Wall clock time and date at job start Tue Mar 31 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33628 * 125.80853 * 2 1 4 4 C 1.34212 * 110.92715 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.43027 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47063 * 300.02064 * 5 4 3 7 7 C 1.52999 * 109.46996 * 60.02215 * 5 4 3 8 8 C 1.34164 * 109.14282 * 359.97438 * 4 3 2 9 9 C 1.36496 * 125.80717 * 180.02562 * 2 1 3 10 10 C 1.47231 * 127.20133 * 359.97438 * 9 2 1 11 11 O 1.21532 * 120.00209 * 0.02562 * 10 9 2 12 12 O 1.34774 * 119.99836 * 180.02562 * 10 9 2 13 13 C 1.45194 * 117.00102 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47228 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46853 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46953 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99886 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47114 * 119.99919 * 20 18 16 23 23 H 1.48493 * 109.47420 * 240.00142 * 20 18 16 24 24 H 1.08999 * 109.47161 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47120 * 119.97228 * 1 2 3 26 26 H 1.08995 * 109.47555 * 239.97213 * 1 2 3 27 27 H 1.08998 * 109.46882 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.46452 * 59.99846 * 6 5 4 29 29 H 1.08988 * 109.46767 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47068 * 300.00067 * 6 5 4 31 31 H 1.08997 * 109.47349 * 60.00369 * 7 5 4 32 32 H 1.09002 * 109.46956 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47180 * 299.99664 * 7 5 4 34 34 H 1.07999 * 127.02221 * 179.73892 * 8 4 3 35 35 H 1.09000 * 109.47087 * 300.00403 * 13 12 10 36 36 H 1.09001 * 109.47052 * 59.99713 * 13 12 10 37 37 H 1.08994 * 109.47084 * 299.99858 * 14 13 12 38 38 H 1.08995 * 109.47063 * 60.00202 * 14 13 12 39 39 H 1.08994 * 109.47278 * 299.99884 * 15 14 13 40 40 H 1.08995 * 109.47002 * 60.00310 * 15 14 13 41 41 H 0.96996 * 120.00310 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 4.7456 1.7014 -0.0013 6 6 4.6766 2.5823 -1.2504 7 6 4.6783 2.5820 1.2481 8 6 3.6856 -0.5989 -0.0004 9 6 2.3055 -1.1070 -0.0005 10 6 1.8753 -2.5150 -0.0006 11 8 0.6912 -2.7886 -0.0007 12 8 2.7946 -3.5005 -0.0006 13 6 2.2983 -4.8650 -0.0013 14 6 3.4795 -5.8374 -0.0005 15 6 2.9564 -7.2752 -0.0006 16 6 4.1199 -8.2330 0.0008 17 1 5.1313 -7.8541 0.0012 18 6 3.8932 -9.5930 0.0004 19 7 2.6617 -10.0545 -0.0006 20 14 5.3354 -10.7803 0.0014 21 1 6.6074 -10.0139 0.0032 22 1 5.2717 -11.6355 1.2138 23 1 5.2737 -11.6352 -1.2112 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5134 -0.8902 26 1 -0.3634 -0.5142 0.8897 27 1 5.6814 1.1426 -0.0021 28 1 3.7406 3.1410 -1.2496 29 1 5.5150 3.2786 -1.2507 30 1 4.7245 1.9550 -2.1405 31 1 4.7276 1.9544 2.1380 32 1 5.5169 3.2784 1.2474 33 1 3.7425 3.1408 1.2488 34 1 4.5938 -1.1833 -0.0046 35 1 1.6908 -5.0311 0.8884 36 1 1.6915 -5.0304 -0.8915 37 1 4.0873 -5.6714 -0.8899 38 1 4.0858 -5.6718 0.8900 39 1 2.3489 -7.4409 0.8890 40 1 2.3499 -7.4411 -0.8909 41 1 2.5023 -11.0112 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797025143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:06 Heat of formation + Delta-G solvation = -107.657543 kcal Electronic energy + Delta-G solvation = -21047.475630 eV Core-core repulsion = 17700.158766 eV Total energy + Delta-G solvation = -3347.316864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86631 -39.85340 -36.43645 -35.96240 -33.97091 -33.25426 -31.72126 -31.49460 -27.61067 -27.56035 -26.71446 -24.19252 -22.82811 -22.10594 -21.37057 -20.35830 -19.12445 -17.40787 -16.71984 -16.66605 -16.19485 -15.99030 -15.54452 -15.18646 -14.48794 -14.45264 -13.97175 -13.62338 -13.39604 -13.34976 -13.05854 -12.96026 -12.56727 -12.33270 -12.17542 -12.09414 -11.85737 -11.62018 -11.56920 -11.30914 -10.97571 -10.63870 -10.61098 -10.37469 -10.34574 -9.96210 -9.68844 -9.50413 -9.13769 -8.64533 -8.38217 -6.02729 -4.05587 1.09117 1.81108 2.41217 2.99977 3.13144 3.30668 3.38033 3.42527 4.06954 4.42323 4.44377 4.61008 4.69400 4.83717 4.88056 5.03600 5.23072 5.24240 5.31248 5.33338 5.42057 5.43442 5.47890 5.57681 5.61625 5.65501 5.67703 5.80439 5.82647 5.93729 6.04732 6.14548 6.52845 6.56776 6.85060 6.86910 7.00733 7.61914 7.73004 7.95771 8.00979 8.37277 9.00942 9.58683 11.08827 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.002802 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.869754 B = 9990.610133 C =10882.512746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.083 3.917 3 O -0.167 6.167 4 C -0.014 4.014 5 C -0.012 4.012 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.226 4.226 10 C 0.534 3.466 11 O -0.515 6.515 12 O -0.350 6.350 13 C 0.069 3.931 14 C -0.108 4.108 15 C 0.024 3.976 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 27.268 -0.008 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 O -0.064 6.064 4 C -0.062 4.062 5 C -0.031 4.031 6 C -0.207 4.207 7 C -0.207 4.207 8 C -0.179 4.179 9 C -0.228 4.228 10 C 0.380 3.620 11 O -0.406 6.406 12 O -0.267 6.267 13 C -0.004 4.004 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.181 0.819 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.468 27.270 -0.008 27.274 hybrid contribution 0.691 -1.152 0.000 1.343 sum 1.159 26.118 -0.008 26.144 Atomic orbital electron populations 1.20525 0.83450 1.03755 1.05448 1.22770 0.93968 0.82903 0.97352 1.83677 1.16726 1.34495 1.71489 1.22212 0.82364 0.94503 1.07078 1.19808 0.92128 0.94195 0.96928 1.21881 1.02586 0.99535 0.96692 1.21882 1.02587 0.99537 0.96690 1.22701 0.96966 0.93034 1.05176 1.20282 0.93989 0.90996 1.17565 1.19895 0.83929 0.85353 0.72816 1.90822 1.18106 1.84731 1.46926 1.86563 1.39388 1.17418 1.83307 1.23512 0.99094 0.75574 1.02173 1.21760 0.95512 0.95390 1.01952 1.19058 0.96899 0.87693 0.97696 1.21216 0.92892 0.90943 1.50790 0.92380 1.25033 0.95738 0.98516 0.95231 1.69973 1.19193 1.13536 1.50693 0.86492 0.82683 0.80985 0.77594 1.19662 1.20978 1.20974 0.90332 0.88404 0.88404 0.87874 0.92112 0.91585 0.92034 0.92033 0.91587 0.92112 0.81943 0.91479 0.91474 0.92158 0.92158 0.96209 0.96211 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.14 36.00 0.33 -0.38 16 2 C 0.08 1.00 7.38 -34.94 -0.26 0.74 16 3 O -0.17 -1.88 10.52 7.72 0.08 -1.80 16 4 C -0.01 -0.14 5.79 -35.74 -0.21 -0.35 16 5 C -0.01 -0.09 3.32 -91.77 -0.30 -0.39 16 6 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 7 C -0.15 -0.95 9.18 37.16 0.34 -0.60 16 8 C -0.16 -1.96 10.90 -37.44 -0.41 -2.36 16 9 C -0.23 -3.23 6.32 -103.30 -0.65 -3.88 16 10 C 0.53 9.13 7.95 34.38 0.27 9.40 16 11 O -0.51 -9.49 15.46 -19.29 -0.30 -9.79 16 12 O -0.35 -6.37 10.13 -40.69 -0.41 -6.78 16 13 C 0.07 1.34 5.48 37.16 0.20 1.54 16 14 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 26 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.10 0.63 8.09 -51.93 -0.42 0.20 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.31 8.14 -51.94 -0.42 -0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -32.28 354.15 -7.34 -39.61 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -6.72 Total: -4.48 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.04 Total: -12.47 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.63 Total: -18.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.28 -7.34 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797025143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.044 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds