Wall clock time and date at job start Tue Mar 31 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.62109 * 2 1 4 4 C 1.53231 * 109.62651 * 120.37771 * 2 1 3 5 5 C 1.52956 * 109.40393 * 174.53558 * 4 2 1 6 6 H 1.09003 * 109.41231 * 56.44144 * 5 4 2 7 7 C 1.50695 * 109.41468 * 176.29503 * 5 4 2 8 8 O 1.20830 * 120.00110 * 0.27436 * 7 5 4 9 9 O 1.34229 * 120.00406 * 180.02562 * 7 5 4 10 10 C 1.45196 * 117.00240 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 7 12 12 C 1.50699 * 115.55056 * 39.89184 * 11 10 9 13 13 H 1.07997 * 120.00136 * 264.96825 * 12 11 10 14 14 C 1.37877 * 120.00031 * 84.96780 * 12 11 10 15 15 N 1.31521 * 119.99774 * 358.50741 * 14 12 11 16 16 Si 1.86798 * 120.00060 * 178.50640 * 14 12 11 17 17 H 1.48497 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47031 * 120.00225 * 16 14 12 19 19 H 1.48507 * 109.47061 * 239.99827 * 16 14 12 20 20 C 1.53001 * 117.49879 * 254.17762 * 11 10 9 21 21 C 1.52997 * 60.00254 * 252.51345 * 20 11 10 22 22 C 1.52950 * 109.81609 * 296.40289 * 5 4 2 23 23 C 1.53232 * 109.40804 * 63.60043 * 22 5 4 24 24 C 1.51264 * 109.78515 * 239.52228 * 2 1 3 25 25 O 1.20762 * 120.85039 * 8.86116 * 24 2 1 26 26 H 1.09000 * 109.46979 * 299.62067 * 1 2 3 27 27 H 1.09002 * 109.47127 * 59.62448 * 1 2 3 28 28 H 1.08999 * 109.46749 * 179.62008 * 1 2 3 29 29 H 1.08998 * 109.48154 * 54.55539 * 4 2 1 30 30 H 1.09006 * 109.48114 * 294.51631 * 4 2 1 31 31 H 1.08999 * 109.47222 * 299.99748 * 10 9 7 32 32 H 1.09006 * 109.47217 * 59.99477 * 10 9 7 33 33 H 0.97009 * 119.99416 * 179.97438 * 15 14 12 34 34 H 1.08996 * 117.50142 * 0.02562 * 20 11 10 35 35 H 1.09005 * 117.49331 * 145.02573 * 20 11 10 36 36 H 1.09000 * 117.50332 * 252.50946 * 21 20 11 37 37 H 1.09003 * 117.52076 * 107.48194 * 21 20 11 38 38 H 1.09005 * 109.48187 * 183.57650 * 22 5 4 39 39 H 1.09005 * 109.48494 * 303.61790 * 22 5 4 40 40 H 1.08998 * 109.62809 * 185.65655 * 23 22 5 41 41 H 1.08998 * 109.78252 * 65.17558 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0448 -0.7299 1.2451 5 6 3.5681 -0.8465 1.1724 6 1 4.0028 0.1472 1.0637 7 6 4.0828 -1.4825 2.4380 8 8 3.3096 -1.8130 3.3057 9 8 5.3996 -1.6864 2.5992 10 6 5.8236 -2.3040 3.8430 11 6 7.3462 -2.4548 3.8444 12 6 8.1146 -1.2963 3.2625 13 1 8.4218 -1.3176 2.2273 14 6 8.4253 -0.2092 4.0515 15 7 8.0258 -0.1701 5.3040 16 14 9.4137 1.2080 3.3418 17 1 9.7385 0.9225 1.9212 18 1 8.6165 2.4582 3.4252 19 1 10.6714 1.3704 4.1147 20 6 7.9173 -3.8586 3.6347 21 6 7.9807 -3.2056 5.0169 22 6 3.9655 -1.7078 -0.0274 23 6 3.5232 -1.0147 -1.3205 24 6 2.0421 -0.7219 -1.2267 25 8 1.2878 -1.0557 -2.1087 26 1 -0.3633 0.5079 0.8934 27 1 -0.3633 0.5197 -0.8866 28 1 -0.3633 -1.0277 -0.0068 29 1 1.6056 -1.7264 1.2899 30 1 1.7652 -0.1688 2.1369 31 1 5.5194 -1.6780 4.6818 32 1 5.3614 -3.2868 3.9367 33 1 8.2447 0.5946 5.8592 34 1 7.2084 -4.6747 3.4953 35 1 8.8491 -3.9445 3.0755 36 1 8.9540 -2.8620 5.3671 37 1 7.3134 -3.5918 5.7874 38 1 5.0475 -1.8399 -0.0376 39 1 3.4809 -2.6813 0.0474 40 1 3.7138 -1.6697 -2.1706 41 1 4.0735 -0.0823 -1.4461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783389544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:24 Heat of formation + Delta-G solvation = -137.277885 kcal Electronic energy + Delta-G solvation = -22339.246773 eV Core-core repulsion = 18990.645475 eV Total energy + Delta-G solvation = -3348.601298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77575 -40.75578 -38.67036 -37.43078 -36.81679 -33.98205 -33.94316 -30.98942 -28.72319 -27.42252 -26.97369 -24.19268 -23.32094 -22.94400 -21.26059 -21.10343 -20.11962 -18.55763 -18.18485 -17.31655 -17.23737 -16.83442 -16.50062 -16.43394 -15.80105 -15.61070 -15.16400 -14.75002 -14.55519 -14.10389 -13.78631 -13.71200 -13.52423 -13.26995 -13.13276 -12.87440 -12.83921 -12.69824 -12.52474 -12.31319 -12.10548 -12.04818 -11.99832 -11.76079 -11.57277 -11.54415 -11.17880 -10.83818 -10.44342 -10.33613 -9.99152 -8.07968 -6.18288 0.93767 1.28061 1.43899 1.47282 1.57850 1.87641 2.46809 3.05146 3.22091 3.39287 3.48425 3.62940 3.70248 3.89174 4.12715 4.18931 4.20868 4.26682 4.33994 4.38658 4.46584 4.52700 4.59976 4.66750 4.78618 4.89866 4.91120 4.93390 4.98784 5.01949 5.06220 5.18812 5.19227 5.23907 5.28895 5.41200 5.61020 5.77797 5.81323 6.39423 6.49687 6.84433 6.91290 7.49948 9.01361 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.004525 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.471874 B = 6186.930460 C = 6635.272883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 H 0.134 0.866 4 C -0.087 4.087 5 C -0.079 4.079 6 H 0.135 0.865 7 C 0.452 3.548 8 O -0.552 6.552 9 O -0.334 6.334 10 C 0.127 3.873 11 C 0.003 3.997 12 C -0.487 4.487 13 H 0.058 0.942 14 C 0.022 3.978 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.285 1.285 20 C -0.181 4.181 21 C -0.150 4.150 22 C -0.101 4.101 23 C -0.159 4.159 24 C 0.367 3.633 25 O -0.489 6.489 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.258 0.742 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 0.770 -10.753 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 H 0.152 0.848 4 C -0.124 4.124 5 C -0.098 4.098 6 H 0.153 0.847 7 C 0.297 3.703 8 O -0.444 6.444 9 O -0.248 6.248 10 C 0.053 3.947 11 C 0.003 3.997 12 C -0.525 4.525 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.776 3.224 17 H -0.186 1.186 18 H -0.209 1.209 19 H -0.211 1.211 20 C -0.218 4.218 21 C -0.188 4.188 22 C -0.139 4.139 23 C -0.196 4.196 24 C 0.244 3.756 25 O -0.365 6.365 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.920 0.580 -10.785 14.665 hybrid contribution 0.553 0.618 0.630 1.042 sum -9.367 1.198 -10.156 13.867 Atomic orbital electron populations 1.21643 0.92793 1.02244 1.02915 1.21916 0.98121 1.02310 0.93009 0.84812 1.21413 0.91447 1.01770 0.97795 1.21244 0.97244 1.02263 0.89058 0.84696 1.24453 0.80815 0.75467 0.89551 1.90591 1.58330 1.50024 1.45407 1.86574 1.24799 1.72227 1.41228 1.22409 0.95690 0.94300 0.82294 1.18934 0.88946 0.91555 1.00306 1.20561 1.34099 1.01327 0.96537 0.92359 1.25682 0.96609 1.00382 0.95072 1.70127 1.46772 1.30881 1.07516 0.85618 0.78315 0.79375 0.79055 1.18584 1.20879 1.21117 1.23125 1.02787 0.96290 0.99618 1.22437 1.01349 1.04086 0.90903 1.21454 1.03619 0.97974 0.90803 1.22306 0.93646 1.04790 0.98896 1.25297 0.91497 0.73419 0.85370 1.90382 1.61226 1.43965 1.40879 0.90472 0.91855 0.93402 0.91681 0.89837 0.94513 0.93031 0.93281 0.89016 0.89587 0.91398 0.90762 0.88743 0.91431 0.88135 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.60 71.98 0.62 -1.74 16 2 C -0.13 -2.26 3.00 -11.28 -0.03 -2.29 16 3 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 4 C -0.09 -1.82 3.83 30.66 0.12 -1.70 16 5 C -0.08 -1.87 2.52 -11.57 -0.03 -1.90 16 6 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 7 C 0.45 16.05 7.25 71.23 0.52 16.57 16 8 O -0.55 -22.44 15.69 21.95 0.34 -22.10 16 9 O -0.33 -13.93 9.43 -51.41 -0.48 -14.41 16 10 C 0.13 5.81 5.53 71.98 0.40 6.21 16 11 C 0.00 0.14 1.81 -52.93 -0.10 0.05 16 12 C -0.49 -25.40 8.24 25.60 0.21 -25.19 16 13 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 14 C 0.02 1.16 5.41 84.65 0.46 1.62 16 15 N -0.91 -51.13 12.80 21.45 0.27 -50.85 16 16 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.18 -7.33 9.88 30.59 0.30 -7.03 16 21 C -0.15 -6.80 9.33 30.59 0.29 -6.51 16 22 C -0.10 -2.04 5.17 30.66 0.16 -1.88 16 23 C -0.16 -2.52 6.17 30.11 0.19 -2.34 16 24 C 0.37 7.18 6.58 29.46 0.19 7.37 16 25 O -0.49 -12.83 16.89 -1.46 -0.02 -12.86 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.07 8.07 -2.39 -0.02 1.05 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.83 8.00 -2.38 -0.02 1.81 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.17 7.94 -2.38 -0.02 2.15 16 33 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 34 H 0.09 3.23 8.08 -2.39 -0.02 3.21 16 35 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 36 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.09 2.03 8.02 -2.38 -0.02 2.01 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.24 342.92 6.42 -58.82 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.00 Total: 16.49 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.29 Total: -18.77 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.27 Total: -50.85 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.16 Total: -49.36 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -65.24 6.42 -58.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.459 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds