Wall clock time and date at job start Tue Mar 31 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47445 * 270.00246 * 3 2 1 5 5 H 1.48497 * 109.47335 * 149.99778 * 3 2 1 6 6 H 1.48501 * 109.47216 * 30.00319 * 3 2 1 7 7 C 1.37876 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46823 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99594 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00483 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99531 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.70578 * 322.95759 * 13 11 10 15 15 C 1.53067 * 109.70537 * 202.33413 * 13 11 10 16 16 C 1.50981 * 110.43578 * 287.92673 * 15 13 11 17 17 O 1.21275 * 118.45605 * 163.15871 * 16 15 13 18 18 N 1.33534 * 123.26461 * 344.35250 * 16 15 13 19 19 C 1.45451 * 123.69839 * 1.36377 * 18 16 15 20 20 H 1.08998 * 108.20480 * 98.22896 * 19 18 16 21 21 C 1.52459 * 110.54340 * 216.55922 * 19 18 16 22 22 C 1.52976 * 109.97544 * 65.15969 * 21 19 18 23 23 C 1.53068 * 109.14744 * 59.60773 * 22 21 19 24 24 C 1.52913 * 109.22801 * 299.04225 * 23 22 21 25 25 C 1.52688 * 110.82838 * 339.74568 * 19 18 16 26 26 H 1.08998 * 109.93315 * 172.55570 * 25 19 18 27 27 H 0.97005 * 120.00109 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47202 * 299.99632 * 9 7 2 29 29 H 1.08994 * 109.47440 * 60.00231 * 9 7 2 30 30 H 0.96996 * 120.00432 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.35301 * 49.15683 * 15 13 11 32 32 H 1.09000 * 109.35914 * 168.74617 * 15 13 11 33 33 H 0.97001 * 118.14525 * 181.39254 * 18 16 15 34 34 H 1.09005 * 109.38626 * 185.31311 * 21 19 18 35 35 H 1.08995 * 109.38959 * 305.10450 * 21 19 18 36 36 H 1.09000 * 109.52217 * 179.50781 * 22 21 19 37 37 H 1.08996 * 109.52410 * 299.70445 * 22 21 19 38 38 H 1.09003 * 109.51170 * 58.96265 * 23 22 21 39 39 H 1.08997 * 109.51238 * 179.06475 * 23 22 21 40 40 H 1.09001 * 109.41935 * 300.54353 * 24 23 22 41 41 H 1.09006 * 109.41853 * 180.73792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5466 1.4402 0.7001 6 1 1.4466 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7332 -6.0287 -0.0022 14 1 3.5941 -5.7757 -0.6209 15 6 2.0552 -7.2872 -0.5493 16 6 1.0640 -7.8298 0.4521 17 8 0.2298 -8.6219 0.0685 18 7 1.0450 -7.4634 1.7361 19 6 1.9538 -6.4829 2.3091 20 1 1.4371 -5.5242 2.3526 21 6 2.3427 -6.8794 3.7289 22 6 3.1481 -8.1798 3.7063 23 6 4.4097 -7.9744 2.8641 24 6 4.0070 -7.6143 1.4335 25 6 3.1946 -6.3167 1.4348 26 1 3.8008 -5.4892 1.8035 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6240 -2.5567 -0.8902 30 1 3.1567 -3.4354 -0.0021 31 1 1.5484 -7.0471 -1.4840 32 1 2.8092 -8.0520 -0.7355 33 1 0.3883 -7.8747 2.3196 34 1 2.9460 -6.0878 4.1733 35 1 1.4410 -7.0243 4.3239 36 1 3.4296 -8.4516 4.7237 37 1 2.5440 -8.9749 3.2696 38 1 5.0038 -7.1656 3.2895 39 1 4.9966 -8.8928 2.8576 40 1 3.4038 -8.4192 1.0134 41 1 4.9032 -7.4802 0.8277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:56 Heat of formation + Delta-G solvation = -104.118323 kcal Electronic energy + Delta-G solvation = -23179.550666 eV Core-core repulsion = 19864.680025 eV Total energy + Delta-G solvation = -3314.870640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40107 -38.60040 -37.92914 -34.61660 -34.09363 -33.81123 -32.44334 -29.99476 -29.33940 -27.25935 -25.01313 -23.04099 -22.81375 -22.24221 -20.88829 -19.91024 -18.48862 -17.37329 -16.70783 -16.34391 -16.16341 -15.80509 -15.30473 -14.81283 -14.39278 -14.31602 -13.94727 -13.83265 -13.41096 -13.15811 -13.10063 -12.68996 -12.48807 -12.37594 -12.13425 -11.88887 -11.66661 -11.42910 -11.20003 -11.07170 -10.81659 -10.74786 -10.63942 -10.39614 -10.21959 -9.57508 -9.22329 -8.85110 -8.82253 -8.73900 -8.08282 -6.56335 -4.30723 2.88092 3.10210 3.33942 3.37003 3.44318 3.52587 3.83371 4.31857 4.37647 4.39019 4.43570 4.70521 4.74989 4.88228 5.00532 5.01087 5.15437 5.19152 5.22651 5.29095 5.39164 5.43399 5.57919 5.61677 5.67857 5.77956 5.79257 5.86816 5.94722 5.95262 6.05797 6.14530 6.92752 6.93632 7.15229 7.21899 7.51854 7.58744 8.20798 8.37525 8.42769 8.65351 8.87365 9.43333 10.83674 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004599 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.104969 B = 6086.482556 C = 6582.698082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 1.078 2.922 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.240 3.760 10 N -0.704 5.704 11 C 0.498 3.502 12 O -0.545 6.545 13 C -0.113 4.113 14 H 0.103 0.897 15 C -0.115 4.115 16 C 0.540 3.460 17 O -0.567 6.567 18 N -0.702 5.702 19 C 0.143 3.857 20 H 0.073 0.927 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.083 4.083 26 H 0.099 0.901 27 H 0.273 0.727 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.393 0.607 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.395 0.605 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.215 -14.736 6.335 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.905 3.095 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.662 4.662 8 H 0.076 0.924 9 C 0.119 3.881 10 N -0.352 5.352 11 C 0.282 3.718 12 O -0.424 6.424 13 C -0.135 4.135 14 H 0.121 0.879 15 C -0.155 4.155 16 C 0.328 3.672 17 O -0.446 6.446 18 N -0.353 5.353 19 C 0.037 3.963 20 H 0.091 0.909 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.102 4.102 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.225 0.775 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.868 -13.501 5.982 18.335 hybrid contribution 0.428 -1.501 0.211 1.574 sum 11.296 -15.002 6.193 19.774 Atomic orbital electron populations 1.70732 1.06910 1.31099 1.44836 1.25875 0.96400 1.02763 0.93261 0.83414 0.74499 0.74636 0.76912 1.21248 1.21355 1.20781 1.22071 0.94540 0.91462 1.58148 0.92439 1.19165 0.88986 0.83534 0.96419 1.46298 1.11006 1.05722 1.72178 1.20334 0.89418 0.84308 0.77690 1.90716 1.16593 1.84691 1.50367 1.21625 0.99158 0.94487 0.98195 0.87869 1.21615 0.98250 0.96606 0.99026 1.19979 0.84592 0.79999 0.82639 1.90708 1.39212 1.36928 1.77770 1.45256 1.36458 1.43520 1.10089 1.20665 0.90252 0.92632 0.92721 0.90873 1.21767 1.00807 0.98619 0.95408 1.21534 0.96685 0.97571 0.99933 1.21519 0.97382 1.01530 0.95109 1.21691 0.99680 0.96662 0.97476 1.21434 0.96015 0.99552 0.93214 0.88325 0.91668 0.96623 0.96583 0.77451 0.87864 0.88050 0.76926 0.90134 0.91225 0.91822 0.91786 0.91617 0.91825 0.91445 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.65 55.43 0.76 -26.21 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 23.93 29.90 -169.99 -5.08 18.85 16 4 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.62 -16.64 9.28 -34.44 -0.32 -16.96 16 8 H 0.06 1.45 7.60 -52.48 -0.40 1.05 16 9 C 0.24 6.13 4.74 -5.19 -0.02 6.11 16 10 N -0.70 -13.91 5.55 -61.47 -0.34 -14.25 16 11 C 0.50 9.19 5.53 -10.98 -0.06 9.13 16 12 O -0.55 -12.47 14.65 5.56 0.08 -12.39 16 13 C -0.11 -1.44 2.70 -91.40 -0.25 -1.69 16 14 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.11 -1.56 4.55 -27.71 -0.13 -1.68 16 16 C 0.54 8.78 5.62 -11.40 -0.06 8.72 16 17 O -0.57 -11.37 17.80 5.56 0.10 -11.27 16 18 N -0.70 -9.73 4.45 -55.10 -0.25 -9.98 16 19 C 0.14 1.73 2.35 -68.93 -0.16 1.57 16 20 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 21 C -0.13 -1.17 5.51 -27.02 -0.15 -1.32 16 22 C -0.12 -0.95 5.84 -26.71 -0.16 -1.11 16 23 C -0.12 -0.87 5.92 -26.74 -0.16 -1.03 16 24 C -0.12 -0.99 4.55 -26.73 -0.12 -1.11 16 25 C -0.08 -0.88 2.35 -90.39 -0.21 -1.09 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 28 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 30 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.10 1.55 8.09 -51.93 -0.42 1.13 16 32 H 0.10 1.05 6.81 -51.93 -0.35 0.69 16 33 H 0.40 5.17 8.67 -40.82 -0.35 4.81 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.64 5.40 -51.93 -0.28 0.36 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -34.47 319.79 -8.03 -42.50 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.22 Total: 7.84 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.90 Total: 0.08 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.17 Total: -50.43 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.18 Total: -23.66 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.47 -8.03 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.615 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds