Wall clock time and date at job start Tue Mar 31 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00538 * 2 1 4 4 C 1.51449 * 109.98535 * 121.29174 * 2 1 3 5 5 O 1.20763 * 126.33641 * 299.68227 * 4 2 1 6 6 C 1.51845 * 107.31793 * 119.70613 * 4 2 1 7 7 C 1.54888 * 104.42879 * 336.20757 * 6 4 2 8 8 C 1.54282 * 109.98527 * 238.70891 * 2 1 3 9 9 H 1.08997 * 110.69703 * 145.14803 * 8 2 1 10 10 C 1.52992 * 110.56815 * 22.34113 * 8 2 1 11 11 C 1.50703 * 109.47273 * 179.21883 * 10 8 2 12 12 O 1.20822 * 119.99978 * 359.97438 * 11 10 8 13 13 O 1.34228 * 120.00104 * 179.72192 * 11 10 8 14 14 C 1.45196 * 117.00009 * 180.27240 * 13 11 10 15 15 C 1.53001 * 109.47373 * 180.02562 * 14 13 11 16 16 C 1.50701 * 115.54920 * 65.10539 * 15 14 13 17 17 H 1.07991 * 120.00475 * 266.11483 * 16 15 14 18 18 C 1.37883 * 119.99525 * 86.11615 * 16 15 14 19 19 N 1.31515 * 120.00336 * 353.70429 * 18 16 15 20 20 Si 1.86803 * 119.99723 * 173.70452 * 18 16 15 21 21 H 1.48500 * 109.47054 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46802 * 120.00065 * 20 18 16 23 23 H 1.48504 * 109.46929 * 239.99660 * 20 18 16 24 24 C 1.53006 * 117.49876 * 279.43937 * 15 14 13 25 25 C 1.53004 * 117.49803 * 210.77886 * 15 14 13 26 26 H 1.09000 * 109.47409 * 181.29312 * 1 2 3 27 27 H 1.09000 * 109.47193 * 301.29702 * 1 2 3 28 28 H 1.09002 * 109.47025 * 61.28835 * 1 2 3 29 29 H 1.08999 * 110.43885 * 217.47257 * 6 4 2 30 30 H 1.08994 * 110.54718 * 94.99791 * 6 4 2 31 31 H 1.08996 * 110.83726 * 279.41123 * 7 6 4 32 32 H 1.09006 * 110.82635 * 155.83894 * 7 6 4 33 33 H 1.08996 * 109.47606 * 59.21847 * 10 8 2 34 34 H 1.09009 * 109.47491 * 299.21600 * 10 8 2 35 35 H 1.09004 * 109.47284 * 300.00601 * 14 13 11 36 36 H 1.08997 * 109.47250 * 60.00248 * 14 13 11 37 37 H 0.96993 * 120.00139 * 180.02562 * 19 18 16 38 38 H 1.09005 * 117.49338 * 359.97438 * 24 15 14 39 39 H 1.08997 * 117.49718 * 145.02123 * 24 15 14 40 40 H 1.09004 * 117.49646 * 214.97831 * 25 15 14 41 41 H 1.08994 * 117.50048 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0476 -0.7393 1.2162 5 8 1.8394 -0.4518 2.3706 6 6 2.8772 -1.9083 0.7155 7 6 2.3365 -2.1827 -0.7098 8 6 2.0573 -0.7531 -1.2390 9 1 2.9753 -0.2946 -1.6066 10 6 0.9959 -0.7853 -2.3404 11 6 1.5427 -1.5087 -3.5441 12 8 2.6663 -1.9525 -3.5232 13 8 0.7798 -1.6645 -4.6374 14 6 1.3696 -2.3767 -5.7568 15 6 0.3583 -2.4537 -6.9023 16 6 -0.0220 -1.1343 -7.5233 17 1 -0.8964 -0.6052 -7.1743 18 6 0.7465 -0.6026 -8.5371 19 7 1.8771 -1.1815 -8.8781 20 14 0.1818 0.9401 -9.4263 21 1 -1.1135 1.3927 -8.8584 22 1 1.1981 2.0095 -9.2562 23 1 0.0118 0.6442 -10.8716 24 6 -0.7230 -3.5329 -6.8187 25 6 0.4243 -3.6746 -7.8221 26 1 -0.3634 -1.0274 0.0232 27 1 -0.3633 0.5338 0.8781 28 1 -0.3633 0.4937 -0.9013 29 1 2.7300 -2.7802 1.3529 30 1 3.9328 -1.6396 0.6770 31 1 1.4177 -2.7677 -0.6700 32 1 3.0890 -2.6820 -1.3203 33 1 0.7303 0.2344 -2.6191 34 1 0.1096 -1.3049 -1.9759 35 1 2.2612 -1.8483 -6.0945 36 1 1.6416 -3.3846 -5.4435 37 1 2.4179 -0.8073 -9.5910 38 1 -0.7136 -4.1883 -5.9478 39 1 -1.7093 -3.2887 -7.2133 40 1 0.1923 -3.5235 -8.8764 41 1 1.1879 -4.4231 -7.6109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796730206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:05 Heat of formation + Delta-G solvation = -132.495883 kcal Electronic energy + Delta-G solvation = -22018.281753 eV Core-core repulsion = 18669.887818 eV Total energy + Delta-G solvation = -3348.393935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64152 -40.78046 -38.71578 -37.84731 -36.75171 -34.00649 -32.71221 -31.46578 -28.70587 -27.36631 -26.14422 -25.83157 -23.00333 -22.35661 -21.16506 -20.87736 -19.65270 -18.58028 -18.31488 -17.61796 -17.19768 -16.96484 -16.56442 -16.24743 -15.86108 -15.57143 -15.18498 -14.68271 -14.27923 -14.18349 -13.93014 -13.60865 -13.52109 -13.50027 -13.04500 -12.93756 -12.88550 -12.77682 -12.35921 -12.31182 -12.07519 -11.95361 -11.72642 -11.58859 -11.53242 -11.42756 -11.18754 -10.74783 -10.47897 -10.38274 -10.05842 -8.12796 -6.23706 0.90081 1.38196 1.41446 1.44747 1.55531 1.91802 2.43517 3.10305 3.16579 3.38510 3.50868 3.65005 3.77699 4.01105 4.17090 4.18447 4.23900 4.32935 4.41139 4.46486 4.51084 4.53935 4.59945 4.68961 4.75532 4.84078 4.90051 4.92848 4.98547 5.04346 5.07970 5.20600 5.22106 5.31128 5.38175 5.50568 5.60484 5.76338 5.84539 6.37785 6.46961 6.82198 6.95728 7.45258 8.96172 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.003754 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.266874 B = 7456.933868 C = 7901.127778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 H 0.117 0.883 4 C 0.379 3.621 5 O -0.483 6.483 6 C -0.177 4.177 7 C -0.115 4.115 8 C -0.069 4.069 9 H 0.087 0.913 10 C -0.101 4.101 11 C 0.446 3.554 12 O -0.545 6.545 13 O -0.351 6.351 14 C 0.130 3.870 15 C 0.004 3.996 16 C -0.503 4.503 17 H 0.056 0.944 18 C 0.023 3.977 19 N -0.910 5.910 20 Si 0.951 3.049 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.177 4.177 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 0.154 15.819 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 H 0.134 0.866 4 C 0.256 3.744 5 O -0.358 6.358 6 C -0.215 4.215 7 C -0.153 4.153 8 C -0.088 4.088 9 H 0.105 0.895 10 C -0.138 4.138 11 C 0.291 3.709 12 O -0.436 6.436 13 O -0.267 6.267 14 C 0.057 3.943 15 C 0.004 3.996 16 C -0.540 4.540 17 H 0.074 0.926 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.214 4.214 25 C -0.187 4.187 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.253 0.173 16.256 16.305 hybrid contribution 0.426 0.580 -1.065 1.285 sum -0.827 0.753 15.191 15.232 Atomic orbital electron populations 1.21857 0.91479 1.03246 1.03818 1.22247 0.98999 1.01569 0.93142 0.86555 1.25283 0.75799 0.84664 0.88623 1.90401 1.53591 1.68700 1.23138 1.22921 1.01840 0.98772 0.97950 1.22540 1.02187 0.96367 0.94179 1.21704 0.97940 0.96823 0.92309 0.89485 1.21698 1.00845 1.02753 0.88474 1.24654 0.83956 0.77290 0.84994 1.90585 1.21382 1.48463 1.83186 1.86522 1.46458 1.69700 1.24028 1.22420 0.95923 0.92817 0.83189 1.18899 0.95975 0.90779 0.93965 1.20680 1.10870 1.04538 1.17941 0.92554 1.25712 0.94624 0.99876 0.97508 1.70111 1.12948 1.41597 1.30135 0.85609 0.78608 0.79654 0.78439 1.18821 1.20961 1.20626 1.23020 0.94352 1.03292 1.00757 1.22469 1.00251 1.00141 0.95813 0.91546 0.92137 0.89328 0.88181 0.86612 0.90251 0.90644 0.85681 0.85155 0.94406 0.93443 0.93070 0.88994 0.89678 0.91374 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 7.95 71.98 0.57 -1.41 16 2 C -0.14 -2.15 3.36 -10.87 -0.04 -2.18 16 3 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.38 7.11 7.18 29.71 0.21 7.33 16 5 O -0.48 -12.39 17.99 -1.46 -0.03 -12.41 16 6 C -0.18 -2.77 6.72 30.86 0.21 -2.56 16 7 C -0.12 -2.09 5.65 31.92 0.18 -1.91 16 8 C -0.07 -1.25 2.42 -9.68 -0.02 -1.28 16 9 H 0.09 1.74 8.03 -2.39 -0.02 1.72 16 10 C -0.10 -2.08 4.01 29.85 0.12 -1.96 16 11 C 0.45 14.81 7.74 71.24 0.55 15.36 16 12 O -0.54 -20.64 14.29 21.98 0.31 -20.33 16 13 O -0.35 -14.25 10.16 -51.40 -0.52 -14.77 16 14 C 0.13 6.00 5.28 71.98 0.38 6.38 16 15 C 0.00 0.20 1.62 -52.92 -0.09 0.12 16 16 C -0.50 -26.84 8.78 25.60 0.22 -26.62 16 17 H 0.06 3.01 7.82 -2.92 -0.02 2.98 16 18 C 0.02 1.23 5.38 84.66 0.46 1.69 16 19 N -0.91 -51.24 12.88 21.45 0.28 -50.96 16 20 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.18 -7.22 9.96 30.62 0.30 -6.91 16 25 C -0.15 -6.74 9.37 30.62 0.29 -6.46 16 26 H 0.07 0.84 7.63 -2.39 -0.02 0.83 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.99 6.63 -2.39 -0.02 0.97 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 32 H 0.07 1.69 7.12 -2.38 -0.02 1.67 16 33 H 0.13 2.20 7.59 -2.39 -0.02 2.18 16 34 H 0.13 2.11 6.66 -2.38 -0.02 2.10 16 35 H 0.04 1.98 8.13 -2.38 -0.02 1.97 16 36 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 37 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 38 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 39 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -65.52 340.79 6.43 -59.09 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.01 Total: 15.38 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.35 Total: -20.41 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.28 Total: -50.96 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.23 Total: -47.51 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -65.52 6.43 -59.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796730206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.401 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds