Wall clock time and date at job start Tue Mar 31 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.00687 * 2 1 4 4 C 1.51698 * 110.12593 * 121.34463 * 2 1 3 5 5 O 1.20760 * 126.31186 * 298.90693 * 4 2 1 6 6 C 1.51842 * 107.34153 * 118.80537 * 4 2 1 7 7 C 1.54893 * 104.43337 * 23.91510 * 6 4 2 8 8 C 1.54278 * 109.98726 * 238.69787 * 2 1 3 9 9 H 1.08995 * 110.56750 * 336.25074 * 8 2 1 10 10 C 1.53000 * 110.56709 * 98.96450 * 8 2 1 11 11 C 1.50698 * 109.47440 * 182.94786 * 10 8 2 12 12 O 1.20824 * 119.99469 * 359.97438 * 11 10 8 13 13 O 1.34224 * 120.00536 * 180.02562 * 11 10 8 14 14 C 1.45201 * 117.00503 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47327 * 179.97438 * 14 13 11 16 16 C 1.50706 * 115.54758 * 65.10892 * 15 14 13 17 17 H 1.07998 * 119.99910 * 266.10910 * 16 15 14 18 18 C 1.37877 * 119.99792 * 86.11047 * 16 15 14 19 19 N 1.31515 * 119.99968 * 353.70571 * 18 16 15 20 20 Si 1.86799 * 120.00003 * 173.70206 * 18 16 15 21 21 H 1.48504 * 109.47178 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46768 * 120.00035 * 20 18 16 23 23 H 1.48494 * 109.47201 * 240.00184 * 20 18 16 24 24 C 1.52999 * 117.50188 * 279.44267 * 15 14 13 25 25 C 1.52994 * 117.50060 * 210.77722 * 15 14 13 26 26 H 1.09000 * 109.47275 * 181.29374 * 1 2 3 27 27 H 1.09001 * 109.47427 * 301.30344 * 1 2 3 28 28 H 1.09000 * 109.46883 * 61.29952 * 1 2 3 29 29 H 1.09000 * 110.44130 * 265.17555 * 6 4 2 30 30 H 1.08999 * 110.43928 * 142.65125 * 6 4 2 31 31 H 1.09001 * 110.82988 * 204.16061 * 7 6 4 32 32 H 1.08996 * 111.00134 * 80.66584 * 7 6 4 33 33 H 1.09001 * 109.47236 * 302.94845 * 10 8 2 34 34 H 1.09008 * 109.46945 * 62.94658 * 10 8 2 35 35 H 1.08998 * 109.46808 * 300.00365 * 14 13 11 36 36 H 1.09007 * 109.46511 * 59.99873 * 14 13 11 37 37 H 0.97004 * 119.99832 * 179.97438 * 19 18 16 38 38 H 1.09006 * 117.49683 * 359.97438 * 24 15 14 39 39 H 1.08998 * 117.50030 * 145.02131 * 24 15 14 40 40 H 1.08999 * 117.50242 * 214.98066 * 25 15 14 41 41 H 1.09004 * 117.49947 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0519 -0.7409 1.2165 5 8 1.8564 -0.4469 2.3713 6 6 2.8634 -1.9217 0.7135 7 6 3.3046 -1.5076 -0.7124 8 6 2.0573 -0.7533 -1.2388 9 1 1.3104 -1.4573 -1.6056 10 6 2.4508 0.2329 -2.3404 11 6 2.8933 -0.5294 -3.5627 12 8 2.8943 -1.7376 -3.5534 13 8 3.2872 0.1337 -4.6612 14 6 3.7007 -0.6654 -5.8009 15 6 4.1112 0.2582 -6.9494 16 6 5.3274 1.1109 -6.6947 17 1 5.2127 2.1152 -6.3145 18 6 6.5864 0.6088 -6.9472 19 7 6.7348 -0.6518 -7.2913 20 14 8.0814 1.7192 -6.8006 21 1 7.6483 3.0825 -6.4017 22 1 9.0046 1.1732 -5.7734 23 1 8.7799 1.7844 -8.1094 24 6 2.9951 0.8578 -7.8073 25 6 3.8889 -0.2471 -8.3763 26 1 -0.3634 -1.0274 0.0232 27 1 -0.3634 0.5339 0.8781 28 1 -0.3633 0.4935 -0.9014 29 1 2.2461 -2.8192 0.6755 30 1 3.7338 -2.0838 1.3493 31 1 3.5134 -2.3855 -1.3237 32 1 4.1709 -0.8471 -0.6769 33 1 1.5936 0.8574 -2.5922 34 1 3.2684 0.8627 -1.9892 35 1 4.5466 -1.2918 -5.5177 36 1 2.8721 -1.2971 -6.1214 37 1 7.6206 -1.0049 -7.4692 38 1 1.9684 0.5938 -7.5536 39 1 3.1408 1.8687 -8.1878 40 1 4.6221 0.0375 -9.1310 41 1 3.4506 -1.2378 -8.4968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796730203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:02 Heat of formation + Delta-G solvation = -121.264696 kcal Electronic energy + Delta-G solvation = -21923.785569 eV Core-core repulsion = 18575.878655 eV Total energy + Delta-G solvation = -3347.906914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45494 -39.57310 -37.25563 -36.49877 -35.19145 -31.99239 -31.74772 -31.02476 -27.09023 -25.52510 -24.93939 -24.66760 -21.41224 -21.09513 -19.90209 -19.29282 -19.27206 -17.03326 -16.74553 -16.12988 -15.99005 -15.69086 -15.10171 -14.69329 -14.61306 -14.23045 -13.92217 -13.65416 -13.25172 -13.19479 -12.74117 -12.41644 -12.28256 -12.00879 -11.81515 -11.65443 -11.50394 -11.20762 -11.03357 -10.87687 -10.86432 -10.77488 -10.54614 -10.31987 -10.03304 -9.87735 -9.62838 -9.47921 -8.85155 -8.50432 -8.24364 -6.10503 -4.15760 1.72461 2.73625 3.24188 3.27670 3.33753 3.37786 3.87549 4.26783 4.36136 4.49774 4.57803 4.92534 4.99328 5.05915 5.10548 5.19362 5.22167 5.26558 5.32807 5.49031 5.55208 5.61581 5.73162 5.74522 5.76552 5.89218 5.95259 6.09572 6.19159 6.21383 6.29974 6.49563 6.63083 6.70231 7.00061 7.23998 7.28292 7.33502 7.44925 7.83115 8.32544 8.42556 8.86429 9.50390 10.98848 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.003854 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.277883 B = 7262.917224 C = 7844.515364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.151 4.151 3 H 0.107 0.893 4 C 0.375 3.625 5 O -0.449 6.449 6 C -0.182 4.182 7 C -0.118 4.118 8 C -0.073 4.073 9 H 0.095 0.905 10 C -0.109 4.109 11 C 0.453 3.547 12 O -0.522 6.522 13 O -0.339 6.339 14 C 0.117 3.883 15 C 0.037 3.963 16 C -0.489 4.489 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.891 3.109 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 -0.342 11.291 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 H 0.125 0.875 4 C 0.250 3.750 5 O -0.322 6.322 6 C -0.220 4.220 7 C -0.155 4.155 8 C -0.091 4.091 9 H 0.113 0.887 10 C -0.147 4.147 11 C 0.296 3.704 12 O -0.413 6.413 13 O -0.254 6.254 14 C 0.044 3.956 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.082 0.918 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.243 4.243 25 C -0.182 4.182 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.618 -0.674 11.802 15.240 hybrid contribution 0.991 0.297 -0.203 1.054 sum -8.627 -0.376 11.599 14.461 Atomic orbital electron populations 1.21685 0.92346 1.02602 1.02890 1.22399 0.98111 1.01676 0.94815 0.87527 1.25089 0.75960 0.85084 0.88873 1.90401 1.51991 1.68010 1.21782 1.22929 1.01433 0.98886 0.98758 1.22586 0.97109 1.01916 0.93899 1.21813 0.98602 0.96417 0.92298 0.88710 1.21401 1.03845 0.98553 0.90873 1.23465 0.74441 0.87212 0.85245 1.90596 1.51293 1.15735 1.83631 1.86519 1.74111 1.42137 1.22623 1.22882 0.97239 0.92565 0.82961 1.18789 0.94123 0.96798 0.86675 1.20428 0.88670 0.99328 1.44281 0.91824 1.25012 0.98878 0.94920 0.94625 1.70010 1.22965 1.12718 1.46083 0.86544 0.82744 0.81086 0.77727 1.19575 1.21021 1.20901 1.23012 0.94579 0.98005 1.08677 1.22534 1.01306 0.95581 0.98822 0.92197 0.91950 0.91181 0.87741 0.89029 0.88832 0.90710 0.87809 0.87646 0.90658 0.94383 0.92955 0.91582 0.90070 0.89427 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.75 16 2 C -0.15 -1.34 3.02 -90.61 -0.27 -1.61 16 3 H 0.11 0.87 7.83 -51.93 -0.41 0.46 16 4 C 0.37 3.95 7.20 -27.98 -0.20 3.75 16 5 O -0.45 -6.13 17.99 6.00 0.11 -6.02 16 6 C -0.18 -1.66 6.72 -26.32 -0.18 -1.84 16 7 C -0.12 -1.24 5.73 -24.69 -0.14 -1.38 16 8 C -0.07 -0.74 2.01 -88.91 -0.18 -0.91 16 9 H 0.09 0.99 7.67 -51.93 -0.40 0.60 16 10 C -0.11 -1.26 5.17 -27.88 -0.14 -1.40 16 11 C 0.45 7.76 7.76 36.00 0.28 8.04 16 12 O -0.52 -9.95 14.41 -18.75 -0.27 -10.22 16 13 O -0.34 -7.00 10.16 -39.24 -0.40 -7.40 16 14 C 0.12 2.67 5.29 37.16 0.20 2.87 16 15 C 0.04 0.89 1.62 -155.66 -0.25 0.64 16 16 C -0.49 -13.06 8.78 -34.44 -0.30 -13.36 16 17 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 18 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 19 N -0.88 -24.41 12.88 55.43 0.71 -23.69 16 20 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 25 C -0.14 -3.30 9.37 -26.69 -0.25 -3.55 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.14 7.24 -51.93 -0.38 0.77 16 32 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.11 8.06 -51.92 -0.42 0.69 16 35 H 0.08 1.91 8.13 -51.93 -0.42 1.49 16 36 H 0.04 0.82 8.09 -51.92 -0.42 0.40 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -30.32 345.94 -7.75 -38.07 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.63 Total: 0.81 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.47 Total: -12.40 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.71 Total: -23.69 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.56 Total: -23.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.32 -7.75 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796730203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.190 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds