Wall clock time and date at job start Tue Mar 31 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00538 * 2 1 4 4 C 1.51449 * 109.98535 * 121.29174 * 2 1 3 5 5 O 1.20763 * 126.33641 * 299.68227 * 4 2 1 6 6 C 1.51845 * 107.31793 * 119.70613 * 4 2 1 7 7 C 1.54888 * 104.42879 * 336.20757 * 6 4 2 8 8 C 1.54282 * 109.98527 * 238.70891 * 2 1 3 9 9 H 1.08997 * 110.69703 * 145.14803 * 8 2 1 10 10 C 1.52992 * 110.56815 * 22.34113 * 8 2 1 11 11 C 1.50703 * 109.47273 * 179.21883 * 10 8 2 12 12 O 1.20822 * 119.99978 * 359.97438 * 11 10 8 13 13 O 1.34228 * 120.00104 * 179.72192 * 11 10 8 14 14 C 1.45196 * 117.00009 * 180.27240 * 13 11 10 15 15 C 1.53001 * 109.47373 * 180.02562 * 14 13 11 16 16 C 1.50701 * 115.54920 * 65.10539 * 15 14 13 17 17 H 1.07991 * 120.00475 * 266.11483 * 16 15 14 18 18 C 1.37883 * 119.99525 * 86.11615 * 16 15 14 19 19 N 1.31515 * 120.00336 * 353.70429 * 18 16 15 20 20 Si 1.86803 * 119.99723 * 173.70452 * 18 16 15 21 21 H 1.48500 * 109.47054 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46802 * 120.00065 * 20 18 16 23 23 H 1.48504 * 109.46929 * 239.99660 * 20 18 16 24 24 C 1.53006 * 117.49876 * 279.43937 * 15 14 13 25 25 C 1.53004 * 117.49803 * 210.77886 * 15 14 13 26 26 H 1.09000 * 109.47409 * 181.29312 * 1 2 3 27 27 H 1.09000 * 109.47193 * 301.29702 * 1 2 3 28 28 H 1.09002 * 109.47025 * 61.28835 * 1 2 3 29 29 H 1.08999 * 110.43885 * 217.47257 * 6 4 2 30 30 H 1.08994 * 110.54718 * 94.99791 * 6 4 2 31 31 H 1.08996 * 110.83726 * 279.41123 * 7 6 4 32 32 H 1.09006 * 110.82635 * 155.83894 * 7 6 4 33 33 H 1.08996 * 109.47606 * 59.21847 * 10 8 2 34 34 H 1.09009 * 109.47491 * 299.21600 * 10 8 2 35 35 H 1.09004 * 109.47284 * 300.00601 * 14 13 11 36 36 H 1.08997 * 109.47250 * 60.00248 * 14 13 11 37 37 H 0.96993 * 120.00139 * 180.02562 * 19 18 16 38 38 H 1.09005 * 117.49338 * 359.97438 * 24 15 14 39 39 H 1.08997 * 117.49718 * 145.02123 * 24 15 14 40 40 H 1.09004 * 117.49646 * 214.97831 * 25 15 14 41 41 H 1.08994 * 117.50048 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0476 -0.7393 1.2162 5 8 1.8394 -0.4518 2.3706 6 6 2.8772 -1.9083 0.7155 7 6 2.3365 -2.1827 -0.7098 8 6 2.0573 -0.7531 -1.2390 9 1 2.9753 -0.2946 -1.6066 10 6 0.9959 -0.7853 -2.3404 11 6 1.5427 -1.5087 -3.5441 12 8 2.6663 -1.9525 -3.5232 13 8 0.7798 -1.6645 -4.6374 14 6 1.3696 -2.3767 -5.7568 15 6 0.3583 -2.4537 -6.9023 16 6 -0.0220 -1.1343 -7.5233 17 1 -0.8964 -0.6052 -7.1743 18 6 0.7465 -0.6026 -8.5371 19 7 1.8771 -1.1815 -8.8781 20 14 0.1818 0.9401 -9.4263 21 1 -1.1135 1.3927 -8.8584 22 1 1.1981 2.0095 -9.2562 23 1 0.0118 0.6442 -10.8716 24 6 -0.7230 -3.5329 -6.8187 25 6 0.4243 -3.6746 -7.8221 26 1 -0.3634 -1.0274 0.0232 27 1 -0.3633 0.5338 0.8781 28 1 -0.3633 0.4937 -0.9013 29 1 2.7300 -2.7802 1.3529 30 1 3.9328 -1.6396 0.6770 31 1 1.4177 -2.7677 -0.6700 32 1 3.0890 -2.6820 -1.3203 33 1 0.7303 0.2344 -2.6191 34 1 0.1096 -1.3049 -1.9759 35 1 2.2612 -1.8483 -6.0945 36 1 1.6416 -3.3846 -5.4435 37 1 2.4179 -0.8073 -9.5910 38 1 -0.7136 -4.1883 -5.9478 39 1 -1.7093 -3.2887 -7.2133 40 1 0.1923 -3.5235 -8.8764 41 1 1.1879 -4.4231 -7.6109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796730206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:06 Heat of formation + Delta-G solvation = -117.215278 kcal Electronic energy + Delta-G solvation = -22017.619136 eV Core-core repulsion = 18669.887818 eV Total energy + Delta-G solvation = -3347.731318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56814 -39.56877 -37.33638 -36.53856 -35.19188 -31.99623 -31.92583 -30.53906 -27.07679 -25.59398 -25.21837 -24.81117 -21.40751 -21.06912 -19.84750 -19.29364 -18.81066 -17.32529 -16.65977 -16.38528 -15.89415 -15.70924 -15.09715 -14.99775 -14.63533 -14.08165 -13.92458 -13.50793 -13.26104 -13.02885 -12.75690 -12.60684 -12.27065 -11.99087 -11.88083 -11.64012 -11.51131 -11.17049 -11.03194 -10.91057 -10.82418 -10.66042 -10.54873 -10.32031 -9.98271 -9.87254 -9.62250 -9.50973 -8.85026 -8.50318 -8.24161 -6.10354 -4.15650 1.70631 2.74438 3.24406 3.28589 3.33772 3.37787 3.86795 4.24663 4.36204 4.48561 4.58751 4.88535 4.99509 5.05045 5.10526 5.18716 5.21245 5.28467 5.37405 5.47129 5.52240 5.64160 5.66687 5.74029 5.81127 5.91061 5.95466 6.08900 6.15387 6.21679 6.30227 6.49730 6.63334 6.70369 7.00157 7.24488 7.26836 7.33731 7.45214 7.83245 8.32842 8.43142 8.86562 9.50469 10.99004 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.003754 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.266874 B = 7456.933868 C = 7901.127778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 H 0.104 0.896 4 C 0.375 3.625 5 O -0.449 6.449 6 C -0.184 4.184 7 C -0.116 4.116 8 C -0.073 4.073 9 H 0.094 0.906 10 C -0.110 4.110 11 C 0.452 3.548 12 O -0.522 6.522 13 O -0.339 6.339 14 C 0.117 3.883 15 C 0.037 3.963 16 C -0.489 4.489 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -0.241 14.814 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 H 0.122 0.878 4 C 0.250 3.750 5 O -0.322 6.322 6 C -0.221 4.221 7 C -0.153 4.153 8 C -0.091 4.091 9 H 0.113 0.887 10 C -0.147 4.147 11 C 0.295 3.705 12 O -0.413 6.413 13 O -0.254 6.254 14 C 0.043 3.957 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.082 0.918 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.243 4.243 25 C -0.182 4.182 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.136 -0.220 15.246 15.248 hybrid contribution 0.054 0.727 -0.796 1.079 sum -0.082 0.507 14.450 14.459 Atomic orbital electron populations 1.21809 0.92343 1.02764 1.03230 1.22314 0.98385 1.01403 0.94786 0.87758 1.25037 0.76491 0.84539 0.88902 1.90403 1.52229 1.67691 1.21839 1.22940 1.01520 0.98905 0.98748 1.22582 1.02319 0.96531 0.93879 1.21752 0.98570 0.96499 0.92317 0.88737 1.21508 0.99921 1.02407 0.90911 1.23537 0.84322 0.77752 0.84879 1.90591 1.20303 1.47469 1.82938 1.86518 1.45790 1.69466 1.23609 1.22877 0.97671 0.92720 0.82390 1.18791 0.93793 0.90925 0.92860 1.20428 1.11221 1.03378 1.17682 0.91816 1.25018 0.94584 0.97123 0.96735 1.70007 1.12005 1.40147 1.29621 0.86540 0.78920 0.83016 0.79604 1.19568 1.21021 1.20913 1.23013 0.95177 1.05218 1.00866 1.22536 0.98793 1.00256 0.96661 0.91969 0.91991 0.90554 0.89095 0.87689 0.90983 0.88803 0.87502 0.87596 0.90685 0.94380 0.92954 0.91585 0.90077 0.89427 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.95 37.16 0.30 -0.88 16 2 C -0.15 -1.32 3.36 -90.73 -0.30 -1.63 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.38 3.86 7.18 -28.10 -0.20 3.66 16 5 O -0.45 -6.03 17.99 6.00 0.11 -5.92 16 6 C -0.18 -1.59 6.72 -26.32 -0.18 -1.77 16 7 C -0.12 -1.15 5.65 -24.69 -0.14 -1.29 16 8 C -0.07 -0.73 2.42 -88.91 -0.22 -0.95 16 9 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 10 C -0.11 -1.27 4.01 -27.89 -0.11 -1.38 16 11 C 0.45 7.73 7.74 36.01 0.28 8.01 16 12 O -0.52 -9.94 14.29 -18.75 -0.27 -10.21 16 13 O -0.34 -6.99 10.16 -39.25 -0.40 -7.39 16 14 C 0.12 2.67 5.28 37.16 0.20 2.87 16 15 C 0.04 0.89 1.62 -155.65 -0.25 0.64 16 16 C -0.49 -13.05 8.78 -34.44 -0.30 -13.35 16 17 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 18 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 19 N -0.88 -24.43 12.88 55.43 0.71 -23.71 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 25 C -0.14 -3.30 9.37 -26.69 -0.25 -3.55 16 26 H 0.06 0.49 7.63 -51.93 -0.40 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.56 6.63 -51.93 -0.34 0.21 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 32 H 0.09 1.08 7.12 -51.93 -0.37 0.71 16 33 H 0.11 1.10 7.59 -51.93 -0.39 0.71 16 34 H 0.11 1.04 6.66 -51.92 -0.35 0.69 16 35 H 0.07 1.91 8.13 -51.93 -0.42 1.49 16 36 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -30.35 340.79 -7.73 -38.08 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.45 Total: 0.91 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.55 Total: -12.52 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.71 Total: -23.71 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.56 Total: -23.52 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.35 -7.73 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796730206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.136 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds