Wall clock time and date at job start Tue Mar 31 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.62012 * 2 1 4 4 C 1.53223 * 109.62574 * 239.42347 * 2 1 3 5 5 C 1.52958 * 109.40376 * 294.91429 * 4 2 1 6 6 H 1.08995 * 109.41652 * 56.50956 * 5 4 2 7 7 C 1.50707 * 109.41461 * 176.29688 * 5 4 2 8 8 O 1.20826 * 119.99911 * 0.34861 * 7 5 4 9 9 O 1.34227 * 119.99936 * 180.35502 * 7 5 4 10 10 C 1.45199 * 116.99627 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.47158 * 179.97438 * 10 9 7 12 12 C 1.50698 * 115.54751 * 65.10518 * 11 10 9 13 13 H 1.08003 * 120.00131 * 266.11335 * 12 11 10 14 14 C 1.37869 * 120.00018 * 86.11378 * 12 11 10 15 15 N 1.31514 * 120.00519 * 353.70472 * 14 12 11 16 16 Si 1.86806 * 120.00088 * 173.70140 * 14 12 11 17 17 H 1.48495 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47055 * 120.00135 * 16 14 12 19 19 H 1.48501 * 109.47144 * 240.00301 * 16 14 12 20 20 C 1.52995 * 117.49626 * 279.43754 * 11 10 9 21 21 C 1.52995 * 117.50007 * 210.77594 * 11 10 9 22 22 C 1.52959 * 109.81837 * 296.40094 * 5 4 2 23 23 C 1.53233 * 109.40370 * 63.59984 * 22 5 4 24 24 C 1.51266 * 108.53191 * 305.37432 * 23 22 5 25 25 O 1.20770 * 120.84680 * 231.32140 * 24 23 22 26 26 H 1.09000 * 109.47053 * 299.62468 * 1 2 3 27 27 H 1.09000 * 109.47308 * 179.62406 * 1 2 3 28 28 H 1.09000 * 109.47283 * 59.62035 * 1 2 3 29 29 H 1.09005 * 109.48415 * 54.89149 * 4 2 1 30 30 H 1.08994 * 109.48563 * 174.93537 * 4 2 1 31 31 H 1.09002 * 109.47614 * 299.99532 * 10 9 7 32 32 H 1.09001 * 109.47327 * 59.99791 * 10 9 7 33 33 H 0.97001 * 120.00863 * 179.97438 * 15 14 12 34 34 H 1.09002 * 117.50170 * 359.97438 * 20 11 10 35 35 H 1.09007 * 117.49801 * 145.01945 * 20 11 10 36 36 H 1.08999 * 117.50188 * 214.97864 * 21 11 10 37 37 H 1.09006 * 117.49940 * 0.02562 * 21 11 10 38 38 H 1.08995 * 109.48019 * 303.62040 * 22 5 4 39 39 H 1.08999 * 109.48400 * 183.57772 * 22 5 4 40 40 H 1.08994 * 109.62486 * 185.66212 * 23 22 5 41 41 H 1.08995 * 109.78131 * 65.18146 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7341 -1.2425 5 6 1.6429 -2.2080 -1.1648 6 1 0.5609 -2.2834 -1.0571 7 6 2.0692 -2.9107 -2.4280 8 8 2.6415 -2.2968 -3.2972 9 8 1.8131 -4.2187 -2.5875 10 6 2.2530 -4.8298 -3.8289 11 6 1.8765 -6.3129 -3.8287 12 6 0.3987 -6.6082 -3.8292 13 1 -0.1187 -6.7760 -2.8962 14 6 -0.2927 -6.6642 -5.0206 15 7 0.3071 -6.3391 -6.1450 16 14 -2.0816 -7.2020 -5.0381 17 1 -2.5191 -7.5110 -3.6531 18 1 -2.9217 -6.1089 -5.5898 19 1 -2.2261 -8.4132 -5.8851 20 6 2.7887 -7.2731 -3.0628 21 6 2.7892 -7.2735 -4.5936 22 6 2.3207 -2.8675 0.0374 23 6 1.8164 -2.2136 1.3282 24 6 2.0381 -0.7206 1.2292 25 8 2.6057 -0.1191 2.1092 26 1 -0.3633 0.5080 0.8933 27 1 -0.3634 -1.0276 -0.0067 28 1 -0.3634 0.5197 -0.8866 29 1 1.6101 -0.2856 -2.1359 30 1 3.1309 -0.6554 -1.2875 31 1 1.7702 -4.3322 -4.6700 32 1 3.3346 -4.7299 -3.9199 33 1 -0.1793 -6.3788 -6.9834 34 1 3.6572 -6.8485 -2.5594 35 1 2.3199 -8.1188 -2.5596 36 1 2.3209 -8.1194 -5.0968 37 1 3.6581 -6.8491 -5.0966 38 1 3.4004 -2.7382 -0.0379 39 1 2.0818 -3.9309 0.0512 40 1 2.3694 -2.6102 2.1797 41 1 0.7534 -2.4184 1.4545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783389541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:21 Heat of formation + Delta-G solvation = -137.571749 kcal Electronic energy + Delta-G solvation = -22350.194935 eV Core-core repulsion = 19001.580895 eV Total energy + Delta-G solvation = -3348.614041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85294 -40.77390 -38.71415 -37.63735 -36.86930 -34.00349 -33.59066 -31.11173 -28.75303 -27.46155 -26.93471 -24.18882 -23.72988 -22.95218 -21.46625 -21.17285 -19.46774 -18.58526 -18.42184 -17.52728 -17.26122 -16.56953 -16.48146 -16.42567 -15.78452 -15.66113 -15.02543 -14.97572 -14.65592 -14.12789 -13.91412 -13.67867 -13.57198 -13.44754 -13.13180 -12.91717 -12.82972 -12.77082 -12.53740 -12.35702 -12.11765 -12.07671 -11.98154 -11.65445 -11.60496 -11.47601 -11.23368 -10.75233 -10.47661 -10.35003 -10.06776 -8.12144 -6.23230 0.89477 1.25874 1.42351 1.45767 1.56402 1.81969 2.44112 3.05396 3.17272 3.37999 3.47739 3.60772 3.72806 3.88572 4.09080 4.15955 4.16638 4.20913 4.32097 4.40316 4.47844 4.49287 4.59228 4.67491 4.81756 4.85783 4.88032 4.92087 4.98253 5.02471 5.07688 5.11335 5.20055 5.22459 5.39641 5.48177 5.59980 5.74381 5.77462 6.37536 6.44191 6.82795 6.85412 7.45937 8.96926 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004331 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.675529 B = 6463.045483 C = 6881.701895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 H 0.101 0.899 4 C -0.091 4.091 5 C -0.079 4.079 6 H 0.137 0.863 7 C 0.453 3.547 8 O -0.551 6.551 9 O -0.341 6.341 10 C 0.128 3.872 11 C 0.005 3.995 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.023 3.977 15 N -0.911 5.911 16 Si 0.951 3.049 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.175 4.175 21 C -0.150 4.150 22 C -0.101 4.101 23 C -0.159 4.159 24 C 0.370 3.630 25 O -0.496 6.496 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.260 0.740 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 8.514 12.785 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 H 0.119 0.881 4 C -0.129 4.129 5 C -0.098 4.098 6 H 0.155 0.845 7 C 0.298 3.702 8 O -0.442 6.442 9 O -0.257 6.257 10 C 0.054 3.946 11 C 0.004 3.996 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.177 4.177 15 N -0.549 5.549 16 Si 0.777 3.223 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.212 4.212 21 C -0.187 4.187 22 C -0.139 4.139 23 C -0.197 4.197 24 C 0.248 3.752 25 O -0.371 6.371 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.695 8.972 12.776 15.627 hybrid contribution -0.599 -0.243 -1.049 1.232 sum 0.096 8.729 11.727 14.619 Atomic orbital electron populations 1.21873 0.90713 1.04054 1.03768 1.21909 0.99518 1.00644 0.92864 0.88102 1.21434 1.01781 0.91735 0.97909 1.21285 1.04905 0.94552 0.89025 0.84503 1.24474 0.75165 0.81010 0.89531 1.90606 1.40909 1.67383 1.45308 1.86513 1.73349 1.24162 1.41628 1.22480 0.95716 0.94108 0.82247 1.18893 0.92818 0.86127 1.01733 1.20667 0.92252 1.48293 0.92563 0.92316 1.25718 1.01911 0.94788 0.95331 1.70117 1.38241 1.48001 0.98567 0.85605 0.80408 0.77799 0.78476 1.18655 1.21004 1.20744 1.23017 1.01774 1.02982 0.93475 1.22469 1.00492 1.02233 0.93554 1.21470 1.00280 1.01501 0.90639 1.22302 1.06223 0.92082 0.99064 1.25323 0.72420 0.92229 0.85220 1.90402 1.33912 1.71517 1.41290 0.91242 0.90464 0.90348 0.89836 0.91581 0.94320 0.93631 0.93093 0.89073 0.89495 0.91294 0.90672 0.91372 0.88381 0.87975 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.90 71.98 0.64 -1.21 16 2 C -0.13 -2.16 3.18 -11.28 -0.04 -2.20 16 3 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.09 -1.88 4.01 30.65 0.12 -1.75 16 5 C -0.08 -1.79 2.36 -11.57 -0.03 -1.82 16 6 H 0.14 2.54 6.40 -2.39 -0.02 2.53 16 7 C 0.45 15.71 7.25 71.24 0.52 16.22 16 8 O -0.55 -22.40 15.69 21.96 0.34 -22.05 16 9 O -0.34 -13.78 9.98 -51.39 -0.51 -14.29 16 10 C 0.13 5.93 5.29 71.98 0.38 6.31 16 11 C 0.00 0.23 1.62 -52.93 -0.09 0.14 16 12 C -0.50 -26.32 8.77 25.60 0.22 -26.10 16 13 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 14 C 0.02 1.20 5.38 84.65 0.46 1.66 16 15 N -0.91 -51.12 12.88 21.44 0.28 -50.84 16 16 Si 0.95 41.92 29.54 68.60 2.03 43.94 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C -0.18 -7.08 9.96 30.62 0.30 -6.77 16 21 C -0.15 -6.76 9.37 30.62 0.29 -6.47 16 22 C -0.10 -1.91 5.17 30.66 0.16 -1.75 16 23 C -0.16 -2.38 5.89 30.11 0.18 -2.20 16 24 C 0.37 7.14 6.06 29.46 0.18 7.32 16 25 O -0.50 -13.15 17.89 -1.48 -0.03 -13.18 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.85 5.98 -2.39 -0.01 0.83 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.81 8.00 -2.38 -0.02 1.79 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.26 13.96 8.31 -92.71 -0.77 13.18 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 36 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.89 8.02 -2.39 -0.02 1.88 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.13 1.33 7.82 -2.39 -0.02 1.31 16 Total: -1.00 -65.94 340.52 6.41 -59.52 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.01 Total: 15.52 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.30 Total: -18.62 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.28 Total: -50.84 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.19 Total: -49.52 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -65.94 6.41 -59.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.050 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds