Wall clock time and date at job start Tue Mar 31 2020 02:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00248 * 2 1 4 4 H 1.48502 * 109.47483 * 240.00609 * 3 2 1 5 5 H 1.48499 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47380 * 120.00309 * 3 2 1 7 7 C 1.38961 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 201.63149 * 7 2 1 9 9 N 1.37089 * 119.99949 * 21.90188 * 7 2 1 10 10 C 1.34772 * 120.00076 * 40.45371 * 9 7 2 11 11 O 1.21287 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00108 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.21852 * 53.06754 * 13 12 10 15 15 C 1.54481 * 110.24483 * 174.99551 * 13 12 10 16 16 C 1.54637 * 101.76109 * 93.58619 * 15 13 12 17 17 C 1.51279 * 104.19546 * 24.79478 * 16 15 13 18 18 O 1.21280 * 124.93632 * 163.78305 * 17 16 15 19 19 N 1.34418 * 110.11936 * 343.75025 * 17 16 15 20 20 C 1.46500 * 119.99984 * 220.45085 * 9 7 2 21 21 C 1.54266 * 110.03422 * 58.38138 * 20 9 7 22 22 C 1.54966 * 104.15984 * 217.13990 * 21 20 9 23 23 C 1.54889 * 102.77948 * 37.88763 * 22 21 20 24 24 C 1.53874 * 110.03048 * 301.16352 * 20 9 7 25 25 H 0.97006 * 119.99484 * 4.04437 * 1 2 3 26 26 H 1.09002 * 109.46527 * 299.99719 * 12 10 9 27 27 H 1.08997 * 109.47108 * 59.99310 * 12 10 9 28 28 H 1.08998 * 110.97164 * 211.70200 * 15 13 12 29 29 H 1.08996 * 110.97202 * 335.46665 * 15 13 12 30 30 H 1.08995 * 110.48221 * 143.47910 * 16 15 13 31 31 H 1.09001 * 110.48345 * 266.11709 * 16 15 13 32 32 H 0.96998 * 124.35012 * 179.59222 * 19 17 16 33 33 H 1.09001 * 110.01718 * 179.77560 * 20 9 7 34 34 H 1.09002 * 110.48598 * 335.78045 * 21 20 9 35 35 H 1.08991 * 110.48459 * 98.42723 * 21 20 9 36 36 H 1.08994 * 110.71959 * 279.57136 * 22 21 20 37 37 H 1.08998 * 110.92053 * 156.29521 * 22 21 20 38 38 H 1.09004 * 110.48440 * 203.40898 * 23 22 21 39 39 H 1.08993 * 110.48953 * 80.75957 * 23 22 21 40 40 H 1.08998 * 110.03658 * 238.56914 * 24 20 9 41 41 H 1.08997 * 110.03795 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0318 -1.2366 0.3443 9 7 1.3975 -2.3476 -0.4439 10 6 0.6003 -2.3083 -1.5299 11 8 0.4233 -1.2605 -2.1146 12 6 -0.0713 -3.5662 -2.0176 13 6 -0.9131 -3.2480 -3.2548 14 1 -0.3058 -2.7384 -4.0029 15 6 -1.5093 -4.5457 -3.8440 16 6 -2.8947 -4.5955 -3.1588 17 6 -3.1921 -3.1520 -2.8180 18 8 -4.2866 -2.7186 -2.5263 19 7 -2.0669 -2.4198 -2.8848 20 6 1.6109 -3.6131 0.2627 21 6 1.1712 -3.4769 1.7351 22 6 2.2105 -4.3163 2.5203 23 6 3.5299 -4.0228 1.7639 24 6 3.1098 -3.9604 0.2808 25 1 -0.4850 0.8380 -0.0593 26 1 0.6866 -4.3066 -2.2739 27 1 -0.7152 -3.9622 -1.2324 28 1 -1.6120 -4.4714 -4.9266 29 1 -0.9069 -5.4115 -3.5693 30 1 -3.6454 -4.9882 -3.8446 31 1 -2.8507 -5.2002 -2.2529 32 1 -2.0230 -1.4666 -2.7108 33 1 1.0486 -4.4108 -0.2227 34 1 1.2079 -2.4338 2.0492 35 1 0.1691 -3.8828 1.8730 36 1 1.9653 -5.3772 2.4718 37 1 2.2769 -3.9837 3.5561 38 1 4.2481 -4.8270 1.9235 39 1 3.9479 -3.0679 2.0824 40 1 3.2749 -4.9271 -0.1950 41 1 3.6786 -3.1873 -0.2357 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828319302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:02 Heat of formation + Delta-G solvation = -95.886995 kcal Electronic energy + Delta-G solvation = -23290.465910 eV Core-core repulsion = 19975.952207 eV Total energy + Delta-G solvation = -3314.513703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43128 -40.32035 -38.40047 -37.39717 -35.07956 -33.55912 -32.06997 -31.35776 -29.39924 -28.38382 -27.33130 -25.56083 -22.31759 -21.50573 -21.35456 -21.20392 -20.63377 -18.47969 -18.05063 -17.57930 -16.82971 -16.61646 -16.34767 -16.02299 -15.80977 -15.18569 -15.09713 -14.56428 -14.50324 -14.07331 -13.92985 -13.54489 -13.36494 -13.31149 -12.98213 -12.82995 -12.50268 -12.38110 -12.22129 -12.09075 -11.96272 -11.81105 -11.76875 -11.71869 -11.35027 -11.27333 -10.87972 -10.68280 -10.02399 -9.85723 -8.98468 -8.13234 -5.85182 1.35776 1.42706 1.45885 1.64715 2.34300 2.55448 2.59134 3.18131 3.31243 3.53651 3.70556 3.91035 3.96801 3.99964 4.14339 4.25103 4.39759 4.57016 4.58531 4.66698 4.73132 4.77930 4.87151 4.88242 4.90750 4.97377 5.04608 5.15207 5.16328 5.20686 5.26114 5.32614 5.47132 5.60753 5.62328 5.70154 5.90196 6.25117 6.29394 7.13443 7.28619 7.32697 7.85501 8.49136 8.92367 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.007129 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.096229 B = 3926.756878 C = 5156.827510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.338 4.338 8 H 0.074 0.926 9 N -0.462 5.462 10 C 0.456 3.544 11 O -0.586 6.586 12 C -0.136 4.136 13 C 0.143 3.857 14 H 0.082 0.918 15 C -0.109 4.109 16 C -0.143 4.143 17 C 0.497 3.503 18 O -0.607 6.607 19 N -0.715 5.715 20 C 0.121 3.879 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.126 4.126 25 H 0.251 0.749 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.399 0.601 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -16.460 -2.935 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.092 0.908 9 N -0.184 5.184 10 C 0.246 3.754 11 O -0.468 6.468 12 C -0.177 4.177 13 C 0.038 3.962 14 H 0.100 0.900 15 C -0.146 4.146 16 C -0.183 4.183 17 C 0.285 3.715 18 O -0.490 6.490 19 N -0.365 5.365 20 C 0.017 3.983 21 C -0.166 4.166 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.060 0.940 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.236 0.764 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.119 -15.733 -3.045 16.325 hybrid contribution 0.154 2.406 0.410 2.446 sum 3.272 -13.327 -2.635 13.973 Atomic orbital electron populations 1.70021 1.07563 1.27041 1.45015 1.25726 0.95100 1.01715 0.95374 0.85688 0.78330 0.79907 0.78414 1.20873 1.22333 1.18871 1.18919 0.95753 0.86539 1.45397 0.90803 1.43686 1.44353 1.07026 1.23292 1.20866 0.82746 0.90561 0.81262 1.90465 1.63694 1.34143 1.58466 1.22108 1.00163 0.96826 0.98641 1.21578 0.86534 0.92613 0.95474 0.90011 1.22753 0.94283 0.96242 1.01328 1.22381 1.00284 0.91199 1.04413 1.21977 0.82952 0.91527 0.75038 1.90665 1.26759 1.79002 1.52598 1.46636 1.09405 1.11997 1.68462 1.22031 0.96693 0.86815 0.92762 1.22596 0.98414 0.99864 0.95775 1.22417 0.94163 1.00053 0.98214 1.22263 0.97546 1.01007 0.94482 1.22430 0.95060 1.01416 0.97513 0.94020 0.85553 0.90036 0.88021 0.85340 0.86253 0.86267 0.76442 0.88585 0.94023 0.92870 0.89346 0.91885 0.89542 0.93811 0.89250 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.84 11.66 21.67 0.25 -51.59 16 2 C 0.03 1.52 4.26 84.93 0.36 1.88 16 3 Si 0.95 46.15 29.61 68.60 2.03 48.18 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.34 -17.90 7.44 84.04 0.63 -17.27 16 8 H 0.07 3.84 7.18 -2.91 -0.02 3.82 16 9 N -0.46 -21.22 2.47 -609.37 -1.50 -22.72 16 10 C 0.46 20.90 6.90 87.66 0.60 21.51 16 11 O -0.59 -32.14 12.63 -3.05 -0.04 -32.18 16 12 C -0.14 -4.20 3.62 29.85 0.11 -4.09 16 13 C 0.14 4.08 3.00 45.44 0.14 4.22 16 14 H 0.08 2.51 7.91 -2.39 -0.02 2.49 16 15 C -0.11 -1.79 6.70 31.66 0.21 -1.58 16 16 C -0.14 -2.97 6.86 30.59 0.21 -2.76 16 17 C 0.50 17.52 8.43 87.90 0.74 18.26 16 18 O -0.61 -27.37 18.03 -3.03 -0.05 -27.43 16 19 N -0.71 -26.33 5.52 -439.45 -2.43 -28.76 16 20 C 0.12 4.17 3.20 45.72 0.15 4.32 16 21 C -0.13 -4.50 6.42 31.70 0.20 -4.30 16 22 C -0.11 -2.86 6.91 31.91 0.22 -2.64 16 23 C -0.12 -3.01 6.83 31.67 0.22 -2.80 16 24 C -0.13 -3.67 6.19 31.32 0.19 -3.47 16 25 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 26 H 0.13 2.81 7.75 -2.39 -0.02 2.79 16 27 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.13 1.22 7.86 -2.39 -0.02 1.20 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.40 17.82 8.37 -92.71 -0.78 17.04 16 33 H 0.10 2.71 5.82 -2.39 -0.01 2.70 16 34 H 0.04 1.87 7.05 -2.39 -0.02 1.85 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.65 6.95 -2.39 -0.02 1.64 16 Total: -1.00 -78.34 326.27 2.49 -75.84 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.26 Total: 27.37 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 3.98 Total: 11.29 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.68 Total: -103.06 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -0.09 Total: -59.61 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.34 2.49 -75.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.043 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds