Wall clock time and date at job start Tue Mar 31 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.77834 * 2 1 4 4 C 1.53230 * 109.62941 * 120.47895 * 2 1 3 5 5 C 1.52962 * 109.40093 * 65.09050 * 4 2 1 6 6 H 1.09001 * 109.35550 * 303.52891 * 5 4 2 7 7 C 1.50701 * 109.41372 * 183.70663 * 5 4 2 8 8 O 1.20827 * 119.99694 * 329.41875 * 7 5 4 9 9 O 1.34224 * 120.00331 * 149.41793 * 7 5 4 10 10 C 1.45198 * 117.00129 * 175.39358 * 9 7 5 11 11 C 1.53002 * 109.47182 * 182.66421 * 10 9 7 12 12 C 1.50704 * 115.54628 * 39.09095 * 11 10 9 13 13 H 1.07998 * 119.99999 * 268.96333 * 12 11 10 14 14 C 1.37878 * 120.00003 * 88.96934 * 12 11 10 15 15 N 1.31508 * 120.00307 * 178.98706 * 14 12 11 16 16 Si 1.86804 * 119.99889 * 358.98213 * 14 12 11 17 17 H 1.48498 * 109.47276 * 84.75356 * 16 14 12 18 18 H 1.48503 * 109.47124 * 204.75704 * 16 14 12 19 19 H 1.48498 * 109.46975 * 324.75160 * 16 14 12 20 20 C 1.52997 * 117.50061 * 253.38531 * 11 10 9 21 21 C 1.52994 * 117.50005 * 184.75944 * 11 10 9 22 22 C 1.52956 * 109.81794 * 63.59729 * 5 4 2 23 23 C 1.53234 * 109.40524 * 296.40003 * 22 5 4 24 24 C 1.51268 * 108.53442 * 54.63220 * 23 22 5 25 25 O 1.20760 * 120.85020 * 128.63291 * 24 23 22 26 26 H 1.09001 * 109.47149 * 180.47212 * 1 2 3 27 27 H 1.08997 * 109.46932 * 300.47303 * 1 2 3 28 28 H 1.09006 * 109.47078 * 60.47481 * 1 2 3 29 29 H 1.09003 * 109.47982 * 185.06781 * 4 2 1 30 30 H 1.08996 * 109.47818 * 305.11410 * 4 2 1 31 31 H 1.08998 * 109.46940 * 302.66586 * 10 9 7 32 32 H 1.08999 * 109.47013 * 62.66497 * 10 9 7 33 33 H 0.96997 * 120.00698 * 179.97438 * 15 14 12 34 34 H 1.08998 * 117.49844 * 359.97438 * 20 11 10 35 35 H 1.08997 * 117.50202 * 145.02147 * 20 11 10 36 36 H 1.09000 * 117.49833 * 214.98146 * 21 11 10 37 37 H 1.09004 * 117.49706 * 0.02562 * 21 11 10 38 38 H 1.09001 * 109.47867 * 176.42293 * 22 5 4 39 39 H 1.09002 * 109.49157 * 56.38993 * 22 5 4 40 40 H 1.08998 * 109.62464 * 294.91512 * 23 22 5 41 41 H 1.09007 * 109.62438 * 174.34269 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0447 -0.7320 1.2438 5 6 1.6431 -2.2061 1.1685 6 1 0.5610 -2.2806 1.0602 7 6 2.0694 -2.9067 2.4328 8 8 3.0502 -2.5311 3.0302 9 8 1.3596 -3.9478 2.8952 10 6 1.8848 -4.6387 4.0592 11 6 0.9829 -5.8277 4.3966 12 6 0.4461 -6.5924 3.2141 13 1 -0.5024 -6.3160 2.7778 14 6 1.1658 -7.6448 2.6893 15 7 0.6881 -8.3247 1.6700 16 14 2.8196 -8.1049 3.4261 17 1 2.6106 -9.0060 4.5877 18 1 3.6417 -8.7991 2.4026 19 1 3.5214 -6.8751 3.8736 20 6 0.0816 -5.7042 5.6267 21 6 1.3054 -6.6218 5.6640 22 6 2.3209 -2.8675 -0.0326 23 6 1.8165 -2.2158 -1.3245 24 6 2.0381 -0.7225 -1.2281 25 8 2.6064 -0.1227 -2.1087 26 1 -0.3633 -1.0276 0.0085 27 1 -0.3633 0.5212 0.8857 28 1 -0.3633 0.5065 -0.8943 29 1 3.1310 -0.6531 1.2886 30 1 1.6101 -0.2820 2.1363 31 1 2.8922 -4.9959 3.8458 32 1 1.9141 -3.9532 4.9061 33 1 1.1946 -9.0649 1.3005 34 1 0.1315 -4.7760 6.1960 35 1 -0.8999 -6.1759 5.5810 36 1 1.1289 -7.6972 5.6427 37 1 2.1598 -6.2968 6.2577 38 1 2.0820 -3.9309 -0.0447 39 1 3.4006 -2.7382 0.0423 40 1 0.7530 -2.4209 -1.4470 41 1 2.3694 -2.6137 -2.1754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783389545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:27 Heat of formation + Delta-G solvation = -115.332194 kcal Electronic energy + Delta-G solvation = -22545.982609 eV Core-core repulsion = 19198.332947 eV Total energy + Delta-G solvation = -3347.649661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71178 -39.60871 -37.40045 -36.54163 -35.40530 -32.75679 -32.12665 -30.16880 -27.43483 -26.32681 -25.32206 -23.10317 -22.87565 -21.76454 -20.28033 -19.21107 -18.53643 -17.35988 -16.83804 -16.15493 -15.92754 -15.54118 -15.41324 -14.83735 -14.68795 -14.33688 -13.95158 -13.73706 -13.25080 -12.92745 -12.83030 -12.62619 -12.48632 -12.44407 -12.09332 -11.89222 -11.65506 -11.27840 -11.22130 -11.09373 -10.93544 -10.65421 -10.54792 -10.28515 -10.00614 -9.97701 -9.63936 -9.46803 -9.12323 -8.62988 -8.56622 -6.14490 -4.16352 1.78400 2.56438 3.13810 3.23873 3.34078 3.35363 3.88089 4.36652 4.36870 4.49526 4.66153 4.74054 4.86038 4.88479 5.04591 5.11686 5.18531 5.24656 5.27697 5.41417 5.54587 5.61960 5.64871 5.70927 5.77146 5.84296 5.85281 5.93618 5.97047 6.04556 6.08509 6.15094 6.26527 6.36706 6.59533 6.78350 7.00996 7.13691 7.31241 7.65366 8.24926 8.47580 8.90040 9.47942 10.97381 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.004845 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.588685 B = 5777.799001 C = 6274.146616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 H 0.098 0.902 4 C -0.097 4.097 5 C -0.086 4.086 6 H 0.113 0.887 7 C 0.459 3.541 8 O -0.525 6.525 9 O -0.316 6.316 10 C 0.104 3.896 11 C -0.007 4.007 12 C -0.473 4.473 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.275 1.275 18 H -0.293 1.293 19 H -0.265 1.265 20 C -0.176 4.176 21 C -0.195 4.195 22 C -0.107 4.107 23 C -0.166 4.166 24 C 0.367 3.633 25 O -0.460 6.460 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 13.085 -1.444 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 H 0.116 0.884 4 C -0.135 4.135 5 C -0.105 4.105 6 H 0.131 0.869 7 C 0.302 3.698 8 O -0.416 6.416 9 O -0.230 6.230 10 C 0.030 3.970 11 C -0.008 4.008 12 C -0.510 4.510 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.534 5.534 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.220 1.220 19 H -0.190 1.190 20 C -0.213 4.213 21 C -0.232 4.232 22 C -0.144 4.144 23 C -0.203 4.203 24 C 0.243 3.757 25 O -0.333 6.333 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.751 13.313 -1.834 13.460 hybrid contribution 1.053 -0.478 0.616 1.311 sum 1.804 12.835 -1.218 13.019 Atomic orbital electron populations 1.21835 0.92274 1.03413 1.02901 1.21942 0.98306 1.00865 0.94511 0.88377 1.21513 1.02636 0.92268 0.97044 1.21061 1.03914 0.94585 0.90966 0.86923 1.23491 0.81222 0.79152 0.85897 1.90604 1.27067 1.65263 1.58632 1.86635 1.50267 1.40629 1.45497 1.22891 0.97650 0.92594 0.83832 1.19350 0.97401 0.94220 0.89788 1.20121 1.07068 1.12653 1.11189 0.90008 1.24944 0.97258 0.95682 0.94527 1.69865 1.38534 1.20805 1.24151 0.86976 0.84688 0.79188 0.78780 1.20073 1.22019 1.18981 1.22927 0.95413 0.99757 1.03243 1.23018 0.98993 0.98585 1.02643 1.21484 1.00692 1.01614 0.90656 1.22297 1.04680 0.93555 0.99792 1.24960 0.73751 0.91443 0.85558 1.90396 1.32260 1.70767 1.39848 0.91096 0.91038 0.92107 0.90099 0.90007 0.91841 0.93255 0.92536 0.90819 0.89074 0.88697 0.90746 0.88515 0.90702 0.87555 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.90 37.16 0.33 -0.82 16 2 C -0.14 -1.30 3.18 -91.37 -0.29 -1.59 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.10 -1.05 4.23 -26.63 -0.11 -1.17 16 5 C -0.09 -1.10 2.36 -91.81 -0.22 -1.32 16 6 H 0.11 1.27 6.39 -51.93 -0.33 0.94 16 7 C 0.46 8.03 7.00 36.01 0.25 8.28 16 8 O -0.53 -10.19 16.01 -18.75 -0.30 -10.49 16 9 O -0.32 -6.47 9.59 -39.24 -0.38 -6.85 16 10 C 0.10 2.20 5.41 37.16 0.20 2.40 16 11 C -0.01 -0.15 1.28 -155.66 -0.20 -0.35 16 12 C -0.47 -12.60 8.82 -34.44 -0.30 -12.91 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.88 21.10 24.95 -169.99 -4.24 16.86 16 17 H -0.27 -6.42 6.92 56.52 0.39 -6.03 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -6.16 5.62 56.52 0.32 -5.84 16 20 C -0.18 -3.42 9.88 -26.73 -0.26 -3.69 16 21 C -0.20 -3.98 7.59 -26.73 -0.20 -4.18 16 22 C -0.11 -1.31 5.20 -26.63 -0.14 -1.45 16 23 C -0.17 -1.71 5.90 -27.48 -0.16 -1.87 16 24 C 0.37 4.20 6.06 -28.48 -0.17 4.02 16 25 O -0.46 -6.71 17.89 6.00 0.11 -6.61 16 26 H 0.07 0.54 5.97 -51.93 -0.31 0.23 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.41 6.51 -51.93 -0.34 1.07 16 32 H 0.05 0.95 7.94 -51.93 -0.41 0.54 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.09 2.03 6.91 -51.93 -0.36 1.67 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.11 0.92 7.82 -51.93 -0.41 0.51 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -31.34 330.55 -6.88 -38.22 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.45 Total: 1.84 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.38 Total: -12.58 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.57 Total: -23.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.24 Total: 16.86 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.34 -6.88 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.108 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds