Wall clock time and date at job start Tue Mar 31 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00297 * 2 1 4 4 H 1.48494 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47134 * 300.00286 * 3 2 1 6 6 H 1.48496 * 109.47151 * 60.00352 * 3 2 1 7 7 C 1.37877 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00260 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99966 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46735 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47291 * 65.00256 * 12 11 10 14 14 C 1.34797 * 116.99875 * 179.97438 * 13 12 11 15 15 O 1.21529 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.46947 * 119.99887 * 180.02562 * 14 13 12 17 17 C 1.33087 * 120.00033 * 173.90361 * 16 14 13 18 18 C 1.50697 * 120.00092 * 352.36286 * 17 16 14 19 19 C 1.52995 * 117.49755 * 300.64154 * 18 17 16 20 20 C 1.52992 * 117.50246 * 232.01677 * 18 17 16 21 21 C 1.50707 * 119.99838 * 172.36688 * 17 16 14 22 22 C 1.52995 * 117.49665 * 182.32602 * 21 17 16 23 23 C 1.52999 * 60.00212 * 252.51013 * 22 21 17 24 24 H 0.96999 * 119.99546 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47188 * 60.00492 * 9 7 2 26 26 H 1.08997 * 109.47342 * 299.99958 * 9 7 2 27 27 H 1.08998 * 109.46818 * 60.00384 * 11 10 9 28 28 H 1.08998 * 109.47072 * 300.00107 * 11 10 9 29 29 H 1.08998 * 109.47262 * 305.00190 * 12 11 10 30 30 H 1.09001 * 109.46730 * 185.00048 * 12 11 10 31 31 H 1.08006 * 119.99943 * 353.90163 * 16 14 13 32 32 H 1.09004 * 115.55856 * 86.32324 * 18 17 16 33 33 H 1.09001 * 117.50202 * 145.01936 * 19 18 17 34 34 H 1.08997 * 117.50298 * 359.97438 * 19 18 17 35 35 H 1.09002 * 117.49622 * 359.97438 * 20 18 17 36 36 H 1.08993 * 117.52137 * 214.97311 * 20 18 17 37 37 H 1.08997 * 115.54859 * 328.03485 * 21 17 16 38 38 H 1.09001 * 117.49936 * 0.02562 * 22 21 17 39 39 H 1.08996 * 117.49879 * 145.01958 * 22 21 17 40 40 H 1.08994 * 117.49860 * 252.51489 * 23 22 21 41 41 H 1.09003 * 117.49968 * 107.48491 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8907 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 0.0000 12 6 2.6478 -5.9563 0.0006 13 8 3.3990 -5.8881 1.2414 14 6 4.3972 -6.7796 1.4021 15 8 4.6329 -7.5918 0.5293 16 6 5.1997 -6.7700 2.6331 17 6 6.1033 -7.7236 2.8458 18 6 6.1860 -8.9048 1.9136 19 6 4.9379 -9.7773 1.7666 20 6 6.1510 -10.3012 2.5378 21 6 7.0439 -7.6222 4.0189 22 6 8.0955 -8.7220 4.1783 23 6 6.9002 -8.6626 5.1316 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.9445 -4.9827 -0.8897 28 1 0.9450 -4.9822 0.8902 29 1 3.3214 -5.7961 -0.8412 30 1 2.1817 -6.9376 -0.0885 31 1 5.0561 -5.9890 3.3652 32 1 6.8086 -8.7639 1.0300 33 1 4.7393 -10.2106 0.7863 34 1 4.0571 -9.4973 2.3443 35 1 6.0686 -10.3655 3.6228 36 1 6.7503 -11.0792 2.0651 37 1 7.3255 -6.6101 4.3095 38 1 8.1073 -9.5186 3.4344 39 1 9.0694 -8.4336 4.5737 40 1 7.0878 -8.3350 6.1540 41 1 6.1254 -9.4203 5.0150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815195451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:03 Heat of formation + Delta-G solvation = -64.003547 kcal Electronic energy + Delta-G solvation = -21220.340569 eV Core-core repulsion = 17874.916685 eV Total energy + Delta-G solvation = -3345.423884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43633 -39.07274 -36.99431 -36.17912 -35.57861 -32.77737 -32.57493 -30.04180 -26.97427 -25.47349 -23.13691 -22.58828 -22.47583 -22.41293 -22.09654 -20.87810 -18.70763 -17.56612 -16.64945 -16.33916 -16.24532 -15.66026 -15.48093 -15.18685 -14.64815 -14.50345 -14.32014 -13.93804 -13.30491 -13.02006 -12.87440 -12.49652 -12.04828 -11.91531 -11.66105 -11.50218 -11.39715 -11.35420 -10.95356 -10.85833 -10.82636 -10.73292 -10.60963 -10.43716 -10.22411 -10.04215 -9.67083 -9.21495 -9.09761 -8.86065 -8.19592 -6.10983 -4.12375 0.99808 2.91633 3.01857 3.29841 3.36154 3.43169 3.55802 3.62531 4.26549 4.34069 4.35004 4.52502 4.63019 4.76251 4.78030 4.81315 5.02359 5.12685 5.21833 5.25686 5.28110 5.29965 5.46692 5.51813 5.54246 5.72209 5.76122 5.77691 5.89968 5.92504 5.97295 6.01423 6.09146 6.17007 6.23833 6.71123 7.07367 7.41543 7.79857 8.02083 8.14200 8.54704 9.00902 9.52407 11.00715 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002961 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.045539 B = 9455.005373 C =10261.446218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.340 6.340 14 C 0.490 3.510 15 O -0.506 6.506 16 C -0.184 4.184 17 C 0.026 3.974 18 C -0.111 4.111 19 C -0.141 4.141 20 C -0.194 4.194 21 C -0.130 4.130 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.263 0.737 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.292 -20.713 8.184 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.256 6.256 14 C 0.336 3.664 15 O -0.397 6.397 16 C -0.203 4.203 17 C 0.025 3.975 18 C -0.129 4.129 19 C -0.178 4.178 20 C -0.231 4.231 21 C -0.148 4.148 22 C -0.207 4.207 23 C -0.206 4.206 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.363 -20.772 7.899 25.430 hybrid contribution -0.119 1.014 -0.171 1.035 sum 12.244 -19.758 7.728 24.495 Atomic orbital electron populations 1.69976 1.06104 1.27064 1.50708 1.24957 0.94994 0.99467 0.95145 0.86271 0.80051 0.82517 0.77614 1.19449 1.20844 1.20810 1.21098 0.94157 0.89302 1.50617 0.91445 1.20239 0.88768 0.83553 0.95484 1.87924 1.35287 1.12622 1.95214 1.22323 0.93339 0.85505 1.00452 1.23149 0.93593 0.98547 0.84417 1.86693 1.43473 1.54113 1.41286 1.21349 0.79026 0.78270 0.87745 1.90823 1.67946 1.37433 1.43538 1.21728 0.98562 1.03015 0.96998 1.21117 0.91174 0.92675 0.92502 1.20912 1.03733 0.88751 0.99474 1.22793 0.91753 1.01820 1.01417 1.23394 1.02947 0.96547 1.00205 1.21191 1.00560 0.96898 0.96128 1.23149 0.93843 1.00916 1.02776 1.23122 1.01198 1.01104 0.95128 0.92702 0.97620 0.97507 0.92044 0.93272 0.90632 0.90604 0.84017 0.86075 0.88449 0.89572 0.88420 0.88679 0.86049 0.87440 0.88341 0.88127 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.39 5.69 36.00 0.20 5.60 16 10 O -0.39 -9.73 10.30 -38.79 -0.40 -10.13 16 11 C 0.06 1.16 6.33 37.16 0.24 1.40 16 12 C 0.08 1.27 5.86 37.16 0.22 1.49 16 13 O -0.34 -6.00 10.20 -43.54 -0.44 -6.44 16 14 C 0.49 7.62 7.56 34.26 0.26 7.88 16 15 O -0.51 -8.16 12.44 -19.29 -0.24 -8.40 16 16 C -0.18 -2.32 9.74 -37.85 -0.37 -2.69 16 17 C 0.03 0.28 5.36 -101.14 -0.54 -0.27 16 18 C -0.11 -1.16 3.46 -91.78 -0.32 -1.47 16 19 C -0.14 -1.48 7.78 -26.74 -0.21 -1.68 16 20 C -0.19 -1.58 7.89 -26.74 -0.21 -1.79 16 21 C -0.13 -1.06 6.01 -91.77 -0.55 -1.62 16 22 C -0.17 -1.13 9.55 -26.73 -0.26 -1.39 16 23 C -0.17 -1.12 9.67 -26.73 -0.26 -1.38 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.12 1.36 8.12 -51.93 -0.42 0.94 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.71 5.07 -51.93 -0.26 0.45 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 0.72 5.62 -51.93 -0.29 0.43 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.66 5.96 -51.93 -0.31 0.35 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -32.87 343.51 -8.74 -41.61 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.33 Total: -2.38 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.22 Total: -10.10 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.08 Total: -24.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.87 -8.74 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds