Wall clock time and date at job start Tue Mar 31 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.00687 * 2 1 4 4 C 1.51698 * 110.12593 * 121.34463 * 2 1 3 5 5 O 1.20760 * 126.31186 * 298.90693 * 4 2 1 6 6 C 1.51842 * 107.34153 * 118.80537 * 4 2 1 7 7 C 1.54893 * 104.43337 * 23.91510 * 6 4 2 8 8 C 1.54278 * 109.98726 * 238.69787 * 2 1 3 9 9 H 1.08995 * 110.56750 * 336.25074 * 8 2 1 10 10 C 1.53000 * 110.56709 * 98.96450 * 8 2 1 11 11 C 1.50698 * 109.47440 * 182.94786 * 10 8 2 12 12 O 1.20824 * 119.99469 * 359.97438 * 11 10 8 13 13 O 1.34224 * 120.00536 * 180.02562 * 11 10 8 14 14 C 1.45201 * 117.00503 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47327 * 179.97438 * 14 13 11 16 16 C 1.50706 * 115.54758 * 65.10892 * 15 14 13 17 17 H 1.07998 * 119.99910 * 266.10910 * 16 15 14 18 18 C 1.37877 * 119.99792 * 86.11047 * 16 15 14 19 19 N 1.31515 * 119.99968 * 353.70571 * 18 16 15 20 20 Si 1.86799 * 120.00003 * 173.70206 * 18 16 15 21 21 H 1.48504 * 109.47178 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46768 * 120.00035 * 20 18 16 23 23 H 1.48494 * 109.47201 * 240.00184 * 20 18 16 24 24 C 1.52999 * 117.50188 * 279.44267 * 15 14 13 25 25 C 1.52994 * 117.50060 * 210.77722 * 15 14 13 26 26 H 1.09000 * 109.47275 * 181.29374 * 1 2 3 27 27 H 1.09001 * 109.47427 * 301.30344 * 1 2 3 28 28 H 1.09000 * 109.46883 * 61.29952 * 1 2 3 29 29 H 1.09000 * 110.44130 * 265.17555 * 6 4 2 30 30 H 1.08999 * 110.43928 * 142.65125 * 6 4 2 31 31 H 1.09001 * 110.82988 * 204.16061 * 7 6 4 32 32 H 1.08996 * 111.00134 * 80.66584 * 7 6 4 33 33 H 1.09001 * 109.47236 * 302.94845 * 10 8 2 34 34 H 1.09008 * 109.46945 * 62.94658 * 10 8 2 35 35 H 1.08998 * 109.46808 * 300.00365 * 14 13 11 36 36 H 1.09007 * 109.46511 * 59.99873 * 14 13 11 37 37 H 0.97004 * 119.99832 * 179.97438 * 19 18 16 38 38 H 1.09006 * 117.49683 * 359.97438 * 24 15 14 39 39 H 1.08998 * 117.50030 * 145.02131 * 24 15 14 40 40 H 1.08999 * 117.50242 * 214.98066 * 25 15 14 41 41 H 1.09004 * 117.49947 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0519 -0.7409 1.2165 5 8 1.8564 -0.4469 2.3713 6 6 2.8634 -1.9217 0.7135 7 6 3.3046 -1.5076 -0.7124 8 6 2.0573 -0.7533 -1.2388 9 1 1.3104 -1.4573 -1.6056 10 6 2.4508 0.2329 -2.3404 11 6 2.8933 -0.5294 -3.5627 12 8 2.8943 -1.7376 -3.5534 13 8 3.2872 0.1337 -4.6612 14 6 3.7007 -0.6654 -5.8009 15 6 4.1112 0.2582 -6.9494 16 6 5.3274 1.1109 -6.6947 17 1 5.2127 2.1152 -6.3145 18 6 6.5864 0.6088 -6.9472 19 7 6.7348 -0.6518 -7.2913 20 14 8.0814 1.7192 -6.8006 21 1 7.6483 3.0825 -6.4017 22 1 9.0046 1.1732 -5.7734 23 1 8.7799 1.7844 -8.1094 24 6 2.9951 0.8578 -7.8073 25 6 3.8889 -0.2471 -8.3763 26 1 -0.3634 -1.0274 0.0232 27 1 -0.3634 0.5339 0.8781 28 1 -0.3633 0.4935 -0.9014 29 1 2.2461 -2.8192 0.6755 30 1 3.7338 -2.0838 1.3493 31 1 3.5134 -2.3855 -1.3237 32 1 4.1709 -0.8471 -0.6769 33 1 1.5936 0.8574 -2.5922 34 1 3.2684 0.8627 -1.9892 35 1 4.5466 -1.2918 -5.5177 36 1 2.8721 -1.2971 -6.1214 37 1 7.6206 -1.0049 -7.4692 38 1 1.9684 0.5938 -7.5536 39 1 3.1408 1.8687 -8.1878 40 1 4.6221 0.0375 -9.1310 41 1 3.4506 -1.2378 -8.4968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796730203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:01 Heat of formation + Delta-G solvation = -136.397034 kcal Electronic energy + Delta-G solvation = -21924.441756 eV Core-core repulsion = 18575.878655 eV Total energy + Delta-G solvation = -3348.563101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57263 -40.76567 -38.69834 -37.76396 -36.74373 -34.00970 -32.49737 -31.98245 -28.73497 -27.36883 -26.00760 -25.51395 -23.00006 -22.33730 -21.17421 -21.01219 -20.11173 -18.46738 -18.27898 -17.43238 -17.31194 -16.73934 -16.60491 -16.39031 -15.66053 -15.48613 -15.08528 -14.78951 -14.55532 -14.21747 -14.00060 -13.57273 -13.48964 -13.38469 -13.13792 -12.92106 -12.83679 -12.68735 -12.36633 -12.33552 -12.07672 -12.00945 -11.73486 -11.66378 -11.54143 -11.52937 -11.22780 -10.75100 -10.48486 -10.37655 -10.05981 -8.13167 -6.24007 0.89757 1.37570 1.40937 1.44315 1.54960 1.91108 2.43095 3.09146 3.16265 3.38677 3.50042 3.65408 3.74434 4.01294 4.17542 4.20210 4.23505 4.32247 4.41248 4.47315 4.48967 4.53360 4.54726 4.68672 4.76503 4.87724 4.90263 4.93935 4.98304 5.00967 5.05404 5.20259 5.21508 5.28144 5.38547 5.50109 5.60280 5.75970 5.83727 6.37442 6.46312 6.81798 6.95061 7.44965 8.95799 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.003854 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.277883 B = 7262.917224 C = 7844.515364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 H 0.121 0.879 4 C 0.378 3.622 5 O -0.483 6.483 6 C -0.177 4.177 7 C -0.120 4.120 8 C -0.067 4.067 9 H 0.093 0.907 10 C -0.100 4.100 11 C 0.447 3.553 12 O -0.545 6.545 13 O -0.352 6.352 14 C 0.130 3.870 15 C 0.004 3.996 16 C -0.503 4.503 17 H 0.056 0.944 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.950 3.050 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.177 4.177 25 C -0.149 4.149 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 0.841 11.941 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 H 0.139 0.861 4 C 0.255 3.745 5 O -0.358 6.358 6 C -0.214 4.214 7 C -0.158 4.158 8 C -0.085 4.085 9 H 0.111 0.889 10 C -0.137 4.137 11 C 0.292 3.708 12 O -0.436 6.436 13 O -0.268 6.268 14 C 0.057 3.943 15 C 0.004 3.996 16 C -0.540 4.540 17 H 0.074 0.926 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.214 4.214 25 C -0.187 4.187 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.673 0.515 12.451 16.407 hybrid contribution 1.286 -0.110 -0.384 1.347 sum -9.387 0.406 12.067 15.294 Atomic orbital electron populations 1.21715 0.91283 1.02956 1.03581 1.22328 0.98851 1.01868 0.92943 0.86095 1.25340 0.75255 0.85160 0.88709 1.90399 1.53409 1.68916 1.23100 1.22909 1.01738 0.98991 0.97773 1.22545 0.97536 1.01248 0.94427 1.21763 0.98247 0.96186 0.92324 0.88889 1.21580 1.05354 0.98579 0.88219 1.24586 0.73296 0.87442 0.85442 1.90589 1.52121 1.17044 1.83850 1.86522 1.74720 1.42362 1.23151 1.22424 0.96156 0.92081 0.83680 1.18897 0.95072 0.98018 0.87660 1.20676 0.90015 0.99299 1.44037 0.92603 1.25698 1.01405 0.96038 0.94509 1.70114 1.23397 1.14083 1.47162 0.85621 0.79521 0.79618 0.77624 1.18879 1.20977 1.20572 1.23019 0.94977 0.97604 1.05821 1.22467 1.01661 0.96884 0.97646 0.92076 0.92068 0.89715 0.86471 0.88470 0.90873 0.90730 0.84856 0.86097 0.94348 0.93455 0.93064 0.88977 0.89677 0.91369 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.09 71.98 0.65 -1.14 16 2 C -0.14 -2.13 3.02 -10.79 -0.03 -2.16 16 3 H 0.12 1.55 7.83 -2.39 -0.02 1.53 16 4 C 0.38 7.32 7.20 29.79 0.21 7.53 16 5 O -0.48 -12.64 17.99 -1.45 -0.03 -12.66 16 6 C -0.18 -2.98 6.72 30.86 0.21 -2.77 16 7 C -0.12 -2.40 5.73 31.92 0.18 -2.21 16 8 C -0.07 -1.20 2.01 -9.68 -0.02 -1.22 16 9 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 10 C -0.10 -2.05 5.17 29.85 0.15 -1.90 16 11 C 0.45 14.84 7.76 71.24 0.55 15.39 16 12 O -0.54 -20.65 14.41 21.97 0.32 -20.33 16 13 O -0.35 -14.29 10.16 -51.36 -0.52 -14.81 16 14 C 0.13 6.01 5.29 71.98 0.38 6.39 16 15 C 0.00 0.19 1.62 -52.93 -0.09 0.11 16 16 C -0.50 -26.88 8.78 25.60 0.22 -26.65 16 17 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 18 C 0.02 1.28 5.38 84.65 0.46 1.73 16 19 N -0.91 -51.22 12.88 21.45 0.28 -50.94 16 20 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.18 -7.22 9.96 30.62 0.30 -6.92 16 25 C -0.15 -6.74 9.37 30.62 0.29 -6.45 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.78 7.24 -2.39 -0.02 1.77 16 32 H 0.07 1.48 7.99 -2.39 -0.02 1.46 16 33 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 2.18 8.06 -2.38 -0.02 2.16 16 35 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.05 2.04 8.09 -2.38 -0.02 2.02 16 37 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.09 3.26 8.14 -2.38 -0.02 3.25 16 39 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -65.62 345.94 6.55 -59.06 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.00 Total: 15.46 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.48 Total: -20.28 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.28 Total: -50.94 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.23 Total: -47.81 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.62 6.55 -59.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796730203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.333 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds