 -12.53 16.90 -1.45 -0.02 -12.56 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 1.09 8.07 -2.39 -0.02 1.07 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.61 7.98 -2.39 -0.02 1.59 16 31 H 0.04 1.97 7.98 -2.39 -0.02 1.95 16 32 H 0.04 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.26 13.98 8.32 -92.71 -0.77 13.20 16 34 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -66.03 344.73 6.40 -59.63 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.00 Total: 15.64 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.29 Total: -19.11 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.28 Total: -50.69 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.19 Total: -49.30 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.03 6.40 -59.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.247 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds