Wall clock time and date at job start Tue Mar 31 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47110 * 300.00508 * 3 2 1 6 6 H 1.48508 * 109.46523 * 60.00323 * 3 2 1 7 7 C 1.37878 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00071 * 172.18961 * 7 2 1 9 9 C 1.50700 * 120.00128 * 352.18752 * 7 2 1 10 10 C 1.53002 * 115.54727 * 294.78134 * 9 7 2 11 11 N 1.46500 * 109.47368 * 275.59969 * 10 9 7 12 12 C 1.34772 * 120.00055 * 185.00910 * 11 10 9 13 13 O 1.21583 * 120.00111 * 4.91404 * 12 11 10 14 14 N 1.34778 * 119.99840 * 184.91695 * 12 11 10 15 15 C 1.48143 * 127.83771 * 355.01287 * 14 12 11 16 16 C 1.54394 * 104.61838 * 140.42007 * 15 14 12 17 17 H 1.09002 * 118.17963 * 244.20465 * 16 15 14 18 18 C 1.52994 * 118.12490 * 87.18598 * 16 15 14 19 19 C 1.52994 * 60.55719 * 268.46063 * 18 16 15 20 20 C 1.53003 * 119.54135 * 248.23133 * 19 18 16 21 21 O 1.42901 * 109.47172 * 250.23553 * 20 19 18 22 22 C 1.51834 * 127.60882 * 175.35276 * 14 12 11 23 23 C 1.52998 * 117.51794 * 80.48385 * 9 7 2 24 24 C 1.52998 * 60.00096 * 107.48468 * 23 9 7 25 25 H 0.96993 * 119.99979 * 4.99784 * 1 2 3 26 26 H 1.09007 * 109.46593 * 155.60560 * 10 9 7 27 27 H 1.08995 * 109.47323 * 35.60509 * 10 9 7 28 28 H 0.97002 * 119.99796 * 5.00678 * 11 10 9 29 29 H 1.08998 * 110.40799 * 21.62997 * 15 14 12 30 30 H 1.09004 * 110.50613 * 259.24740 * 15 14 12 31 31 H 1.09002 * 117.43924 * 160.81219 * 18 16 15 32 32 H 1.09004 * 117.40578 * 16.12911 * 18 16 15 33 33 H 1.08996 * 109.46990 * 10.23368 * 20 19 18 34 34 H 1.09000 * 109.47286 * 130.23280 * 20 19 18 35 35 H 0.96698 * 113.99736 * 180.02562 * 21 20 19 36 36 H 1.09002 * 110.21956 * 101.72674 * 22 14 12 37 37 H 1.08994 * 112.25993 * 338.13621 * 22 14 12 38 38 H 1.09007 * 117.49744 * 214.97001 * 23 9 7 39 39 H 1.09001 * 117.50264 * 359.97438 * 23 9 7 40 40 H 1.09005 * 117.49686 * 252.51087 * 24 23 9 41 41 H 1.08995 * 117.50641 * 107.48998 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0771 -1.1984 -0.1276 9 6 1.2615 -2.4932 0.1763 10 6 0.5849 -2.6868 1.5349 11 7 1.5578 -3.2159 2.4940 12 6 1.1612 -3.5618 3.7347 13 8 -0.0174 -3.5195 4.0301 14 7 2.0712 -3.9546 4.6480 15 6 3.5241 -4.1664 4.4504 16 6 4.1772 -3.6096 5.7338 17 1 4.8358 -2.7458 5.6431 18 6 4.3239 -4.5474 6.9337 19 6 3.0704 -3.6794 6.8064 20 6 2.8377 -2.5400 7.8007 21 8 1.7479 -2.8748 8.6623 22 6 1.8328 -4.2858 6.1105 23 6 0.5621 -3.0803 -1.0513 24 6 1.8351 -3.7343 -0.5104 25 1 -0.4850 0.8368 -0.0732 26 1 -0.2425 -3.3889 1.4319 27 1 0.2065 -1.7290 1.8921 28 1 2.4873 -3.3173 2.2360 29 1 3.8730 -3.6161 3.5767 30 1 3.7438 -5.2286 4.3423 31 1 5.0491 -4.2731 7.6998 32 1 4.2153 -5.6165 6.7511 33 1 3.7379 -2.3878 8.3960 34 1 2.6029 -1.6252 7.2566 35 1 1.5434 -2.1958 9.3197 36 1 1.8081 -5.3662 6.2528 37 1 0.9199 -3.8301 6.4935 38 1 -0.3802 -3.6044 -0.8911 39 1 0.6388 -2.5267 -1.9871 40 1 2.7497 -3.6111 -1.0905 41 1 1.7305 -4.6886 0.0056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797561947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:28 Heat of formation + Delta-G solvation = -33.663447 kcal Electronic energy + Delta-G solvation = -22316.192949 eV Core-core repulsion = 19004.377462 eV Total energy + Delta-G solvation = -3311.815488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48113 -39.98048 -38.45950 -37.30737 -35.09350 -34.24955 -34.01360 -29.93805 -28.58501 -27.50886 -26.94659 -25.91199 -23.03103 -22.20147 -21.21356 -20.90249 -20.19430 -19.16416 -18.18046 -17.86908 -17.09909 -16.81948 -16.57225 -16.33798 -15.87712 -15.64565 -15.13571 -14.86673 -14.67514 -14.37548 -13.93684 -13.62818 -13.49631 -13.27872 -13.13879 -12.93596 -12.84452 -12.58685 -12.33266 -12.21429 -12.06360 -11.57940 -11.34612 -11.32068 -10.98685 -10.97065 -10.53110 -10.52182 -10.16124 -10.07329 -9.49534 -8.11770 -6.23248 1.39618 1.43090 1.52714 1.54362 2.16061 2.41003 2.44310 3.04417 3.16401 3.21041 3.52585 3.55823 3.76719 3.85243 4.10463 4.14673 4.21680 4.37254 4.51230 4.53672 4.61581 4.63970 4.72555 4.76609 4.83175 4.87860 4.91309 4.95573 5.01064 5.07747 5.14659 5.23014 5.24877 5.55216 5.56866 5.68776 5.80623 6.11731 6.35540 6.82190 6.88739 7.08943 7.44489 7.60221 8.96328 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.004680 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.338445 B = 5981.617670 C = 6501.590589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.008 3.992 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.715 3.285 13 O -0.648 6.648 14 N -0.651 5.651 15 C 0.124 3.876 16 C -0.156 4.156 17 H 0.137 0.863 18 C -0.100 4.100 19 C -0.174 4.174 20 C 0.124 3.876 21 O -0.588 6.588 22 C 0.165 3.835 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.260 0.740 26 H 0.025 0.975 27 H 0.032 0.968 28 H 0.404 0.596 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -7.864 14.439 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.007 3.993 10 C 0.076 3.924 11 N -0.371 5.371 12 C 0.417 3.583 13 O -0.531 6.531 14 N -0.391 5.391 15 C 0.002 3.998 16 C -0.175 4.175 17 H 0.154 0.846 18 C -0.137 4.137 19 C -0.175 4.175 20 C 0.047 3.953 21 O -0.397 6.397 22 C 0.044 3.956 23 C -0.212 4.212 24 C -0.207 4.207 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.241 0.759 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.970 -8.176 14.227 20.311 hybrid contribution -0.069 1.760 -0.147 1.767 sum 11.902 -6.417 14.079 19.521 Atomic orbital electron populations 1.70104 1.07412 1.27391 1.49752 1.25734 0.95438 1.02237 0.94408 0.85617 0.79587 0.79954 0.77175 1.18283 1.20770 1.21599 1.20758 0.93422 0.89707 1.50167 0.91748 1.19067 0.99248 0.92544 0.88440 1.20394 0.88859 0.95078 0.88073 1.45041 1.13215 1.67929 1.10873 1.15700 0.83883 0.77913 0.80816 1.90835 1.17815 1.63926 1.80560 1.49352 1.08343 1.71226 1.10131 1.22003 0.78109 1.01901 0.97792 1.23866 1.00455 1.04216 0.89011 0.84571 1.23330 0.95204 0.97690 0.97456 1.22669 0.90620 1.03250 1.01009 1.21405 0.89950 0.93656 0.90306 1.86432 1.53444 1.49377 1.50402 1.22094 0.97304 0.99474 0.76770 1.22669 0.94870 1.04188 0.99500 1.22876 0.96925 0.96177 1.04675 0.93129 0.95691 0.94938 0.75945 0.89686 0.88733 0.85176 0.87337 0.90252 0.94938 0.75265 0.89819 0.91959 0.91359 0.91179 0.89015 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.74 12.60 21.45 0.27 -52.47 16 2 C 0.02 1.21 5.22 84.65 0.44 1.65 16 3 Si 0.95 42.76 29.55 68.60 2.03 44.79 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.50 -26.22 8.82 25.60 0.23 -26.00 16 8 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 9 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 10 C 0.20 9.98 5.53 86.38 0.48 10.46 16 11 N -0.72 -29.91 5.44 -478.54 -2.60 -32.51 16 12 C 0.71 30.62 8.57 179.06 1.53 32.15 16 13 O -0.65 -34.04 16.73 -3.98 -0.07 -34.11 16 14 N -0.65 -20.87 3.39 -815.83 -2.76 -23.64 16 15 C 0.12 2.67 6.77 86.54 0.59 3.26 16 16 C -0.16 -2.63 7.04 -9.89 -0.07 -2.70 16 17 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.10 -1.23 9.81 30.59 0.30 -0.93 16 19 C -0.17 -3.52 2.69 -51.27 -0.14 -3.66 16 20 C 0.12 2.34 7.34 71.98 0.53 2.87 16 21 O -0.59 -12.04 12.94 -148.98 -1.93 -13.96 16 22 C 0.16 4.65 6.69 85.80 0.57 5.22 16 23 C -0.17 -7.95 9.88 30.59 0.30 -7.65 16 24 C -0.17 -6.70 9.78 30.59 0.30 -6.40 16 25 H 0.26 14.47 8.32 -92.71 -0.77 13.70 16 26 H 0.02 1.28 7.87 -2.38 -0.02 1.27 16 27 H 0.03 1.89 7.26 -2.39 -0.02 1.88 16 28 H 0.40 14.58 6.79 -92.71 -0.63 13.95 16 29 H 0.08 1.82 6.80 -2.39 -0.02 1.81 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 0.99 8.04 -2.39 -0.02 0.97 16 34 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.16 7.47 -2.39 -0.02 2.14 16 38 H 0.07 3.04 8.06 -2.38 -0.02 3.02 16 39 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 41 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -73.58 342.24 -0.33 -73.91 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.26 Total: 29.41 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.99 Total: 8.59 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -5.10 Total: -108.62 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.99 Total: -48.07 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.58 -0.33 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.249 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds