Wall clock time and date at job start Tue Mar 31 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.62109 * 2 1 4 4 C 1.53231 * 109.62651 * 120.37771 * 2 1 3 5 5 C 1.52956 * 109.40393 * 174.53558 * 4 2 1 6 6 H 1.09003 * 109.41231 * 56.44144 * 5 4 2 7 7 C 1.50695 * 109.41468 * 176.29503 * 5 4 2 8 8 O 1.20830 * 120.00110 * 0.27436 * 7 5 4 9 9 O 1.34229 * 120.00406 * 180.02562 * 7 5 4 10 10 C 1.45196 * 117.00240 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 7 12 12 C 1.50699 * 115.55056 * 39.89184 * 11 10 9 13 13 H 1.07997 * 120.00136 * 264.96825 * 12 11 10 14 14 C 1.37877 * 120.00031 * 84.96780 * 12 11 10 15 15 N 1.31521 * 119.99774 * 358.50741 * 14 12 11 16 16 Si 1.86798 * 120.00060 * 178.50640 * 14 12 11 17 17 H 1.48497 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47031 * 120.00225 * 16 14 12 19 19 H 1.48507 * 109.47061 * 239.99827 * 16 14 12 20 20 C 1.53001 * 117.49879 * 254.17762 * 11 10 9 21 21 C 1.52997 * 60.00254 * 252.51345 * 20 11 10 22 22 C 1.52950 * 109.81609 * 296.40289 * 5 4 2 23 23 C 1.53232 * 109.40804 * 63.60043 * 22 5 4 24 24 C 1.51264 * 109.78515 * 239.52228 * 2 1 3 25 25 O 1.20762 * 120.85039 * 8.86116 * 24 2 1 26 26 H 1.09000 * 109.46979 * 299.62067 * 1 2 3 27 27 H 1.09002 * 109.47127 * 59.62448 * 1 2 3 28 28 H 1.08999 * 109.46749 * 179.62008 * 1 2 3 29 29 H 1.08998 * 109.48154 * 54.55539 * 4 2 1 30 30 H 1.09006 * 109.48114 * 294.51631 * 4 2 1 31 31 H 1.08999 * 109.47222 * 299.99748 * 10 9 7 32 32 H 1.09006 * 109.47217 * 59.99477 * 10 9 7 33 33 H 0.97009 * 119.99416 * 179.97438 * 15 14 12 34 34 H 1.08996 * 117.50142 * 0.02562 * 20 11 10 35 35 H 1.09005 * 117.49331 * 145.02573 * 20 11 10 36 36 H 1.09000 * 117.50332 * 252.50946 * 21 20 11 37 37 H 1.09003 * 117.52076 * 107.48194 * 21 20 11 38 38 H 1.09005 * 109.48187 * 183.57650 * 22 5 4 39 39 H 1.09005 * 109.48494 * 303.61790 * 22 5 4 40 40 H 1.08998 * 109.62809 * 185.65655 * 23 22 5 41 41 H 1.08998 * 109.78252 * 65.17558 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0448 -0.7299 1.2451 5 6 3.5681 -0.8465 1.1724 6 1 4.0028 0.1472 1.0637 7 6 4.0828 -1.4825 2.4380 8 8 3.3096 -1.8130 3.3057 9 8 5.3996 -1.6864 2.5992 10 6 5.8236 -2.3040 3.8430 11 6 7.3462 -2.4548 3.8444 12 6 8.1146 -1.2963 3.2625 13 1 8.4218 -1.3176 2.2273 14 6 8.4253 -0.2092 4.0515 15 7 8.0258 -0.1701 5.3040 16 14 9.4137 1.2080 3.3418 17 1 9.7385 0.9225 1.9212 18 1 8.6165 2.4582 3.4252 19 1 10.6714 1.3704 4.1147 20 6 7.9173 -3.8586 3.6347 21 6 7.9807 -3.2056 5.0169 22 6 3.9655 -1.7078 -0.0274 23 6 3.5232 -1.0147 -1.3205 24 6 2.0421 -0.7219 -1.2267 25 8 1.2878 -1.0557 -2.1087 26 1 -0.3633 0.5079 0.8934 27 1 -0.3633 0.5197 -0.8866 28 1 -0.3633 -1.0277 -0.0068 29 1 1.6056 -1.7264 1.2899 30 1 1.7652 -0.1688 2.1369 31 1 5.5194 -1.6780 4.6818 32 1 5.3614 -3.2868 3.9367 33 1 8.2447 0.5946 5.8592 34 1 7.2084 -4.6747 3.4953 35 1 8.8491 -3.9445 3.0755 36 1 8.9540 -2.8620 5.3671 37 1 7.3134 -3.5918 5.7874 38 1 5.0475 -1.8399 -0.0376 39 1 3.4809 -2.6813 0.0474 40 1 3.7138 -1.6697 -2.1706 41 1 4.0735 -0.0823 -1.4461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783389544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:24 Heat of formation + Delta-G solvation = -122.263192 kcal Electronic energy + Delta-G solvation = -22338.595687 eV Core-core repulsion = 18990.645475 eV Total energy + Delta-G solvation = -3347.950212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59224 -39.53458 -37.06833 -36.21242 -35.22810 -33.13470 -31.96936 -29.99140 -27.14940 -26.18000 -25.26278 -23.03856 -22.46256 -21.19301 -19.90091 -19.31765 -19.22407 -17.01876 -16.58817 -16.12226 -15.95166 -15.55385 -15.21898 -14.83072 -14.61375 -14.22681 -13.96887 -13.46892 -13.10618 -12.92435 -12.61535 -12.38549 -12.21527 -12.13227 -11.86303 -11.69231 -11.46586 -11.15143 -11.14139 -11.01221 -10.90099 -10.83477 -10.53353 -10.35418 -9.97063 -9.82490 -9.53291 -9.45926 -8.94748 -8.49089 -8.17293 -6.07822 -4.12815 1.79530 2.71600 3.24948 3.27775 3.33770 3.37420 3.86185 4.36961 4.40782 4.54942 4.69827 4.79367 4.97688 5.05079 5.17665 5.21501 5.22426 5.26316 5.34951 5.55770 5.60948 5.67571 5.74323 5.81468 5.89677 5.94997 5.99017 6.10938 6.12197 6.17593 6.29081 6.44939 6.64142 6.72871 6.98908 7.13673 7.33202 7.33546 7.46650 7.84703 8.29762 8.46337 8.87996 9.52566 11.01822 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.004525 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.471874 B = 6186.930460 C = 6635.272883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 H 0.107 0.893 4 C -0.093 4.093 5 C -0.087 4.087 6 H 0.114 0.886 7 C 0.457 3.543 8 O -0.525 6.525 9 O -0.321 6.321 10 C 0.117 3.883 11 C 0.035 3.965 12 C -0.479 4.479 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.884 5.884 16 Si 0.891 3.109 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.209 4.209 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.167 4.167 24 C 0.364 3.636 25 O -0.457 6.457 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 0.155 -9.138 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 H 0.125 0.875 4 C -0.131 4.131 5 C -0.106 4.106 6 H 0.132 0.868 7 C 0.300 3.700 8 O -0.416 6.416 9 O -0.236 6.236 10 C 0.043 3.957 11 C 0.034 3.966 12 C -0.517 4.517 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.247 4.247 21 C -0.183 4.183 22 C -0.144 4.144 23 C -0.205 4.205 24 C 0.239 3.761 25 O -0.330 6.330 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.976 -0.029 -9.157 13.542 hybrid contribution 0.605 0.852 0.108 1.050 sum -9.372 0.823 -9.049 13.053 Atomic orbital electron populations 1.21638 0.92938 1.02776 1.02212 1.21910 0.98008 1.01361 0.94738 0.87463 1.21477 0.92584 1.02075 0.96934 1.21067 0.96518 1.01582 0.91399 0.86839 1.23375 0.82111 0.76257 0.88233 1.90608 1.58133 1.48871 1.43974 1.86571 1.22835 1.71896 1.42263 1.22735 0.96237 0.94333 0.82361 1.18791 0.88393 0.90429 0.98952 1.20328 1.34228 1.00429 0.96739 0.91876 1.24990 0.95582 0.98074 0.94799 1.70012 1.45442 1.30228 1.06381 0.86547 0.79864 0.82298 0.79383 1.19588 1.21053 1.21046 1.23116 1.02544 0.97410 1.01597 1.22522 1.02251 1.03497 0.89982 1.21504 1.03903 0.98225 0.90740 1.22323 0.94619 1.03613 0.99936 1.24978 0.91021 0.74426 0.85653 1.90379 1.60407 1.42603 1.39610 0.91737 0.92003 0.92197 0.90558 0.89524 0.91295 0.94240 0.93066 0.91608 0.90066 0.89359 0.91739 0.88386 0.90985 0.88834 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.60 37.16 0.32 -0.97 16 2 C -0.14 -1.35 3.00 -91.37 -0.27 -1.63 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.09 -1.05 3.83 -26.63 -0.10 -1.15 16 5 C -0.09 -1.10 2.52 -91.82 -0.23 -1.33 16 6 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 7 C 0.46 8.24 7.25 36.00 0.26 8.50 16 8 O -0.53 -10.65 15.69 -18.75 -0.29 -10.94 16 9 O -0.32 -6.76 9.43 -39.26 -0.37 -7.13 16 10 C 0.12 2.66 5.53 37.16 0.21 2.86 16 11 C 0.03 0.83 1.81 -155.66 -0.28 0.55 16 12 C -0.48 -12.56 8.24 -34.44 -0.28 -12.84 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.07 1.81 5.41 -17.82 -0.10 1.71 16 15 N -0.88 -24.39 12.80 55.43 0.71 -23.68 16 16 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.21 -4.40 9.88 -26.73 -0.26 -4.67 16 21 C -0.14 -3.29 9.33 -26.73 -0.25 -3.54 16 22 C -0.11 -1.18 5.17 -26.64 -0.14 -1.32 16 23 C -0.17 -1.57 6.17 -27.48 -0.17 -1.74 16 24 C 0.36 3.97 6.58 -28.48 -0.19 3.78 16 25 O -0.46 -6.33 16.89 6.00 0.10 -6.23 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.57 8.07 -51.93 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.01 8.00 -51.93 -0.42 0.60 16 31 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.04 0.84 7.94 -51.93 -0.41 0.42 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 1.15 8.02 -51.93 -0.42 0.73 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -30.28 342.92 -7.90 -38.18 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.70 Total: 0.99 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.49 Total: -11.78 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.56 Total: -24.30 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -7.90 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.085 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds