Wall clock time and date at job start Tue Mar 31 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.62012 * 2 1 4 4 C 1.53223 * 109.62574 * 239.42347 * 2 1 3 5 5 C 1.52958 * 109.40376 * 294.91429 * 4 2 1 6 6 H 1.08995 * 109.41652 * 56.50956 * 5 4 2 7 7 C 1.50707 * 109.41461 * 176.29688 * 5 4 2 8 8 O 1.20826 * 119.99911 * 0.34861 * 7 5 4 9 9 O 1.34227 * 119.99936 * 180.35502 * 7 5 4 10 10 C 1.45199 * 116.99627 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.47158 * 179.97438 * 10 9 7 12 12 C 1.50698 * 115.54751 * 65.10518 * 11 10 9 13 13 H 1.08003 * 120.00131 * 266.11335 * 12 11 10 14 14 C 1.37869 * 120.00018 * 86.11378 * 12 11 10 15 15 N 1.31514 * 120.00519 * 353.70472 * 14 12 11 16 16 Si 1.86806 * 120.00088 * 173.70140 * 14 12 11 17 17 H 1.48495 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47055 * 120.00135 * 16 14 12 19 19 H 1.48501 * 109.47144 * 240.00301 * 16 14 12 20 20 C 1.52995 * 117.49626 * 279.43754 * 11 10 9 21 21 C 1.52995 * 117.50007 * 210.77594 * 11 10 9 22 22 C 1.52959 * 109.81837 * 296.40094 * 5 4 2 23 23 C 1.53233 * 109.40370 * 63.59984 * 22 5 4 24 24 C 1.51266 * 108.53191 * 305.37432 * 23 22 5 25 25 O 1.20770 * 120.84680 * 231.32140 * 24 23 22 26 26 H 1.09000 * 109.47053 * 299.62468 * 1 2 3 27 27 H 1.09000 * 109.47308 * 179.62406 * 1 2 3 28 28 H 1.09000 * 109.47283 * 59.62035 * 1 2 3 29 29 H 1.09005 * 109.48415 * 54.89149 * 4 2 1 30 30 H 1.08994 * 109.48563 * 174.93537 * 4 2 1 31 31 H 1.09002 * 109.47614 * 299.99532 * 10 9 7 32 32 H 1.09001 * 109.47327 * 59.99791 * 10 9 7 33 33 H 0.97001 * 120.00863 * 179.97438 * 15 14 12 34 34 H 1.09002 * 117.50170 * 359.97438 * 20 11 10 35 35 H 1.09007 * 117.49801 * 145.01945 * 20 11 10 36 36 H 1.08999 * 117.50188 * 214.97864 * 21 11 10 37 37 H 1.09006 * 117.49940 * 0.02562 * 21 11 10 38 38 H 1.08995 * 109.48019 * 303.62040 * 22 5 4 39 39 H 1.08999 * 109.48400 * 183.57772 * 22 5 4 40 40 H 1.08994 * 109.62486 * 185.66212 * 23 22 5 41 41 H 1.08995 * 109.78131 * 65.18146 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7341 -1.2425 5 6 1.6429 -2.2080 -1.1648 6 1 0.5609 -2.2834 -1.0571 7 6 2.0692 -2.9107 -2.4280 8 8 2.6415 -2.2968 -3.2972 9 8 1.8131 -4.2187 -2.5875 10 6 2.2530 -4.8298 -3.8289 11 6 1.8765 -6.3129 -3.8287 12 6 0.3987 -6.6082 -3.8292 13 1 -0.1187 -6.7760 -2.8962 14 6 -0.2927 -6.6642 -5.0206 15 7 0.3071 -6.3391 -6.1450 16 14 -2.0816 -7.2020 -5.0381 17 1 -2.5191 -7.5110 -3.6531 18 1 -2.9217 -6.1089 -5.5898 19 1 -2.2261 -8.4132 -5.8851 20 6 2.7887 -7.2731 -3.0628 21 6 2.7892 -7.2735 -4.5936 22 6 2.3207 -2.8675 0.0374 23 6 1.8164 -2.2136 1.3282 24 6 2.0381 -0.7206 1.2292 25 8 2.6057 -0.1191 2.1092 26 1 -0.3633 0.5080 0.8933 27 1 -0.3634 -1.0276 -0.0067 28 1 -0.3634 0.5197 -0.8866 29 1 1.6101 -0.2856 -2.1359 30 1 3.1309 -0.6554 -1.2875 31 1 1.7702 -4.3322 -4.6700 32 1 3.3346 -4.7299 -3.9199 33 1 -0.1793 -6.3788 -6.9834 34 1 3.6572 -6.8485 -2.5594 35 1 2.3199 -8.1188 -2.5596 36 1 2.3209 -8.1194 -5.0968 37 1 3.6581 -6.8491 -5.0966 38 1 3.4004 -2.7382 -0.0379 39 1 2.0818 -3.9309 0.0512 40 1 2.3694 -2.6102 2.1797 41 1 0.7534 -2.4184 1.4545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783389541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:22 Heat of formation + Delta-G solvation = -122.112248 kcal Electronic energy + Delta-G solvation = -22349.524561 eV Core-core repulsion = 19001.580895 eV Total energy + Delta-G solvation = -3347.943667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69850 -39.55142 -37.18504 -36.40202 -35.26224 -32.80173 -31.99867 -30.14738 -27.19256 -26.22384 -25.26566 -23.10854 -22.86700 -21.21838 -20.19356 -19.30559 -18.59730 -17.24689 -16.73229 -16.25019 -15.63517 -15.59216 -15.21903 -14.79916 -14.67007 -14.30440 -13.92448 -13.73826 -13.30232 -13.00893 -12.81335 -12.47216 -12.25579 -12.01238 -11.96938 -11.70724 -11.61032 -11.24111 -11.14113 -11.04046 -10.88593 -10.68171 -10.55294 -10.32881 -9.99239 -9.89608 -9.57611 -9.49554 -8.86126 -8.51302 -8.25392 -6.11142 -4.16621 1.74159 2.67393 3.21606 3.24974 3.33057 3.36726 3.84855 4.33391 4.35200 4.48034 4.68562 4.72638 4.84629 5.00245 5.15527 5.16525 5.19659 5.22070 5.32094 5.46031 5.54319 5.64899 5.69862 5.73223 5.84857 5.87888 5.94070 6.07446 6.11665 6.20486 6.28991 6.48355 6.61745 6.69099 6.99409 7.20911 7.26972 7.32206 7.43350 7.82237 8.30404 8.39393 8.85534 9.49603 10.98215 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004331 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.675529 B = 6463.045483 C = 6881.701895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 H 0.098 0.902 4 C -0.096 4.096 5 C -0.088 4.088 6 H 0.115 0.885 7 C 0.458 3.542 8 O -0.521 6.521 9 O -0.335 6.335 10 C 0.115 3.885 11 C 0.037 3.963 12 C -0.489 4.489 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.205 4.205 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.167 4.167 24 C 0.367 3.633 25 O -0.460 6.460 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 8.543 11.053 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 H 0.116 0.884 4 C -0.133 4.133 5 C -0.107 4.107 6 H 0.133 0.867 7 C 0.300 3.700 8 O -0.411 6.411 9 O -0.250 6.250 10 C 0.042 3.958 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.242 4.242 21 C -0.182 4.182 22 C -0.144 4.144 23 C -0.205 4.205 24 C 0.242 3.758 25 O -0.333 6.333 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.584 9.005 11.029 14.326 hybrid contribution -0.913 -0.292 -0.509 1.086 sum 0.671 8.713 10.520 13.676 Atomic orbital electron populations 1.21831 0.92359 1.03234 1.02955 1.21957 0.98260 1.00967 0.94531 0.88355 1.21480 1.02340 0.92389 0.97106 1.21115 1.03559 0.94622 0.91376 0.86710 1.23373 0.76253 0.82100 0.88241 1.90619 1.39551 1.67186 1.43762 1.86508 1.72961 1.22470 1.43036 1.22913 0.95859 0.94747 0.82244 1.18788 0.93190 0.85164 0.99238 1.20414 0.90807 1.48671 0.92766 0.91802 1.25015 0.98169 0.94658 0.95604 1.70006 1.36780 1.46825 0.98157 0.86545 0.84931 0.78386 0.78241 1.19572 1.21027 1.20910 1.23012 1.02250 1.04308 0.94663 1.22536 1.00494 1.03062 0.92139 1.21501 1.00607 1.01483 0.90767 1.22308 1.04499 0.93730 0.99952 1.24976 0.73770 0.91422 0.85608 1.90400 1.32300 1.70679 1.39931 0.92154 0.91305 0.90946 0.89413 0.90539 0.90639 0.94354 0.92937 0.91574 0.90059 0.89410 0.91671 0.90914 0.88491 0.88809 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.90 37.16 0.33 -0.80 16 2 C -0.14 -1.28 3.18 -91.38 -0.29 -1.57 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.10 -1.05 4.01 -26.64 -0.11 -1.16 16 5 C -0.09 -1.07 2.36 -91.81 -0.22 -1.29 16 6 H 0.12 1.23 6.40 -51.93 -0.33 0.90 16 7 C 0.46 8.05 7.25 36.01 0.26 8.31 16 8 O -0.52 -10.51 15.69 -18.75 -0.29 -10.80 16 9 O -0.33 -6.84 9.98 -39.25 -0.39 -7.23 16 10 C 0.12 2.65 5.29 37.16 0.20 2.84 16 11 C 0.04 0.88 1.62 -155.66 -0.25 0.63 16 12 C -0.49 -12.90 8.77 -34.44 -0.30 -13.20 16 13 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 14 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 15 N -0.88 -24.33 12.88 55.43 0.71 -23.62 16 16 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 C -0.21 -4.31 9.96 -26.70 -0.27 -4.58 16 21 C -0.14 -3.28 9.37 -26.70 -0.25 -3.53 16 22 C -0.11 -1.12 5.17 -26.63 -0.14 -1.26 16 23 C -0.17 -1.49 5.89 -27.48 -0.16 -1.66 16 24 C 0.37 3.92 6.06 -28.48 -0.17 3.75 16 25 O -0.46 -6.42 17.89 5.99 0.11 -6.31 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.50 5.98 -51.93 -0.31 0.19 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.93 8.13 -51.93 -0.42 1.50 16 32 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.06 8.02 -51.93 -0.42 0.64 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.75 7.82 -51.93 -0.41 0.34 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -30.48 340.52 -7.72 -38.19 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.50 Total: 0.95 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.47 Total: -11.78 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.71 Total: -23.62 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.58 Total: -24.35 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.48 -7.72 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.918 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds