Wall clock time and date at job start Tue Mar 31 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47290 * 89.99939 * 3 2 1 5 5 H 1.48502 * 109.47085 * 209.99666 * 3 2 1 6 6 H 1.48501 * 109.47191 * 329.99593 * 3 2 1 7 7 C 1.38944 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00368 * 198.95550 * 7 2 1 9 9 N 1.37102 * 119.99832 * 18.95826 * 7 2 1 10 10 C 1.34774 * 119.99731 * 43.07983 * 9 7 2 11 11 O 1.21294 * 120.00545 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99838 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47382 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.21186 * 305.70255 * 13 12 10 15 15 C 1.54479 * 110.24727 * 183.77119 * 13 12 10 16 16 C 1.54633 * 101.76146 * 215.58378 * 15 13 12 17 17 C 1.51279 * 104.19747 * 24.80100 * 16 15 13 18 18 O 1.21275 * 124.94276 * 163.77801 * 17 16 15 19 19 N 1.34564 * 110.14007 * 343.67010 * 17 16 15 20 20 C 1.46495 * 119.99780 * 223.07906 * 9 7 2 21 21 C 1.54263 * 110.03147 * 59.28807 * 20 9 7 22 22 C 1.54897 * 104.19506 * 217.10101 * 21 20 9 23 23 C 1.54893 * 102.74539 * 37.94212 * 22 21 20 24 24 C 1.53866 * 110.03409 * 302.11513 * 20 9 7 25 25 H 0.97002 * 119.99748 * 354.75250 * 1 2 3 26 26 H 1.09002 * 109.47008 * 299.99788 * 12 10 9 27 27 H 1.09002 * 109.47172 * 59.99707 * 12 10 9 28 28 H 1.09004 * 110.96598 * 333.70219 * 15 13 12 29 29 H 1.09000 * 110.96827 * 97.42852 * 15 13 12 30 30 H 1.08999 * 110.48133 * 143.47521 * 16 15 13 31 31 H 1.08997 * 110.48613 * 266.11621 * 16 15 13 32 32 H 0.96997 * 124.43930 * 179.64385 * 19 17 16 33 33 H 1.09005 * 110.01735 * 180.72442 * 20 9 7 34 34 H 1.09002 * 110.48852 * 335.77749 * 21 20 9 35 35 H 1.08997 * 110.49049 * 98.42737 * 21 20 9 36 36 H 1.09001 * 110.75668 * 279.62945 * 22 21 20 37 37 H 1.09000 * 110.91714 * 156.32875 * 22 21 20 38 38 H 1.09001 * 110.48326 * 203.38579 * 23 22 21 39 39 H 1.08991 * 110.59914 * 80.79010 * 23 22 21 40 40 H 1.09004 * 110.03666 * 238.57011 * 24 20 9 41 41 H 1.08993 * 110.03572 * 359.95759 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0450 -1.2285 0.3043 9 7 1.3792 -2.3586 -0.3847 10 6 0.5757 -2.3594 -1.4667 11 8 0.4093 -1.3381 -2.0995 12 6 -0.1169 -3.6292 -1.8899 13 6 -0.9621 -3.3582 -3.1361 14 1 -1.6442 -2.5275 -2.9553 15 6 -1.7544 -4.6244 -3.5305 16 6 -1.7388 -4.5380 -5.0743 17 6 -0.5116 -3.7105 -5.3872 18 8 0.0191 -3.6391 -6.4753 19 7 -0.0954 -3.0633 -4.2833 20 6 1.5798 -3.5920 0.3798 21 6 1.1301 -3.3869 1.8411 22 6 2.1571 -4.1961 2.6717 23 6 3.4842 -3.9439 1.9138 24 6 3.0764 -3.9461 0.4260 25 1 -0.4850 0.8366 0.0768 26 1 0.6284 -4.3921 -2.1148 27 1 -0.7615 -3.9778 -1.0829 28 1 -1.2472 -5.5253 -3.1850 29 1 -2.7739 -4.5818 -3.1471 30 1 -1.6497 -5.5326 -5.5111 31 1 -2.6376 -4.0399 -5.4376 32 1 0.6776 -2.4783 -4.2490 33 1 1.0169 -4.4079 -0.0738 34 1 1.1708 -2.3309 2.1082 35 1 0.1246 -3.7805 1.9897 36 1 1.9062 -5.2569 2.6689 37 1 2.2170 -3.8176 3.6921 38 1 4.1965 -4.7439 2.1153 39 1 3.9071 -2.9786 2.1920 40 1 3.2399 -4.9341 -0.0044 41 1 3.6535 -3.2007 -0.1211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828319301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:00 Heat of formation + Delta-G solvation = -74.689435 kcal Electronic energy + Delta-G solvation = -23088.651111 eV Core-core repulsion = 19775.056603 eV Total energy + Delta-G solvation = -3313.594508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08322 -38.78877 -36.95932 -35.96252 -33.32663 -31.76386 -30.97032 -30.20356 -28.10236 -26.89406 -25.73306 -23.80303 -21.19898 -20.21463 -20.12667 -19.85607 -19.05022 -16.88871 -16.42247 -16.13009 -15.93324 -15.02233 -14.73377 -14.47841 -14.13239 -13.87911 -13.59054 -13.28085 -13.02186 -12.79391 -12.74807 -12.42340 -11.94869 -11.63697 -11.35785 -11.18805 -10.93079 -10.92174 -10.80347 -10.67750 -10.64490 -10.51447 -10.45828 -10.22588 -10.06983 -9.83346 -9.56061 -8.75213 -8.65865 -8.06834 -7.08925 -6.12693 -3.84368 2.90769 3.27649 3.38819 3.40436 3.81067 4.14932 4.33205 4.54821 4.65185 4.78820 5.03541 5.13827 5.20389 5.24617 5.36560 5.46677 5.52890 5.67061 5.71873 5.83574 5.87080 5.93925 6.01852 6.04686 6.11635 6.14669 6.20505 6.27544 6.39801 6.43251 6.45316 6.57852 6.77444 6.91719 7.16366 7.22008 7.50687 7.63760 8.27405 8.62656 9.06681 9.15671 9.67938 10.28435 10.96576 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.006467 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.821077 B = 4328.425319 C = 5516.827146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.342 4.342 8 H 0.076 0.924 9 N -0.446 5.446 10 C 0.472 3.528 11 O -0.537 6.537 12 C -0.146 4.146 13 C 0.150 3.850 14 H 0.089 0.911 15 C -0.131 4.131 16 C -0.155 4.155 17 C 0.512 3.488 18 O -0.554 6.554 19 N -0.706 5.706 20 C 0.129 3.871 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.262 0.738 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.418 0.582 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -11.180 1.953 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.168 5.168 10 C 0.259 3.741 11 O -0.415 6.415 12 C -0.187 4.187 13 C 0.044 3.956 14 H 0.107 0.893 15 C -0.169 4.169 16 C -0.195 4.195 17 C 0.298 3.702 18 O -0.433 6.433 19 N -0.361 5.361 20 C 0.024 3.976 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.258 0.742 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.187 -10.547 0.993 10.817 hybrid contribution 0.620 1.045 0.367 1.269 sum -1.567 -9.502 1.360 9.726 Atomic orbital electron populations 1.69815 1.06450 1.27211 1.43024 1.25164 0.94736 0.99143 0.94535 0.86295 0.79896 0.82814 0.77533 1.21036 1.19747 1.21134 1.18788 0.94843 0.84000 1.49289 0.90587 1.43390 1.43845 1.07374 1.22149 1.19792 0.83705 0.88716 0.81924 1.90533 1.62914 1.33752 1.54306 1.22031 0.99801 0.99466 0.97452 1.21414 0.91742 0.96986 0.85416 0.89260 1.22736 1.01579 0.98205 0.94354 1.22320 0.98155 1.01688 0.97367 1.20909 0.85362 0.80155 0.83790 1.90706 1.61909 1.66103 1.24614 1.46417 1.31593 1.47910 1.10192 1.21706 0.94550 0.88775 0.92605 1.22640 0.96822 1.02263 0.94566 1.22442 0.95925 0.99193 0.98516 1.22258 0.96824 1.00922 0.95500 1.22456 0.97539 1.00478 0.96509 0.92792 0.90368 0.89361 0.90037 0.89292 0.88530 0.88141 0.74166 0.91549 0.89102 0.93026 0.92529 0.92352 0.92929 0.91610 0.92978 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.32 11.68 55.50 0.65 -22.67 16 2 C 0.07 2.00 4.36 -17.47 -0.08 1.92 16 3 Si 0.91 21.47 29.60 -169.99 -5.03 16.44 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.34 -8.75 7.44 -14.93 -0.11 -8.86 16 8 H 0.08 1.92 7.10 -52.49 -0.37 1.55 16 9 N -0.45 -10.12 2.46 -106.55 -0.26 -10.38 16 10 C 0.47 10.72 6.78 -10.98 -0.07 10.64 16 11 O -0.54 -14.30 12.62 5.55 0.07 -14.23 16 12 C -0.15 -2.43 3.62 -27.88 -0.10 -2.53 16 13 C 0.15 2.32 3.00 -67.01 -0.20 2.12 16 14 H 0.09 1.56 7.95 -51.93 -0.41 1.15 16 15 C -0.13 -1.42 6.69 -25.10 -0.17 -1.59 16 16 C -0.16 -1.83 6.86 -26.74 -0.18 -2.01 16 17 C 0.51 8.62 8.43 -10.80 -0.09 8.53 16 18 O -0.55 -11.44 18.03 5.56 0.10 -11.34 16 19 N -0.71 -12.23 5.62 -52.73 -0.30 -12.53 16 20 C 0.13 2.33 3.21 -66.82 -0.21 2.11 16 21 C -0.12 -2.17 6.41 -25.07 -0.16 -2.33 16 22 C -0.12 -1.73 6.91 -24.73 -0.17 -1.90 16 23 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 24 C -0.13 -2.14 6.19 -25.61 -0.16 -2.30 16 25 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 26 H 0.08 1.18 7.78 -51.93 -0.40 0.77 16 27 H 0.09 1.33 7.81 -51.93 -0.41 0.92 16 28 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.42 8.14 8.00 -40.82 -0.33 7.81 16 33 H 0.07 1.06 5.82 -51.93 -0.30 0.76 16 34 H 0.09 1.92 7.09 -51.93 -0.37 1.55 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.40 6.87 -51.93 -0.36 1.04 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -32.03 325.99 -8.04 -40.07 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.30 Total: 7.80 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.88 Total: 1.93 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.09 Total: -45.58 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: 0.17 Total: -25.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.03 -8.04 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.621 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds