Wall clock time and date at job start Tue Mar 31 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47290 * 89.99939 * 3 2 1 5 5 H 1.48502 * 109.47085 * 209.99666 * 3 2 1 6 6 H 1.48501 * 109.47191 * 329.99593 * 3 2 1 7 7 C 1.38944 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00368 * 198.95550 * 7 2 1 9 9 N 1.37102 * 119.99832 * 18.95826 * 7 2 1 10 10 C 1.34774 * 119.99731 * 43.07983 * 9 7 2 11 11 O 1.21294 * 120.00545 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99838 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47382 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.21186 * 305.70255 * 13 12 10 15 15 C 1.54479 * 110.24727 * 183.77119 * 13 12 10 16 16 C 1.54633 * 101.76146 * 215.58378 * 15 13 12 17 17 C 1.51279 * 104.19747 * 24.80100 * 16 15 13 18 18 O 1.21275 * 124.94276 * 163.77801 * 17 16 15 19 19 N 1.34564 * 110.14007 * 343.67010 * 17 16 15 20 20 C 1.46495 * 119.99780 * 223.07906 * 9 7 2 21 21 C 1.54263 * 110.03147 * 59.28807 * 20 9 7 22 22 C 1.54897 * 104.19506 * 217.10101 * 21 20 9 23 23 C 1.54893 * 102.74539 * 37.94212 * 22 21 20 24 24 C 1.53866 * 110.03409 * 302.11513 * 20 9 7 25 25 H 0.97002 * 119.99748 * 354.75250 * 1 2 3 26 26 H 1.09002 * 109.47008 * 299.99788 * 12 10 9 27 27 H 1.09002 * 109.47172 * 59.99707 * 12 10 9 28 28 H 1.09004 * 110.96598 * 333.70219 * 15 13 12 29 29 H 1.09000 * 110.96827 * 97.42852 * 15 13 12 30 30 H 1.08999 * 110.48133 * 143.47521 * 16 15 13 31 31 H 1.08997 * 110.48613 * 266.11621 * 16 15 13 32 32 H 0.96997 * 124.43930 * 179.64385 * 19 17 16 33 33 H 1.09005 * 110.01735 * 180.72442 * 20 9 7 34 34 H 1.09002 * 110.48852 * 335.77749 * 21 20 9 35 35 H 1.08997 * 110.49049 * 98.42737 * 21 20 9 36 36 H 1.09001 * 110.75668 * 279.62945 * 22 21 20 37 37 H 1.09000 * 110.91714 * 156.32875 * 22 21 20 38 38 H 1.09001 * 110.48326 * 203.38579 * 23 22 21 39 39 H 1.08991 * 110.59914 * 80.79010 * 23 22 21 40 40 H 1.09004 * 110.03666 * 238.57011 * 24 20 9 41 41 H 1.08993 * 110.03572 * 359.95759 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0450 -1.2285 0.3043 9 7 1.3792 -2.3586 -0.3847 10 6 0.5757 -2.3594 -1.4667 11 8 0.4093 -1.3381 -2.0995 12 6 -0.1169 -3.6292 -1.8899 13 6 -0.9621 -3.3582 -3.1361 14 1 -1.6442 -2.5275 -2.9553 15 6 -1.7544 -4.6244 -3.5305 16 6 -1.7388 -4.5380 -5.0743 17 6 -0.5116 -3.7105 -5.3872 18 8 0.0191 -3.6391 -6.4753 19 7 -0.0954 -3.0633 -4.2833 20 6 1.5798 -3.5920 0.3798 21 6 1.1301 -3.3869 1.8411 22 6 2.1571 -4.1961 2.6717 23 6 3.4842 -3.9439 1.9138 24 6 3.0764 -3.9461 0.4260 25 1 -0.4850 0.8366 0.0768 26 1 0.6284 -4.3921 -2.1148 27 1 -0.7615 -3.9778 -1.0829 28 1 -1.2472 -5.5253 -3.1850 29 1 -2.7739 -4.5818 -3.1471 30 1 -1.6497 -5.5326 -5.5111 31 1 -2.6376 -4.0399 -5.4376 32 1 0.6776 -2.4783 -4.2490 33 1 1.0169 -4.4079 -0.0738 34 1 1.1708 -2.3309 2.1082 35 1 0.1246 -3.7805 1.9897 36 1 1.9062 -5.2569 2.6689 37 1 2.2170 -3.8176 3.6921 38 1 4.1965 -4.7439 2.1153 39 1 3.9071 -2.9786 2.1920 40 1 3.2399 -4.9341 -0.0044 41 1 3.6535 -3.2007 -0.1211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828319301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:59 Heat of formation + Delta-G solvation = -96.544629 kcal Electronic energy + Delta-G solvation = -23089.598824 eV Core-core repulsion = 19775.056603 eV Total energy + Delta-G solvation = -3314.542220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39399 -40.34296 -38.41743 -37.38949 -35.10258 -33.56481 -32.06595 -31.65434 -29.39469 -28.37814 -27.24192 -25.34382 -22.40610 -21.52586 -21.34198 -21.25923 -20.69899 -18.24002 -18.05272 -17.58484 -17.37434 -16.70404 -16.16534 -15.98139 -15.63333 -15.32809 -15.08717 -14.58391 -14.45569 -14.14681 -14.04551 -13.52195 -13.34077 -13.22814 -12.92577 -12.84103 -12.49912 -12.40116 -12.20627 -12.08149 -12.03324 -11.86360 -11.80862 -11.73383 -11.32543 -11.27217 -10.89260 -10.69181 -10.02426 -9.88230 -8.94974 -8.15363 -5.86158 1.33817 1.41683 1.46886 1.61840 2.30373 2.51357 2.57478 3.16761 3.29411 3.53452 3.64984 3.90215 3.96494 3.99809 4.10917 4.30339 4.37292 4.50222 4.57753 4.65947 4.74195 4.78276 4.86545 4.90280 4.91290 4.95308 4.98234 5.14448 5.17105 5.22262 5.31708 5.33262 5.48017 5.59236 5.62221 5.73985 5.85699 6.20623 6.29933 7.13513 7.25831 7.31158 7.84389 8.48200 8.93635 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.006467 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.821077 B = 4328.425319 C = 5516.827146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.028 3.972 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.298 1.298 7 C -0.341 4.341 8 H 0.070 0.930 9 N -0.461 5.461 10 C 0.456 3.544 11 O -0.586 6.586 12 C -0.132 4.132 13 C 0.146 3.854 14 H 0.062 0.938 15 C -0.112 4.112 16 C -0.142 4.142 17 C 0.501 3.499 18 O -0.602 6.602 19 N -0.716 5.716 20 C 0.121 3.879 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.254 0.746 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.400 0.600 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 -14.724 2.830 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.225 1.225 7 C -0.469 4.469 8 H 0.088 0.912 9 N -0.182 5.182 10 C 0.245 3.755 11 O -0.468 6.468 12 C -0.173 4.173 13 C 0.041 3.959 14 H 0.080 0.920 15 C -0.149 4.149 16 C -0.182 4.182 17 C 0.289 3.711 18 O -0.485 6.485 19 N -0.368 5.368 20 C 0.017 3.983 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.167 4.167 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.237 0.763 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.766 -14.128 1.925 14.525 hybrid contribution 0.874 2.137 0.087 2.311 sum -1.892 -11.991 2.012 12.305 Atomic orbital electron populations 1.69906 1.07425 1.26929 1.45648 1.25780 0.95333 1.01649 0.95045 0.85565 0.78471 0.79947 0.78002 1.19368 1.19952 1.22472 1.18890 0.94718 0.85447 1.47811 0.91225 1.43659 1.43581 1.08069 1.22923 1.20895 0.83106 0.90287 0.81220 1.90503 1.64336 1.36238 1.55744 1.21962 1.00305 0.96401 0.98592 1.21523 0.91199 0.98697 0.84469 0.92017 1.22777 1.02620 0.96205 0.93307 1.22371 0.95614 1.01945 0.98258 1.21873 0.86407 0.80041 0.82747 1.90670 1.63708 1.67768 1.26325 1.46673 1.31196 1.47477 1.11417 1.22034 0.96332 0.87425 0.92533 1.22564 0.98690 1.00081 0.94950 1.22407 0.94016 1.00353 0.98049 1.22255 0.97806 1.01005 0.94237 1.22432 0.95673 1.00995 0.97609 0.93644 0.88046 0.86865 0.87503 0.86291 0.85930 0.86465 0.76298 0.88567 0.93780 0.91973 0.89376 0.91657 0.89884 0.93737 0.89930 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.46 11.68 21.66 0.25 -50.20 16 2 C 0.03 1.56 4.36 84.92 0.37 1.93 16 3 Si 0.95 45.79 29.60 68.60 2.03 47.82 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 7 C -0.34 -17.97 7.44 84.04 0.63 -17.34 16 8 H 0.07 3.66 7.10 -2.91 -0.02 3.64 16 9 N -0.46 -21.08 2.46 -609.40 -1.50 -22.58 16 10 C 0.46 20.88 6.78 87.66 0.59 21.48 16 11 O -0.59 -32.49 12.62 -3.07 -0.04 -32.53 16 12 C -0.13 -4.09 3.62 29.85 0.11 -3.98 16 13 C 0.15 4.28 3.00 45.44 0.14 4.42 16 14 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 15 C -0.11 -1.92 6.69 31.65 0.21 -1.71 16 16 C -0.14 -2.84 6.86 30.59 0.21 -2.63 16 17 C 0.50 16.46 8.43 87.87 0.74 17.20 16 18 O -0.60 -25.09 18.03 -3.01 -0.05 -25.15 16 19 N -0.72 -24.81 5.62 -439.25 -2.47 -27.28 16 20 C 0.12 4.14 3.21 45.71 0.15 4.29 16 21 C -0.12 -4.16 6.41 31.67 0.20 -3.96 16 22 C -0.11 -2.76 6.91 31.89 0.22 -2.54 16 23 C -0.12 -3.07 6.83 31.67 0.22 -2.86 16 24 C -0.13 -3.93 6.19 31.32 0.19 -3.73 16 25 H 0.25 14.60 8.32 -92.71 -0.77 13.83 16 26 H 0.10 2.69 7.78 -2.39 -0.02 2.67 16 27 H 0.11 2.98 7.81 -2.39 -0.02 2.96 16 28 H 0.11 1.38 7.91 -2.39 -0.02 1.36 16 29 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.40 16.28 8.00 -92.71 -0.74 15.54 16 33 H 0.10 2.70 5.82 -2.38 -0.01 2.68 16 34 H 0.04 1.89 7.09 -2.39 -0.02 1.87 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.04 1.58 6.87 -2.39 -0.02 1.56 16 Total: -1.00 -75.94 325.99 2.49 -73.45 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.29 Total: 25.90 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 3.98 Total: 10.57 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -3.71 Total: -100.06 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -0.09 Total: -57.68 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.94 2.49 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.095 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds