Wall clock time and date at job start Tue Mar 31 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47110 * 300.00508 * 3 2 1 6 6 H 1.48508 * 109.46523 * 60.00323 * 3 2 1 7 7 C 1.37878 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00071 * 172.18961 * 7 2 1 9 9 C 1.50700 * 120.00128 * 352.18752 * 7 2 1 10 10 C 1.53002 * 115.54727 * 294.78134 * 9 7 2 11 11 N 1.46500 * 109.47368 * 275.59969 * 10 9 7 12 12 C 1.34772 * 120.00055 * 185.00910 * 11 10 9 13 13 O 1.21583 * 120.00111 * 4.91404 * 12 11 10 14 14 N 1.34778 * 119.99840 * 184.91695 * 12 11 10 15 15 C 1.48143 * 127.83771 * 355.01287 * 14 12 11 16 16 C 1.54394 * 104.61838 * 140.42007 * 15 14 12 17 17 H 1.09002 * 118.17963 * 244.20465 * 16 15 14 18 18 C 1.52994 * 118.12490 * 87.18598 * 16 15 14 19 19 C 1.52994 * 60.55719 * 268.46063 * 18 16 15 20 20 C 1.53003 * 119.54135 * 248.23133 * 19 18 16 21 21 O 1.42901 * 109.47172 * 250.23553 * 20 19 18 22 22 C 1.51834 * 127.60882 * 175.35276 * 14 12 11 23 23 C 1.52998 * 117.51794 * 80.48385 * 9 7 2 24 24 C 1.52998 * 60.00096 * 107.48468 * 23 9 7 25 25 H 0.96993 * 119.99979 * 4.99784 * 1 2 3 26 26 H 1.09007 * 109.46593 * 155.60560 * 10 9 7 27 27 H 1.08995 * 109.47323 * 35.60509 * 10 9 7 28 28 H 0.97002 * 119.99796 * 5.00678 * 11 10 9 29 29 H 1.08998 * 110.40799 * 21.62997 * 15 14 12 30 30 H 1.09004 * 110.50613 * 259.24740 * 15 14 12 31 31 H 1.09002 * 117.43924 * 160.81219 * 18 16 15 32 32 H 1.09004 * 117.40578 * 16.12911 * 18 16 15 33 33 H 1.08996 * 109.46990 * 10.23368 * 20 19 18 34 34 H 1.09000 * 109.47286 * 130.23280 * 20 19 18 35 35 H 0.96698 * 113.99736 * 180.02562 * 21 20 19 36 36 H 1.09002 * 110.21956 * 101.72674 * 22 14 12 37 37 H 1.08994 * 112.25993 * 338.13621 * 22 14 12 38 38 H 1.09007 * 117.49744 * 214.97001 * 23 9 7 39 39 H 1.09001 * 117.50264 * 359.97438 * 23 9 7 40 40 H 1.09005 * 117.49686 * 252.51087 * 24 23 9 41 41 H 1.08995 * 117.50641 * 107.48998 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0771 -1.1984 -0.1276 9 6 1.2615 -2.4932 0.1763 10 6 0.5849 -2.6868 1.5349 11 7 1.5578 -3.2159 2.4940 12 6 1.1612 -3.5618 3.7347 13 8 -0.0174 -3.5195 4.0301 14 7 2.0712 -3.9546 4.6480 15 6 3.5241 -4.1664 4.4504 16 6 4.1772 -3.6096 5.7338 17 1 4.8358 -2.7458 5.6431 18 6 4.3239 -4.5474 6.9337 19 6 3.0704 -3.6794 6.8064 20 6 2.8377 -2.5400 7.8007 21 8 1.7479 -2.8748 8.6623 22 6 1.8328 -4.2858 6.1105 23 6 0.5621 -3.0803 -1.0513 24 6 1.8351 -3.7343 -0.5104 25 1 -0.4850 0.8368 -0.0732 26 1 -0.2425 -3.3889 1.4319 27 1 0.2065 -1.7290 1.8921 28 1 2.4873 -3.3173 2.2360 29 1 3.8730 -3.6161 3.5767 30 1 3.7438 -5.2286 4.3423 31 1 5.0491 -4.2731 7.6998 32 1 4.2153 -5.6165 6.7511 33 1 3.7379 -2.3878 8.3960 34 1 2.6029 -1.6252 7.2566 35 1 1.5434 -2.1958 9.3197 36 1 1.8081 -5.3662 6.2528 37 1 0.9199 -3.8301 6.4935 38 1 -0.3802 -3.6044 -0.8911 39 1 0.6388 -2.5267 -1.9871 40 1 2.7497 -3.6111 -1.0905 41 1 1.7305 -4.6886 0.0056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797561947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:29 Heat of formation + Delta-G solvation = -10.079751 kcal Electronic energy + Delta-G solvation = -22315.170284 eV Core-core repulsion = 19004.377462 eV Total energy + Delta-G solvation = -3310.792822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32206 -38.54609 -36.71534 -36.40911 -33.51769 -32.81867 -32.03474 -28.97787 -27.00314 -26.11525 -25.63351 -24.32651 -21.40867 -21.18909 -19.41490 -19.32997 -19.24398 -17.75310 -17.25115 -16.08651 -15.77984 -15.50642 -15.13775 -14.81927 -14.61629 -14.05679 -13.66393 -13.53315 -13.33150 -13.01192 -12.61815 -12.41394 -12.07622 -11.77436 -11.65619 -11.50078 -11.32068 -10.99774 -10.91442 -10.54989 -10.51500 -10.38300 -10.28354 -9.82563 -9.62496 -9.39523 -9.03076 -8.59165 -8.56767 -8.20590 -7.92681 -6.07664 -4.14220 2.94494 3.22409 3.24854 3.33861 3.35743 3.74439 3.96617 4.35178 4.39347 4.47549 4.64860 4.72380 4.91477 4.94950 5.14512 5.16770 5.38545 5.39937 5.47376 5.51768 5.62180 5.80117 5.82895 5.95958 6.00693 6.05011 6.24775 6.33966 6.49671 6.64171 6.70693 6.92032 7.06668 7.34216 7.44033 7.44691 7.53838 7.63509 7.85012 8.35729 8.63504 8.85632 9.22735 9.50493 11.00250 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.004680 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.338445 B = 5981.617670 C = 6501.590589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.181 3.819 11 N -0.725 5.725 12 C 0.721 3.279 13 O -0.597 6.597 14 N -0.653 5.653 15 C 0.132 3.868 16 C -0.160 4.160 17 H 0.123 0.877 18 C -0.133 4.133 19 C -0.152 4.152 20 C 0.124 3.876 21 O -0.567 6.567 22 C 0.170 3.830 23 C -0.164 4.164 24 C -0.208 4.208 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.392 0.608 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.380 0.620 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -6.907 13.480 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.033 3.967 10 C 0.058 3.942 11 N -0.378 5.378 12 C 0.424 3.576 13 O -0.476 6.476 14 N -0.394 5.394 15 C 0.008 3.992 16 C -0.179 4.179 17 H 0.141 0.859 18 C -0.170 4.170 19 C -0.153 4.153 20 C 0.046 3.954 21 O -0.373 6.373 22 C 0.048 3.952 23 C -0.202 4.202 24 C -0.245 4.245 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.226 0.774 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.486 -7.201 13.239 17.296 hybrid contribution 0.992 1.518 0.091 1.816 sum 9.478 -5.682 13.331 17.316 Atomic orbital electron populations 1.69974 1.05897 1.26896 1.48194 1.24988 0.94792 0.98972 0.94426 0.86575 0.80144 0.83858 0.77658 1.19745 1.20989 1.20948 1.20453 0.93169 0.88745 1.51214 0.92117 1.19091 0.97720 0.91431 0.88443 1.20901 0.88431 0.97645 0.87216 1.45330 1.13267 1.68035 1.11151 1.15511 0.83838 0.77914 0.80368 1.90883 1.15221 1.61811 1.79638 1.49280 1.06984 1.72974 1.10130 1.21677 0.80896 1.00186 0.96398 1.23824 1.01027 1.02983 0.90071 0.85935 1.23187 0.97628 0.97623 0.98610 1.22657 0.91265 1.01463 0.99922 1.21364 0.88917 0.94858 0.90225 1.86475 1.52914 1.48133 1.49738 1.21989 0.96740 0.98701 0.77741 1.22705 0.93379 1.03594 1.00543 1.22872 0.97783 0.96984 1.06877 0.92803 0.94262 0.90485 0.77413 0.89769 0.91106 0.87912 0.88419 0.93388 0.92986 0.77289 0.91212 0.88599 0.91608 0.89978 0.90437 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.62 12.60 55.43 0.70 -23.92 16 2 C 0.07 1.94 5.22 -17.82 -0.09 1.85 16 3 Si 0.89 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.50 -13.04 8.82 -34.44 -0.30 -13.35 16 8 H 0.06 1.57 7.83 -52.48 -0.41 1.16 16 9 C 0.03 0.82 1.32 -155.66 -0.21 0.61 16 10 C 0.18 4.37 5.53 -4.04 -0.02 4.34 16 11 N -0.72 -14.99 5.44 -65.22 -0.35 -15.34 16 12 C 0.72 15.09 8.57 -86.92 -0.74 14.35 16 13 O -0.60 -14.91 16.73 5.29 0.09 -14.82 16 14 N -0.65 -10.60 3.39 -171.83 -0.58 -11.18 16 15 C 0.13 1.59 6.77 -2.41 -0.02 1.57 16 16 C -0.16 -1.61 7.04 -89.22 -0.63 -2.24 16 17 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.13 -1.12 9.81 -26.74 -0.26 -1.39 16 19 C -0.15 -1.70 2.69 -153.11 -0.41 -2.12 16 20 C 0.12 1.27 7.34 37.16 0.27 1.54 16 21 O -0.57 -6.03 12.94 -35.23 -0.46 -6.48 16 22 C 0.17 2.43 6.69 -0.29 0.00 2.43 16 23 C -0.16 -3.76 9.88 -26.73 -0.26 -4.02 16 24 C -0.21 -4.31 9.78 -26.73 -0.26 -4.58 16 25 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 26 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 27 H 0.08 2.13 7.26 -51.93 -0.38 1.76 16 28 H 0.39 7.25 6.79 -40.82 -0.28 6.97 16 29 H 0.08 1.00 6.80 -51.93 -0.35 0.65 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.38 8.04 -51.93 -0.42 -0.04 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.38 2.27 9.12 45.56 0.42 2.68 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.59 7.47 -51.93 -0.39 1.20 16 38 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 39 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -32.65 342.24 -8.99 -41.64 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.57 Total: 10.22 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.94 Total: -0.98 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.24 Total: -50.45 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.37 Total: -21.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.65 -8.99 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.557 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds