Wall clock time and date at job start Tue Mar 31 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.77834 * 2 1 4 4 C 1.53230 * 109.62941 * 120.47895 * 2 1 3 5 5 C 1.52962 * 109.40093 * 65.09050 * 4 2 1 6 6 H 1.09001 * 109.35550 * 303.52891 * 5 4 2 7 7 C 1.50701 * 109.41372 * 183.70663 * 5 4 2 8 8 O 1.20827 * 119.99694 * 329.41875 * 7 5 4 9 9 O 1.34224 * 120.00331 * 149.41793 * 7 5 4 10 10 C 1.45198 * 117.00129 * 175.39358 * 9 7 5 11 11 C 1.53002 * 109.47182 * 182.66421 * 10 9 7 12 12 C 1.50704 * 115.54628 * 39.09095 * 11 10 9 13 13 H 1.07998 * 119.99999 * 268.96333 * 12 11 10 14 14 C 1.37878 * 120.00003 * 88.96934 * 12 11 10 15 15 N 1.31508 * 120.00307 * 178.98706 * 14 12 11 16 16 Si 1.86804 * 119.99889 * 358.98213 * 14 12 11 17 17 H 1.48498 * 109.47276 * 84.75356 * 16 14 12 18 18 H 1.48503 * 109.47124 * 204.75704 * 16 14 12 19 19 H 1.48498 * 109.46975 * 324.75160 * 16 14 12 20 20 C 1.52997 * 117.50061 * 253.38531 * 11 10 9 21 21 C 1.52994 * 117.50005 * 184.75944 * 11 10 9 22 22 C 1.52956 * 109.81794 * 63.59729 * 5 4 2 23 23 C 1.53234 * 109.40524 * 296.40003 * 22 5 4 24 24 C 1.51268 * 108.53442 * 54.63220 * 23 22 5 25 25 O 1.20760 * 120.85020 * 128.63291 * 24 23 22 26 26 H 1.09001 * 109.47149 * 180.47212 * 1 2 3 27 27 H 1.08997 * 109.46932 * 300.47303 * 1 2 3 28 28 H 1.09006 * 109.47078 * 60.47481 * 1 2 3 29 29 H 1.09003 * 109.47982 * 185.06781 * 4 2 1 30 30 H 1.08996 * 109.47818 * 305.11410 * 4 2 1 31 31 H 1.08998 * 109.46940 * 302.66586 * 10 9 7 32 32 H 1.08999 * 109.47013 * 62.66497 * 10 9 7 33 33 H 0.96997 * 120.00698 * 179.97438 * 15 14 12 34 34 H 1.08998 * 117.49844 * 359.97438 * 20 11 10 35 35 H 1.08997 * 117.50202 * 145.02147 * 20 11 10 36 36 H 1.09000 * 117.49833 * 214.98146 * 21 11 10 37 37 H 1.09004 * 117.49706 * 0.02562 * 21 11 10 38 38 H 1.09001 * 109.47867 * 176.42293 * 22 5 4 39 39 H 1.09002 * 109.49157 * 56.38993 * 22 5 4 40 40 H 1.08998 * 109.62464 * 294.91512 * 23 22 5 41 41 H 1.09007 * 109.62438 * 174.34269 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0447 -0.7320 1.2438 5 6 1.6431 -2.2061 1.1685 6 1 0.5610 -2.2806 1.0602 7 6 2.0694 -2.9067 2.4328 8 8 3.0502 -2.5311 3.0302 9 8 1.3596 -3.9478 2.8952 10 6 1.8848 -4.6387 4.0592 11 6 0.9829 -5.8277 4.3966 12 6 0.4461 -6.5924 3.2141 13 1 -0.5024 -6.3160 2.7778 14 6 1.1658 -7.6448 2.6893 15 7 0.6881 -8.3247 1.6700 16 14 2.8196 -8.1049 3.4261 17 1 2.6106 -9.0060 4.5877 18 1 3.6417 -8.7991 2.4026 19 1 3.5214 -6.8751 3.8736 20 6 0.0816 -5.7042 5.6267 21 6 1.3054 -6.6218 5.6640 22 6 2.3209 -2.8675 -0.0326 23 6 1.8165 -2.2158 -1.3245 24 6 2.0381 -0.7225 -1.2281 25 8 2.6064 -0.1227 -2.1087 26 1 -0.3633 -1.0276 0.0085 27 1 -0.3633 0.5212 0.8857 28 1 -0.3633 0.5065 -0.8943 29 1 3.1310 -0.6531 1.2886 30 1 1.6101 -0.2820 2.1363 31 1 2.8922 -4.9959 3.8458 32 1 1.9141 -3.9532 4.9061 33 1 1.1946 -9.0649 1.3005 34 1 0.1315 -4.7760 6.1960 35 1 -0.8999 -6.1759 5.5810 36 1 1.1289 -7.6972 5.6427 37 1 2.1598 -6.2968 6.2577 38 1 2.0820 -3.9309 -0.0447 39 1 3.4006 -2.7382 0.0423 40 1 0.7530 -2.4209 -1.4470 41 1 2.3694 -2.6137 -2.1754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783389545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:26 Heat of formation + Delta-G solvation = -133.115228 kcal Electronic energy + Delta-G solvation = -22546.753739 eV Core-core repulsion = 19198.332947 eV Total energy + Delta-G solvation = -3348.420792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89526 -40.82330 -38.92830 -37.73266 -36.91033 -34.20696 -33.61109 -31.18862 -28.95418 -27.50814 -26.99327 -24.24843 -23.77665 -23.34874 -21.53137 -21.01660 -19.50077 -18.74343 -18.44596 -17.57301 -17.40625 -16.87900 -16.45960 -16.39495 -15.73213 -15.63129 -15.17328 -14.84046 -14.76049 -14.45398 -14.21404 -13.99828 -13.77180 -13.41638 -13.15973 -13.07473 -12.86870 -12.74675 -12.60254 -12.24370 -12.16364 -12.03009 -11.96864 -11.70142 -11.59642 -11.49509 -11.28553 -10.92216 -10.64828 -10.38955 -10.29796 -8.26060 -6.30688 0.85967 1.17837 1.32898 1.37031 1.44750 1.79501 2.35865 3.01372 3.07182 3.12832 3.43865 3.54655 3.66442 3.87384 4.02429 4.07172 4.11990 4.17109 4.21731 4.26104 4.36930 4.39338 4.45653 4.54263 4.65241 4.77282 4.82123 4.85142 4.89501 4.95764 4.99329 5.05274 5.06544 5.17078 5.17730 5.40061 5.45418 5.64678 5.70584 6.34533 6.40679 6.73573 6.84730 7.36627 8.89291 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.004845 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.588685 B = 5777.799001 C = 6274.146616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 H 0.107 0.893 4 C -0.090 4.090 5 C -0.081 4.081 6 H 0.131 0.869 7 C 0.457 3.543 8 O -0.545 6.545 9 O -0.337 6.337 10 C 0.108 3.892 11 C -0.040 4.040 12 C -0.466 4.466 13 H 0.040 0.960 14 C 0.027 3.973 15 N -0.944 5.944 16 Si 0.926 3.074 17 H -0.260 1.260 18 H -0.300 1.300 19 H -0.250 1.250 20 C -0.155 4.155 21 C -0.189 4.189 22 C -0.104 4.104 23 C -0.161 4.161 24 C 0.371 3.629 25 O -0.494 6.494 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 14.546 -0.012 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 H 0.125 0.875 4 C -0.128 4.128 5 C -0.100 4.100 6 H 0.149 0.851 7 C 0.302 3.698 8 O -0.436 6.436 9 O -0.252 6.252 10 C 0.034 3.966 11 C -0.041 4.041 12 C -0.504 4.504 13 H 0.058 0.942 14 C -0.171 4.171 15 N -0.584 5.584 16 Si 0.752 3.248 17 H -0.184 1.184 18 H -0.227 1.227 19 H -0.174 1.174 20 C -0.192 4.192 21 C -0.226 4.226 22 C -0.142 4.142 23 C -0.198 4.198 24 C 0.249 3.751 25 O -0.370 6.370 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.883 14.788 -0.373 14.819 hybrid contribution 0.930 -0.899 0.161 1.303 sum 1.812 13.889 -0.212 14.008 Atomic orbital electron populations 1.21880 0.90555 1.03956 1.04026 1.21905 0.99582 1.00699 0.92491 0.87516 1.21481 1.02071 0.90916 0.98305 1.21225 1.05029 0.95195 0.88528 0.85087 1.24343 0.80609 0.78211 0.86658 1.90585 1.27868 1.65650 1.59522 1.86648 1.51187 1.41695 1.45641 1.22740 0.96286 0.92597 0.84966 1.19302 1.00072 0.95398 0.89329 1.20217 1.05360 1.12585 1.12227 0.94160 1.25657 1.00602 0.95897 0.94921 1.70002 1.40257 1.21932 1.26169 0.86130 0.80721 0.79585 0.78343 1.18439 1.22731 1.17393 1.22986 0.94730 1.00783 1.00696 1.23070 1.00528 0.98014 1.00965 1.21425 1.00416 1.00809 0.91538 1.22289 1.06013 0.92889 0.98604 1.25288 0.72486 0.91740 0.85584 1.90395 1.33858 1.71416 1.41289 0.90849 0.89606 0.91390 0.91258 0.88797 0.93359 0.90947 0.92669 0.87473 0.89598 0.89920 0.87867 0.90184 0.91352 0.85409 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.90 71.98 0.64 -1.23 16 2 C -0.13 -2.14 3.18 -11.28 -0.04 -2.18 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.09 -1.79 4.23 30.66 0.13 -1.66 16 5 C -0.08 -1.96 2.36 -11.57 -0.03 -1.99 16 6 H 0.13 2.70 6.39 -2.39 -0.02 2.69 16 7 C 0.46 15.56 7.00 71.24 0.50 16.06 16 8 O -0.54 -20.57 16.01 21.96 0.35 -20.22 16 9 O -0.34 -13.58 9.59 -51.36 -0.49 -14.07 16 10 C 0.11 4.39 5.41 71.98 0.39 4.78 16 11 C -0.04 -1.75 1.28 -52.93 -0.07 -1.82 16 12 C -0.47 -25.21 8.82 25.60 0.23 -24.99 16 13 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 14 C 0.03 1.50 5.47 84.66 0.46 1.96 16 15 N -0.94 -56.73 13.96 21.45 0.30 -56.43 16 16 Si 0.93 43.22 24.95 68.60 1.71 44.93 16 17 H -0.26 -11.39 6.92 99.48 0.69 -10.70 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.25 -10.97 5.62 99.48 0.56 -10.41 16 20 C -0.16 -5.59 9.88 30.59 0.30 -5.29 16 21 C -0.19 -7.15 7.59 30.59 0.23 -6.92 16 22 C -0.10 -2.50 5.20 30.66 0.16 -2.34 16 23 C -0.16 -3.13 5.90 30.11 0.18 -2.95 16 24 C 0.37 7.96 6.06 29.46 0.18 8.14 16 25 O -0.49 -14.02 17.89 -1.45 -0.03 -14.05 16 26 H 0.07 0.90 5.97 -2.39 -0.01 0.89 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 1.56 7.98 -2.39 -0.02 1.54 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.05 2.07 6.51 -2.39 -0.02 2.06 16 32 H 0.07 2.58 7.94 -2.39 -0.02 2.56 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.08 3.34 6.91 -2.39 -0.02 3.32 16 37 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.13 1.96 7.82 -2.39 -0.02 1.94 16 41 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -68.83 330.55 5.96 -62.87 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.85 Total: 17.39 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 3.27 Total: -20.42 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.43 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.17 Total: -48.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.71 Total: 44.93 kcal Total: -68.83 5.96 -62.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.245 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds