Wall clock time and date at job start Tue Mar 31 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.00226 * 2 1 4 4 C 1.51450 * 109.98036 * 238.71936 * 2 1 3 5 5 O 1.20762 * 126.34744 * 60.31442 * 4 2 1 6 6 C 1.51847 * 107.31555 * 240.29024 * 4 2 1 7 7 C 1.54887 * 104.43317 * 23.79083 * 6 4 2 8 8 C 1.54273 * 109.98691 * 121.30175 * 2 1 3 9 9 H 1.09003 * 110.69057 * 214.85186 * 8 2 1 10 10 C 1.52998 * 110.57028 * 337.65703 * 8 2 1 11 11 C 1.50704 * 109.47261 * 180.78768 * 10 8 2 12 12 O 1.20823 * 119.99612 * 359.97438 * 11 10 8 13 13 O 1.34224 * 120.00004 * 179.97438 * 11 10 8 14 14 C 1.45198 * 117.00048 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47292 * 179.97438 * 14 13 11 16 16 C 1.50704 * 115.54889 * 39.89626 * 15 14 13 17 17 H 1.08005 * 119.99637 * 264.96847 * 16 15 14 18 18 C 1.37875 * 120.00043 * 84.97073 * 16 15 14 19 19 N 1.31517 * 120.00198 * 358.48757 * 18 16 15 20 20 Si 1.86799 * 119.99780 * 178.48822 * 18 16 15 21 21 H 1.48498 * 109.47309 * 60.00241 * 20 18 16 22 22 H 1.48505 * 109.46598 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47137 * 299.99668 * 20 18 16 24 24 C 1.53001 * 117.50240 * 254.18656 * 15 14 13 25 25 C 1.52999 * 117.49974 * 185.56194 * 15 14 13 26 26 H 1.08998 * 109.47247 * 298.69684 * 1 2 3 27 27 H 1.09000 * 109.47763 * 58.70046 * 1 2 3 28 28 H 1.09010 * 109.46987 * 178.70080 * 1 2 3 29 29 H 1.09004 * 110.44365 * 265.05592 * 6 4 2 30 30 H 1.09004 * 110.54863 * 142.58367 * 6 4 2 31 31 H 1.08997 * 110.83408 * 204.16473 * 7 6 4 32 32 H 1.09004 * 111.00551 * 80.65899 * 7 6 4 33 33 H 1.09002 * 109.47230 * 60.78234 * 10 8 2 34 34 H 1.09007 * 109.47120 * 300.78721 * 10 8 2 35 35 H 1.09001 * 109.46807 * 60.00271 * 14 13 11 36 36 H 1.08994 * 109.47471 * 300.00546 * 14 13 11 37 37 H 0.96996 * 120.00182 * 180.02562 * 19 18 16 38 38 H 1.09002 * 117.49622 * 0.02562 * 24 15 14 39 39 H 1.09000 * 117.50072 * 145.01841 * 24 15 14 40 40 H 1.09004 * 117.50252 * 214.97620 * 25 15 14 41 41 H 1.08998 * 117.49951 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0475 -0.7390 -1.2164 5 8 1.8393 -0.4516 -2.3707 6 6 2.8771 -1.9082 -0.7159 7 6 2.3367 -2.1829 0.7094 8 6 2.0573 -0.7532 1.2388 9 1 2.9754 -0.2948 1.6064 10 6 0.9959 -0.7857 2.3403 11 6 1.5430 -1.5092 3.5438 12 8 2.6663 -1.9537 3.5225 13 8 0.7823 -1.6598 4.6394 14 6 1.3740 -2.3676 5.7606 15 6 0.3651 -2.4390 6.9085 16 6 -1.0627 -2.7011 6.5036 17 1 -1.7448 -1.8753 6.3645 18 6 -1.4982 -3.9950 6.3107 19 7 -0.6601 -4.9987 6.4511 20 14 -3.2787 -4.3222 5.8500 21 1 -3.5907 -3.6437 4.5665 22 1 -3.4904 -5.7845 5.7006 23 1 -4.1700 -3.7989 6.9162 24 6 0.6019 -1.5284 8.1150 25 6 0.8440 -3.0344 8.2340 26 1 -0.3634 0.4934 0.9014 27 1 -0.3634 0.5339 -0.8781 28 1 -0.3633 -1.0275 -0.0233 29 1 3.9323 -1.6374 -0.6772 30 1 2.7320 -2.7808 -1.3528 31 1 3.0892 -2.6821 1.3198 32 1 1.4183 -2.7689 0.6729 33 1 0.1097 -1.3052 1.9758 34 1 0.7303 0.2341 2.6191 35 1 2.2665 -1.8382 6.0942 36 1 1.6448 -3.3770 5.4510 37 1 -0.9664 -5.9090 6.3150 38 1 1.4763 -0.8781 8.0907 39 1 -0.2751 -1.1184 8.6160 40 1 0.1263 -3.6153 8.8135 41 1 1.8778 -3.3757 8.2881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796730212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:11 Heat of formation + Delta-G solvation = -115.896681 kcal Electronic energy + Delta-G solvation = -22177.969194 eV Core-core repulsion = 18830.295055 eV Total energy + Delta-G solvation = -3347.674139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52156 -39.52225 -37.29140 -36.51626 -35.16329 -31.96107 -31.87635 -30.49479 -27.06080 -25.52885 -25.17502 -24.79479 -21.32246 -21.08705 -19.81266 -19.29048 -18.76256 -17.27904 -16.71797 -16.23726 -15.78673 -15.73134 -15.05503 -14.96416 -14.62248 -14.12037 -13.72361 -13.43482 -13.29712 -12.96816 -12.77360 -12.56938 -12.19560 -11.94959 -11.91097 -11.60444 -11.46707 -11.12460 -10.95720 -10.89760 -10.81470 -10.61282 -10.55143 -10.33651 -9.96240 -9.79794 -9.58112 -9.46316 -8.94742 -8.47078 -8.16010 -6.06345 -4.11408 1.74638 2.78781 3.28878 3.33938 3.34042 3.36758 3.91018 4.29065 4.38394 4.53597 4.63944 4.93768 5.04097 5.10252 5.14793 5.22306 5.24453 5.28897 5.43817 5.49620 5.55403 5.68599 5.71904 5.78712 5.85573 5.96579 5.97134 6.16264 6.18320 6.20139 6.30846 6.46181 6.65257 6.74578 6.99829 7.16661 7.30552 7.35672 7.49008 7.85749 8.32392 8.50482 8.88742 9.53808 11.03225 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.004338 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.204181 B = 6453.506307 C = 7123.075640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 H 0.103 0.897 4 C 0.375 3.625 5 O -0.449 6.449 6 C -0.183 4.183 7 C -0.117 4.117 8 C -0.072 4.072 9 H 0.093 0.907 10 C -0.110 4.110 11 C 0.451 3.549 12 O -0.527 6.527 13 O -0.325 6.325 14 C 0.118 3.882 15 C 0.035 3.965 16 C -0.481 4.481 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.210 4.210 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 7.729 -9.808 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 H 0.121 0.879 4 C 0.250 3.750 5 O -0.322 6.322 6 C -0.221 4.221 7 C -0.154 4.154 8 C -0.090 4.090 9 H 0.111 0.889 10 C -0.148 4.148 11 C 0.295 3.705 12 O -0.418 6.418 13 O -0.240 6.240 14 C 0.044 3.956 15 C 0.035 3.965 16 C -0.519 4.519 17 H 0.080 0.920 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.247 4.247 25 C -0.183 4.183 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.988 7.519 -10.384 13.757 hybrid contribution -0.735 -0.440 -0.039 0.858 sum 4.253 7.080 -10.423 13.298 Atomic orbital electron populations 1.21817 0.92299 1.02953 1.03157 1.22307 0.98415 1.01260 0.94831 0.87855 1.25044 0.76471 0.84554 0.88897 1.90400 1.52227 1.67737 1.21845 1.22939 1.01400 0.98907 0.98842 1.22587 1.02550 0.96481 0.93780 1.21742 0.98387 0.96566 0.92343 0.88899 1.21505 1.00146 1.02152 0.90982 1.23552 0.84165 0.77701 0.85097 1.90577 1.20546 1.47603 1.83060 1.86584 1.45304 1.68844 1.23228 1.22701 0.93978 0.94669 0.84208 1.18780 0.95108 0.98293 0.84322 1.20257 0.92835 0.92004 1.46816 0.92018 1.24976 0.97367 0.96186 0.94829 1.69982 1.34478 0.98908 1.48724 0.86667 0.85197 0.77019 0.79176 1.20128 1.21352 1.20196 1.23117 1.00985 0.93271 1.07347 1.22519 0.99368 0.93538 1.02828 0.90581 0.92012 0.91839 0.87762 0.89053 0.88794 0.90799 0.87347 0.87726 0.94296 0.91328 0.92958 0.91614 0.90090 0.89377 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.95 37.16 0.30 -1.01 16 2 C -0.15 -1.38 3.36 -90.74 -0.30 -1.69 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.38 4.08 7.18 -28.10 -0.20 3.88 16 5 O -0.45 -6.28 17.99 6.00 0.11 -6.17 16 6 C -0.18 -1.73 6.72 -26.32 -0.18 -1.91 16 7 C -0.12 -1.28 5.66 -24.69 -0.14 -1.42 16 8 C -0.07 -0.75 2.42 -88.91 -0.22 -0.97 16 9 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 10 C -0.11 -1.35 4.01 -27.88 -0.11 -1.46 16 11 C 0.45 7.93 7.74 36.01 0.28 8.21 16 12 O -0.53 -10.09 14.29 -18.75 -0.27 -10.35 16 13 O -0.33 -6.92 9.61 -39.24 -0.38 -7.29 16 14 C 0.12 2.68 5.53 37.16 0.21 2.89 16 15 C 0.04 0.86 1.81 -155.66 -0.28 0.57 16 16 C -0.48 -12.75 8.24 -34.44 -0.28 -13.04 16 17 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 18 C 0.07 1.85 5.41 -17.82 -0.10 1.75 16 19 N -0.88 -24.49 12.80 55.43 0.71 -23.78 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.21 -4.45 9.88 -26.73 -0.26 -4.71 16 25 C -0.15 -3.30 9.33 -26.73 -0.25 -3.55 16 26 H 0.08 0.61 6.63 -51.93 -0.34 0.26 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.59 7.64 -51.92 -0.40 0.19 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.18 7.12 -51.93 -0.37 0.81 16 32 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 33 H 0.11 1.26 6.66 -51.93 -0.35 0.91 16 34 H 0.10 1.07 7.59 -51.92 -0.39 0.67 16 35 H 0.04 0.82 7.94 -51.93 -0.41 0.41 16 36 H 0.07 1.70 8.13 -51.93 -0.42 1.27 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -30.20 339.75 -7.72 -37.92 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.44 Total: 1.38 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.55 Total: -12.44 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.71 Total: -23.78 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.54 Total: -23.82 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.20 -7.72 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796730212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.977 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds